© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 141 |
|---|---|
| Total assembly length (Mbp) | 28.45 |
| Assembly GC content (%) | 48.13 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 13 |
| N50 length (bp) | 591365 |
| Total repeats (#) | 6909 |
| Repetitive content (bp, %) | 1291832 (4.54%) |
| Genes | 10008 |
| Gene length (median) | 1388 |
| Transcript length (median) | 1230 |
| Exon length (median) | 226 |
| CDS length (median) | 1230 |
| Protein length (median) | 410 |
| Spliced genes (total, %) | 8061 (80.55%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 351.72 |
| Coding content of assembly (bp, %) | 14628498 (51.41%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4071 |
| Genes with PFAM (total, %) | 7466 (74.6%) |
| Genes with GO (total, %) | 4791 (47.87%) |
| Genes with signalP (total, %) | 717 (7.16%) |
| Genes with TMHMM (total, %) | 1990 (19.88%) |
| Genes annotated as TF (total, %) | 413 (4.13%) |
| Genes annotated as MEROPS protease (total, %) | 302 (3.02%) |
| Genes annotated as CAZyme (total, %) | 381 (3.81%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 100.0% (Single-copy: 99.66%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.0% |