© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 177 |
|---|---|
| Total assembly length (Mbp) | 29.3 |
| Assembly GC content (%) | 48.12 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 11 |
| N50 length (bp) | 761036 |
| Total repeats (#) | 7551 |
| Repetitive content (bp, %) | 1663039 (5.68%) |
| Genes | 10325 |
| Gene length (median) | 1376 |
| Transcript length (median) | 1212 |
| Exon length (median) | 227 |
| CDS length (median) | 1212 |
| Protein length (median) | 404 |
| Spliced genes (total, %) | 8268 (80.08%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 352.37 |
| Coding content of assembly (bp, %) | 14938836 (50.98%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4069 |
| Genes with PFAM (total, %) | 7582 (73.43%) |
| Genes with GO (total, %) | 4853 (47.0%) |
| Genes with signalP (total, %) | 730 (7.07%) |
| Genes with TMHMM (total, %) | 2057 (19.92%) |
| Genes annotated as TF (total, %) | 427 (4.14%) |
| Genes annotated as MEROPS protease (total, %) | 324 (3.14%) |
| Genes annotated as CAZyme (total, %) | 391 (3.79%) |
| Secondary metabolism gene cluster | 32 |
| CEGMA completeness (%) | 99.56 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |