© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 304 |
|---|---|
| Total assembly length (Mbp) | 29.56 |
| Assembly GC content (%) | 48.04 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 23 |
| N50 length (bp) | 448362 |
| Total repeats (#) | 7985 |
| Repetitive content (bp, %) | 1734165 (5.87%) |
| Genes | 10313 |
| Gene length (median) | 1379 |
| Transcript length (median) | 1215 |
| Exon length (median) | 227 |
| CDS length (median) | 1215 |
| Protein length (median) | 405 |
| Spliced genes (total, %) | 8282 (80.31%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 348.87 |
| Coding content of assembly (bp, %) | 14970399 (50.64%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4069 |
| Genes with PFAM (total, %) | 7614 (73.83%) |
| Genes with GO (total, %) | 4893 (47.44%) |
| Genes with signalP (total, %) | 740 (7.18%) |
| Genes with TMHMM (total, %) | 2058 (19.96%) |
| Genes annotated as TF (total, %) | 424 (4.11%) |
| Genes annotated as MEROPS protease (total, %) | 324 (3.14%) |
| Genes annotated as CAZyme (total, %) | 390 (3.78%) |
| Secondary metabolism gene cluster | 35 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |