© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 165 |
|---|---|
| Total assembly length (Mbp) | 29.27 |
| Assembly GC content (%) | 48.11 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 15 |
| N50 length (bp) | 620266 |
| Total repeats (#) | 7415 |
| Repetitive content (bp, %) | 1505922 (5.14%) |
| Genes | 10252 |
| Gene length (median) | 1379 |
| Transcript length (median) | 1218 |
| Exon length (median) | 228 |
| CDS length (median) | 1218 |
| Protein length (median) | 406 |
| Spliced genes (total, %) | 8207 (80.05%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 350.24 |
| Coding content of assembly (bp, %) | 14889840 (50.87%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4073 |
| Genes with PFAM (total, %) | 7558 (73.72%) |
| Genes with GO (total, %) | 4861 (47.42%) |
| Genes with signalP (total, %) | 724 (7.06%) |
| Genes with TMHMM (total, %) | 2007 (19.58%) |
| Genes annotated as TF (total, %) | 418 (4.08%) |
| Genes annotated as MEROPS protease (total, %) | 304 (2.97%) |
| Genes annotated as CAZyme (total, %) | 385 (3.76%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 100.0% (Single-copy: 99.66%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.0% |