© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 1358 |
|---|---|
| Total assembly length (Mbp) | 29.6 |
| Assembly GC content (%) | 47.88 |
| Assembly gaps (%) | 0.48 |
| L50 number (#) | 45 |
| N50 length (bp) | 139787 |
| Total repeats (#) | 8186 |
| Repetitive content (bp, %) | 1767547 (5.97%) |
| Genes | 10253 |
| Gene length (median) | 1337 |
| Transcript length (median) | 1179 |
| Exon length (median) | 224 |
| CDS length (median) | 1179 |
| Protein length (median) | 393 |
| Spliced genes (total, %) | 8216 (80.13%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 346.44 |
| Coding content of assembly (bp, %) | 14556354 (49.18%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4021 |
| Genes with PFAM (total, %) | 7512 (73.27%) |
| Genes with GO (total, %) | 4796 (46.78%) |
| Genes with signalP (total, %) | 718 (7.0%) |
| Genes with TMHMM (total, %) | 1998 (19.49%) |
| Genes annotated as TF (total, %) | 407 (3.97%) |
| Genes annotated as MEROPS protease (total, %) | 299 (2.92%) |
| Genes annotated as CAZyme (total, %) | 380 (3.71%) |
| Secondary metabolism gene cluster | 32 |
| CEGMA completeness (%) | 98.69 |
| BUSCO2 completeness (fungi_odb9) | Complete: 94.83% (Single-copy: 94.14%, Duplicated: 0.69%), Fragmented: 3.79%, Missing: 1.38% |