Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO012A7_2|g8254.t1
Gene name
Locationscaffold_25:182783..183506
Strand-
Gene length (bp)723
Transcript length (bp)342
Coding sequence length (bp)342
Protein length (aa) 114

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.3E-19 13 79
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-06 9 83

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0003674 molecular_function No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0005488 binding No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID2
Orthogroup4570
Change Orthofinder run
Species Protein ID
Penicillium roqueforti DTO002I6 Pro_DTO002I6_2|g5139.t1
Penicillium roqueforti DTO003C3 Pro_DTO003C3_2|g3099.t1
Penicillium roqueforti DTO003H1 (CBS 147308) Pro_DTO003H1_2|g5158.t1
Penicillium roqueforti DTO006G1 Pro_DTO006G1_2|g8323.t1
Penicillium roqueforti DTO006G7 Pro_DTO006G7_3|g9485.t1
Penicillium roqueforti DTO012A1 Pro_DTO012A1_2|g6881.t1
Penicillium roqueforti DTO012A2 (CBS 147309) Pro_DTO012A2_2|g7971.t1
Penicillium roqueforti DTO012A6 (CBS 147310) Pro_DTO012A6_2|g8117.t1
Penicillium roqueforti DTO012A7 Pro_DTO012A7_2|g8254.t1 (this protein)
Penicillium roqueforti DTO012A8 Pro_DTO012A8_2|g5033.t1
Penicillium roqueforti DTO012A9 Pro_DTO012A9_2|g6237.t1
Penicillium roqueforti DTO013E5 Pro_DTO013E5_2|g6817.t1
Penicillium roqueforti DTO013F2 Pro_DTO013F2_2|g10037.t1
Penicillium roqueforti DTO013F5 (CBS 147311) Pro_DTO013F5_2|g5869.t1
Penicillium roqueforti DTO027I6 Pro_DTO027I6_2|g646.t1
Penicillium roqueforti DTO032C6 Pro_DTO032C6_2|g6337.t1
Penicillium roqueforti DTO039G3 Pro_DTO039G3_2|g8479.t1
Penicillium roqueforti DTO046C5 Pro_DTO046C5_2|g3817.t1
Penicillium roqueforti DTO070G2 (CBS 147317) Pro_DTO070G2_2|g4531.t1
Penicillium roqueforti DTO081F9 (CBS 147318) Pro_DTO081F9_2|g8248.t1
Penicillium roqueforti DTO101D6 (CBS 147325) Pro_DTO101D6_2|g7336.t1
Penicillium roqueforti DTO102I9 (CBS 147326) Pro_DTO102I9_2|g7928.t1
Penicillium roqueforti DTO126G2 (CBS 147330) Pro_DTO126G2_2|g5312.t1
Penicillium roqueforti DTO127F7 (CBS 147331) Pro_DTO127F7_2|g8507.t1
Penicillium roqueforti DTO127F9 (CBS 147332) Pro_DTO127F9_2|g2678.t1
Penicillium roqueforti DTO130C1 (CBS 147333) Pro_DTO130C1_2|g3396.t1
Penicillium roqueforti DTO163C3 (CBS 147337) Pro_DTO163C3_2|g9593.t1
Penicillium roqueforti DTO163F5 (CBS 147338) Pro_DTO163F5_2|g7236.t1
Penicillium roqueforti DTO163G4 (CBS 147339) Pro_DTO163G4_2|g7324.t1
Penicillium roqueforti DTO265D5 (CBS 147372) Pro_DTO265D5_2|g7793.t1
Penicillium roqueforti DTO369A1 (CBS 147354) Pro_DTO369A1_2|g6103.t1
Penicillium roqueforti DTO375B1 (CBS 147355) Pro_DTO375B1_2|g4309.t1
Penicillium roqueforti DTO377G2 (LCP 96.3914a) Pro_DTO377G2_2|g5558.t1
Penicillium roqueforti LCP96 04111 Pro_DTO377G3_2|g8230.t1

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO012A7_2|g8254.t1
MSRKLAPEANRILFVKNLNYNVTAEQLFDLFGKFGPIRQIRQGIANNSKGTAFVVYEDVHDAKQACDKLNGFNFQ
NRYLVVLYHQPEKMVRTKEDITERQENLERLKQQHGIE*
Coding >Pro_DTO012A7_2|g8254.t1
ATGAGCCGAAAGCTCGCCCCCGAAGCCAATCGGATTCTCTTCGTCAAGAACCTCAACTACAACGTAACGGCAGAG
CAACTTTTCGACCTGTTTGGCAAATTTGGTCCCATTCGTCAAATTCGCCAGGGTATCGCCAATAACTCCAAGGGA
ACCGCATTTGTTGTCTACGAAGACGTCCATGACGCAAAGCAGGCATGCGATAAACTAAATGGCTTCAATTTCCAA
AACAGATATTTGGTCGTCCTCTATCACCAGCCAGAGAAGATGGTGCGGACGAAAGAGGATATTACGGAAAGACAA
GAGAACTTAGAGAGGCTGAAACAACAACATGGGATAGAATGA
Transcript >Pro_DTO012A7_2|g8254.t1
ATGAGCCGAAAGCTCGCCCCCGAAGCCAATCGGATTCTCTTCGTCAAGAACCTCAACTACAACGTAACGGCAGAG
CAACTTTTCGACCTGTTTGGCAAATTTGGTCCCATTCGTCAAATTCGCCAGGGTATCGCCAATAACTCCAAGGGA
ACCGCATTTGTTGTCTACGAAGACGTCCATGACGCAAAGCAGGCATGCGATAAACTAAATGGCTTCAATTTCCAA
AACAGATATTTGGTCGTCCTCTATCACCAGCCAGAGAAGATGGTGCGGACGAAAGAGGATATTACGGAAAGACAA
GAGAACTTAGAGAGGCTGAAACAACAACATGGGATAGAATGA
Gene >Pro_DTO012A7_2|g8254.t1
ATGAGCCGAAAGCTCGCCCCCGAAGCCAATCGGTACGTGAGAATTACTTTTTCCATGCCCCTCCCGGATTCTCAG
CACAAGTGCCATTTCGCCATCAACAGCTTGATCGTTGGGTCGAGCAGATCCCTGACATTTGGAAGTGACTCGCGC
TAACCTCTTTTTTCTCTTTTTTACAGGATTCTCTTCGTCAAGAACCTCAAGTATGTACCTGATCATTCCGCTGCT
TGGCTCCGGCTCGATTCTCCGGCAGATCAGCCGTGCAGCTCCCCATTTACAATCGCGATCAGATCGCTGACATCT
TTCTCAAAAGCTACAACGTAACGGCAGAGCAACTTTTCGACCTGTTTGGCAAATTTGGTCCCATTCGGTAATGTC
ACCCATGGTCGCGTGCGTTTGAACCCGATCTAATACCATTTCATCTACAGTCAAATTCGCCAGGGTATCGCCAAT
AACTCCAAGGGAACCGCATTTGTTGTCTACGAAGACGTCCATGACGCAAAGCAGGCATGCGATAAACTAAATGGC
TTCAATTTCCAAAACAGATATTTGGTCGGTACGTGTTGCATATGGATCTAATGAGCGTCCAGAATTATTGGAAGA
TGACTAACTTTGGATGTTATAGTCCTCTATCACCAGCCAGAGAAGATGGTGCGGACGAAAGAGGATATTACGGAA
AGACAAGAGAACTTAGAGAGGCTGAAACAACAACATGGGATAGAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail