© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 353 |
|---|---|
| Total assembly length (Mbp) | 30.28 |
| Assembly GC content (%) | 47.82 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 23 |
| N50 length (bp) | 400091 |
| Total repeats (#) | 8642 |
| Repetitive content (bp, %) | 1982308 (6.55%) |
| Genes | 10362 |
| Gene length (median) | 1377 |
| Transcript length (median) | 1215 |
| Exon length (median) | 228 |
| CDS length (median) | 1215 |
| Protein length (median) | 405 |
| Spliced genes (total, %) | 8302 (80.12%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 342.26 |
| Coding content of assembly (bp, %) | 15017874 (49.6%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4069 |
| Genes with PFAM (total, %) | 7634 (73.67%) |
| Genes with GO (total, %) | 4903 (47.32%) |
| Genes with signalP (total, %) | 736 (7.1%) |
| Genes with TMHMM (total, %) | 2070 (19.98%) |
| Genes annotated as TF (total, %) | 420 (4.05%) |
| Genes annotated as MEROPS protease (total, %) | 329 (3.18%) |
| Genes annotated as CAZyme (total, %) | 388 (3.74%) |
| Secondary metabolism gene cluster | 36 |
| CEGMA completeness (%) | 99.56 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |