© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 1725 |
|---|---|
| Total assembly length (Mbp) | 27.11 |
| Assembly GC content (%) | 51.49 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 189 |
| N50 length (bp) | 41529 |
| Genes | 8422 |
| Gene length (median) | 1382 |
| Transcript length (median) | 1233 |
| Exon length (median) | 294 |
| CDS length (median) | 1230 |
| Protein length (median) | 410 |
| Spliced genes (total, %) | 6294 (74.73%) |
| Exons per gene (median) | 2 |
| Intron length (median) | 64 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 310.68 |
| Coding content of assembly (bp, %) | 12740001 (47.0%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 3866 |
| Genes with PFAM (total, %) | 6038 (71.69%) |
| Genes with GO (total, %) | 3785 (44.94%) |
| Genes with signalP (total, %) | 675 (8.01%) |
| Genes with TMHMM (total, %) | 1496 (17.76%) |
| Genes annotated as TF (total, %) | 236 (2.8%) |
| Genes annotated as MEROPS protease (total, %) | 274 (3.25%) |
| Genes annotated as CAZyme (total, %) | 216 (2.56%) |
| Secondary metabolism gene cluster | 32 |
| CEGMA completeness (%) | 98.03 |
| BUSCO2 completeness (fungi_odb9) | Complete: 94.48% (Single-copy: 93.79%, Duplicated: 0.69%), Fragmented: 3.79%, Missing: 1.72% |