© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|995 |
| Gene name | |
| Location | Contig_137:4956..6177 |
| Strand | - |
| Gene length (bp) | 1221 |
| Transcript length (bp) | 903 |
| Coding sequence length (bp) | 903 |
| Protein length (aa) | 301 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04117 | Mpv17_PMP22 | Mpv17 / PMP22 family | 4.6E-10 | 203 | 258 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9ZS51|PMP22_ARATH | Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1 | 90 | 273 | 6.0E-11 |
| sp|Q54GD8|PX24C_DICDI | PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1 | 86 | 266 | 3.0E-10 |
| sp|Q2KIY1|PXMP2_BOVIN | Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3 | 90 | 263 | 5.0E-10 |
| sp|Q54FR4|PX24D_DICDI | PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1 | 93 | 262 | 4.0E-07 |
| sp|Q4IPX8|SYM1_GIBZE | Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SYM1 PE=3 SV=1 | 89 | 264 | 3.0E-06 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9ZS51|PMP22_ARATH | Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1 | 90 | 273 | 6.0E-11 |
| sp|Q54GD8|PX24C_DICDI | PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1 | 86 | 266 | 3.0E-10 |
| sp|Q2KIY1|PXMP2_BOVIN | Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3 | 90 | 263 | 5.0E-10 |
| sp|Q54FR4|PX24D_DICDI | PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1 | 93 | 262 | 4.0E-07 |
| sp|Q4IPX8|SYM1_GIBZE | Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SYM1 PE=3 SV=1 | 89 | 264 | 3.0E-06 |
| sp|Q7SCY7|SYM1_NEUCR | Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sym-1 PE=3 SV=2 | 90 | 259 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 142 | 164 | 22 |
| 2 | 177 | 199 | 22 |
| 3 | 242 | 261 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 5168 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|995 MTAQPQPSIAPNPDNHHPPPLSTAPDDIKPSAMSVKFERETVKQTAQSVLSSAVPEHAGIPGTSGRHPLAERVGT ALTGGMKSAGTEGYLAAYIKQLESNPLRTKMLTAGSLAGTQELIASWLAKDRNKHGHYFTSRVPKMAAYGAIVSA PLGHFLIWLLQSVFRGRTSLKAKVMQIVVSNLLIAPIQNSIYLVAMALIAGARTYHQVRATVKVGFWRVMRVSWI TSPICLAFAQKFLPDELWVPFFNLVSFVIGTYINTVTKKKRLAALRRKHFGDGRNNGMGRSDDYPPPPMGPNPPY * |
| Coding | >Ophun1|995 ATGACCGCTCAACCTCAGCCCAGCATCGCACCCAACCCCGACAACCACCACCCACCACCCCTCTCAACAGCCCCC GACGATATCAAGCCCAGCGCCATGTCGGTCAAGTTTGAGCGCGAGACGGTCAAGCAGACGGCCCAGAGCGTCCTC TCCAGCGCCGTCCCGGAACATGCCGGTATCCCCGGCACCAGCGGACGGCATCCGCTTGCCGAGCGGGTCGGCACT GCTCTTACGGGGGGGATGAAGAGCGCCGGGACTGAGGGATATCTAGCTGCGTATATCAAGCAGCTCGAGTCCAAC CCGCTGCGGACCAAGATGCTTACCGCCGGCTCCCTCGCCGGCACGCAGGAGCTCATCGCCTCGTGGCTTGCCAAG GATCGCAACAAGCACGGCCATTACTTTACCTCTCGCGTCCCCAAGATGGCAGCTTACGGCGCCATCGTCAGCGCG CCCCTCGGCCATTTCCTCATCTGGCTTCTGCAGAGCGTCTTCCGCGGCCGCACCAGTCTCAAGGCAAAGGTGATG CAGATTGTCGTCAGCAACTTGCTTATTGCGCCCATTCAAAACAGCATCTATCTGGTCGCCATGGCTCTGATCGCC GGCGCTCGCACCTATCATCAGGTCCGCGCCACCGTCAAGGTTGGCTTCTGGCGAGTCATGCGCGTCTCATGGATC ACATCGCCCATCTGCCTCGCCTTTGCGCAAAAGTTCCTCCCCGATGAGCTCTGGGTTCCCTTCTTCAACCTCGTG TCCTTTGTCATCGGCACCTACATCAACACCGTCACCAAGAAGAAGCGCCTCGCCGCCCTCCGAAGGAAACACTTT GGCGACGGCCGCAACAACGGCATGGGCCGATCCGACGATTATCCTCCGCCACCCATGGGACCCAACCCGCCTTAC TAG |
| Transcript | >Ophun1|995 ATGACCGCTCAACCTCAGCCCAGCATCGCACCCAACCCCGACAACCACCACCCACCACCCCTCTCAACAGCCCCC GACGATATCAAGCCCAGCGCCATGTCGGTCAAGTTTGAGCGCGAGACGGTCAAGCAGACGGCCCAGAGCGTCCTC TCCAGCGCCGTCCCGGAACATGCCGGTATCCCCGGCACCAGCGGACGGCATCCGCTTGCCGAGCGGGTCGGCACT GCTCTTACGGGGGGGATGAAGAGCGCCGGGACTGAGGGATATCTAGCTGCGTATATCAAGCAGCTCGAGTCCAAC CCGCTGCGGACCAAGATGCTTACCGCCGGCTCCCTCGCCGGCACGCAGGAGCTCATCGCCTCGTGGCTTGCCAAG GATCGCAACAAGCACGGCCATTACTTTACCTCTCGCGTCCCCAAGATGGCAGCTTACGGCGCCATCGTCAGCGCG CCCCTCGGCCATTTCCTCATCTGGCTTCTGCAGAGCGTCTTCCGCGGCCGCACCAGTCTCAAGGCAAAGGTGATG CAGATTGTCGTCAGCAACTTGCTTATTGCGCCCATTCAAAACAGCATCTATCTGGTCGCCATGGCTCTGATCGCC GGCGCTCGCACCTATCATCAGGTCCGCGCCACCGTCAAGGTTGGCTTCTGGCGAGTCATGCGCGTCTCATGGATC ACATCGCCCATCTGCCTCGCCTTTGCGCAAAAGTTCCTCCCCGATGAGCTCTGGGTTCCCTTCTTCAACCTCGTG TCCTTTGTCATCGGCACCTACATCAACACCGTCACCAAGAAGAAGCGCCTCGCCGCCCTCCGAAGGAAACACTTT GGCGACGGCCGCAACAACGGCATGGGCCGATCCGACGATTATCCTCCGCCACCCATGGGACCCAACCCGCCTTAC TAG |
| Gene | >Ophun1|995 ATGACCGCTCAAGTATGTATTCGCAGATTCAATAGTAAACCCCCAGCCAAGTCTTTAAACCCACCCGCCAAAACC CCGACGAACCCTGCAGATCGGCGCCTCCAGCGGATAGATACCTCTAGTGTTGAATCGGTGATACACAGACGGGTA TTACGTGAGCCAACCCCAGCAAGGTAAACAAACTCATTGGCCAGCCTCAGCCCAGCATCGCACCCAACCCCGACA ACCACCACCCACCACCCCTCTCAACAGCCCCCGACGATATCAAGCCCAGCGCCATGTCGGTCAAGTTTGAGCGCG AGACGGTCAAGCAGACGGCCCAGAGCGTCCTCTCCAGCGCCGTCCCGGAACATGCCGGTATCCCCGGCACCAGCG GACGGCATCCGCTTGCCGAGCGGGTCGGCACTGCTCTTACGGGGGGGATGAAGAGCGCCGGGACTGAGGGATATC TAGCTGTATGTCCCAAGCTTCATTCACCCTCTTCCTTCTTCCACCAGTACATCAAAACTGACGTGCTCTTCTCCG TAGGCGTATATCAAGCAGCTCGAGTCCAACCCGCTGCGGACCAAGATGCTTACCGCCGGCTCCCTCGCCGGCACG CAGGAGCTCATCGCCTCGTGGCTTGCCAAGGATCGCAACAAGCACGGCCATTACTTTACCTCTCGCGTCCCCAAG ATGGCAGCTTACGGCGCCATCGTCAGCGCGCCCCTCGGCCATTTCCTCATCTGGCTTCTGCAGAGCGTCTTCCGC GGCCGCACCAGTCTCAAGGCAAAGGTGATGCAGATTGTCGTCAGCAACTTGCTTGTACGTTCCCTTTTTGGACAA TTTGAACCTCTTGGATCCCTCGAACCCGACTGACGGCTTTAGATTGCGCCCATTCAAAACAGCATCTATCTGGTC GCCATGGCTCTGATCGCCGGCGCTCGCACCTATCATCAGGTCCGCGCCACCGTCAAGGTTGGCTTCTGGCGAGTC ATGCGCGTCTCATGGATCACATCGCCCATCTGCCTCGCCTTTGCGCAAAAGTTCCTCCCCGATGAGCTCTGGGTT CCCTTCTTCAACCTCGTGTCCTTTGTCATCGGCACCTACATCAACACCGTCACCAAGAAGAAGCGCCTCGCCGCC CTCCGAAGGAAACACTTTGGCGACGGCCGCAACAACGGCATGGGCCGATCCGACGATTATCCTCCGCCACCCATG GGACCCAACCCGCCTTACTAG |