Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|981
Gene name
LocationContig_136:11388..12124
Strand-
Gene length (bp)736
Transcript length (bp)654
Coding sequence length (bp)654
Protein length (aa) 218

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PFAM Domains

(None)

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9P6P8|YIP4_SCHPO Protein YIP4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.13c PE=1 SV=1 70 217 3.0E-14
sp|Q6IQ85|YIPF6_DANRE Protein YIPF6 OS=Danio rerio GN=yipf6 PE=2 SV=1 77 217 1.0E-13
sp|Q8BR70|YIPF6_MOUSE Protein YIPF6 OS=Mus musculus GN=Yipf6 PE=1 SV=1 57 217 1.0E-13
sp|A6QLC6|YIPF6_BOVIN Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1 57 217 2.0E-13
sp|Q54RZ2|YIPF6_DICDI Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3 SV=2 77 217 3.0E-13
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9P6P8|YIP4_SCHPO Protein YIP4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.13c PE=1 SV=1 70 217 3.0E-14
sp|Q6IQ85|YIPF6_DANRE Protein YIPF6 OS=Danio rerio GN=yipf6 PE=2 SV=1 77 217 1.0E-13
sp|Q8BR70|YIPF6_MOUSE Protein YIPF6 OS=Mus musculus GN=Yipf6 PE=1 SV=1 57 217 1.0E-13
sp|A6QLC6|YIPF6_BOVIN Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1 57 217 2.0E-13
sp|Q54RZ2|YIPF6_DICDI Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3 SV=2 77 217 3.0E-13
sp|Q96EC8|YIPF6_HUMAN Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=1 SV=2 57 217 3.0E-13
sp|Q28CH8|YIPF6_XENTR Protein YIPF6 OS=Xenopus tropicalis GN=yipf6 PE=2 SV=1 57 217 3.0E-13
sp|Q4QQU5|YIPF6_RAT Protein YIPF6 OS=Rattus norvegicus GN=Yipf6 PE=1 SV=1 57 217 1.0E-12
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 43 0.45

Transmembrane Domains

Domain # Start End Length
1 166 183 17
2 190 212 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|981
MTSSSSEGAHYSHPSLEDDDLIDPDNVDLNALDPLSAQPSSAQTLTGNIGSQLPSRPLDGSFLTSTIPGEDRRAP
QNTIDETVWDTLSRDLRAVWEKLREVLYPKYLLGGTMFDFEAGFRGAYSNMRGAGIAGTREELTGLASRVMDSEA
LLQGNMSSGLRNWDMWGPLVFCLLLSLLLSFTARSDQKDAVFSGVFAIIWLGEAVVTLQIKLLGGNM*
Coding >Ophun1|981
ATGACTTCGTCCTCCAGTGAAGGAGCTCACTACAGTCATCCCTCTCTAGAAGACGACGACCTTATTGATCCTGAC
AATGTCGATCTGAATGCTCTTGATCCGCTATCCGCGCAGCCCTCATCTGCCCAGACTCTGACAGGCAACATCGGC
TCTCAGCTGCCTTCGCGGCCACTGGACGGAAGCTTCTTGACTTCCACGATTCCGGGAGAGGACAGACGGGCACCA
CAGAACACGATTGATGAGACCGTCTGGGATACTCTCAGCCGCGATCTACGCGCGGTCTGGGAGAAGCTGCGGGAA
GTTTTGTATCCGAAATATCTGCTGGGCGGGACGATGTTCGACTTTGAAGCCGGCTTCCGCGGCGCTTACTCTAAC
ATGCGCGGTGCTGGTATCGCCGGCACCAGGGAAGAGCTGACTGGTCTCGCCAGCCGAGTTATGGATTCTGAGGCG
CTGCTGCAGGGCAATATGAGTTCCGGTCTTCGAAATTGGGACATGTGGGGTCCGCTTGTATTTTGCCTGCTGCTC
AGCTTGCTGCTGAGCTTCACCGCCCGGTCGGACCAAAAGGACGCTGTGTTCAGCGGCGTCTTTGCTATCATATGG
CTCGGAGAGGCGGTGGTCACATTGCAAATCAAGCTCCTCGGCGGAAATATGTGA
Transcript >Ophun1|981
ATGACTTCGTCCTCCAGTGAAGGAGCTCACTACAGTCATCCCTCTCTAGAAGACGACGACCTTATTGATCCTGAC
AATGTCGATCTGAATGCTCTTGATCCGCTATCCGCGCAGCCCTCATCTGCCCAGACTCTGACAGGCAACATCGGC
TCTCAGCTGCCTTCGCGGCCACTGGACGGAAGCTTCTTGACTTCCACGATTCCGGGAGAGGACAGACGGGCACCA
CAGAACACGATTGATGAGACCGTCTGGGATACTCTCAGCCGCGATCTACGCGCGGTCTGGGAGAAGCTGCGGGAA
GTTTTGTATCCGAAATATCTGCTGGGCGGGACGATGTTCGACTTTGAAGCCGGCTTCCGCGGCGCTTACTCTAAC
ATGCGCGGTGCTGGTATCGCCGGCACCAGGGAAGAGCTGACTGGTCTCGCCAGCCGAGTTATGGATTCTGAGGCG
CTGCTGCAGGGCAATATGAGTTCCGGTCTTCGAAATTGGGACATGTGGGGTCCGCTTGTATTTTGCCTGCTGCTC
AGCTTGCTGCTGAGCTTCACCGCCCGGTCGGACCAAAAGGACGCTGTGTTCAGCGGCGTCTTTGCTATCATATGG
CTCGGAGAGGCGGTGGTCACATTGCAAATCAAGCTCCTCGGCGGAAATATGTGA
Gene >Ophun1|981
ATGACTTCGTCCTCCAGTGAAGGAGCTCACTACAGTCATCCCTCTCTAGAAGACGACGACCTTATTGATCCTGAC
AATGGTATGATGAGATGGTGGCTACATGGCGGGCGCTCGCCTTATCTCCAGAAACTTACTCACTTTACAAATACG
AGTCGCATTAGTCGATCTGAATGCTCTTGATCCGCTATCCGCGCAGCCCTCATCTGCCCAGACTCTGACAGGCAA
CATCGGCTCTCAGCTGCCTTCGCGGCCACTGGACGGAAGCTTCTTGACTTCCACGATTCCGGGAGAGGACAGACG
GGCACCACAGAACACGATTGATGAGACCGTCTGGGATACTCTCAGCCGCGATCTACGCGCGGTCTGGGAGAAGCT
GCGGGAAGTTTTGTATCCGAAATATCTGCTGGGCGGGACGATGTTCGACTTTGAAGCCGGCTTCCGCGGCGCTTA
CTCTAACATGCGCGGTGCTGGTATCGCCGGCACCAGGGAAGAGCTGACTGGTCTCGCCAGCCGAGTTATGGATTC
TGAGGCGCTGCTGCAGGGCAATATGAGTTCCGGTCTTCGAAATTGGGACATGTGGGGTCCGCTTGTATTTTGCCT
GCTGCTCAGCTTGCTGCTGAGCTTCACCGCCCGGTCGGACCAAAAGGACGCTGTGTTCAGCGGCGTCTTTGCTAT
CATATGGCTCGGAGAGGCGGTGGTCACATTGCAAATCAAGCTCCTCGGCGGAAATATGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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