© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|764 |
| Gene name | |
| Location | Contig_1261:2091..2980 |
| Strand | + |
| Gene length (bp) | 889 |
| Transcript length (bp) | 456 |
| Coding sequence length (bp) | 456 |
| Protein length (aa) | 152 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08636 | Pkr1 | ER protein Pkr1 | 1.0E-28 | 4 | 73 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q03880|PKR1_YEAST | V-type ATPase assembly factor PKR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PKR1 PE=1 SV=1 | 9 | 115 | 3.0E-13 |
| sp|Q9P7Y3|PKR1_SCHPO | V-type ATPase assembly factor pkr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pkr1 PE=3 SV=1 | 4 | 70 | 1.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0070072 | vacuolar proton-transporting V-type ATPase complex assembly | Yes |
| GO:0043933 | protein-containing complex organization | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0016043 | cellular component organization | No |
| GO:0070071 | proton-transporting two-sector ATPase complex assembly | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0009987 | cellular process | No |
| GO:0070070 | proton-transporting V-type ATPase complex assembly | No |
| GO:0008150 | biological_process | No |
| GO:0022607 | cellular component assembly | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 48 | 67 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|764 MASSLATDLWDAIFTPGTTPALLRATNISFACLQLVLGALLAATASLHFVMLSGLCAVLWWSVNWFVAEMEAEKR KLSSRGDESSDTEVEESVGGARSGKSTGELRLRTGGGPPSLDGALSSNGEDDGGDEGADELRERGVDVEDAEVDA R* |
| Coding | >Ophun1|764 ATGGCGTCTTCGTTGGCGACGGACCTCTGGGACGCCATCTTCACGCCCGGAACGACACCTGCGCTCCTGCGCGCG ACAAACATCTCGTTCGCCTGCCTGCAGCTCGTCCTCGGCGCGCTGCTAGCCGCGACGGCGAGTCTGCACTTCGTC ATGCTTTCGGGACTGTGCGCTGTGCTGTGGTGGTCTGTCAACTGGTTCGTTGCCGAGATGGAGGCCGAGAAGCGG AAGCTGTCGTCGCGGGGGGACGAGAGTAGCGATACCGAGGTTGAGGAGTCGGTTGGGGGGGCGAGGTCGGGGAAG TCGACGGGGGAGTTGAGGTTGAGGACTGGTGGTGGTCCGCCTTCGTTGGATGGGGCCTTGTCGAGTAACGGCGAA GACGATGGAGGCGATGAAGGCGCCGACGAACTGCGGGAGCGTGGTGTAGACGTTGAGGATGCCGAGGTAGATGCC CGATAG |
| Transcript | >Ophun1|764 ATGGCGTCTTCGTTGGCGACGGACCTCTGGGACGCCATCTTCACGCCCGGAACGACACCTGCGCTCCTGCGCGCG ACAAACATCTCGTTCGCCTGCCTGCAGCTCGTCCTCGGCGCGCTGCTAGCCGCGACGGCGAGTCTGCACTTCGTC ATGCTTTCGGGACTGTGCGCTGTGCTGTGGTGGTCTGTCAACTGGTTCGTTGCCGAGATGGAGGCCGAGAAGCGG AAGCTGTCGTCGCGGGGGGACGAGAGTAGCGATACCGAGGTTGAGGAGTCGGTTGGGGGGGCGAGGTCGGGGAAG TCGACGGGGGAGTTGAGGTTGAGGACTGGTGGTGGTCCGCCTTCGTTGGATGGGGCCTTGTCGAGTAACGGCGAA GACGATGGAGGCGATGAAGGCGCCGACGAACTGCGGGAGCGTGGTGTAGACGTTGAGGATGCCGAGGTAGATGCC CGATAG |
| Gene | >Ophun1|764 ATGGCGTCTTCGTTGGCGACGGACCTCTGGGACGCCATCTTCACGCCCGGAACGACACCTGCGCTCCTGCGCGCG ACAAACATCTCGTTCGCCTGCCTGCAGCTCGTCCTCGGCGCGCTGCTAGCCGCGACGGCGAGTCTGCACTTCGTC ATGCTTTCGGGACTGTGCGCTGTGCTGTGGTGGTCTGTCAACTGGTTCGTTGCCGAGATGGAGGCCGAGAAGCGG AAGCTGTCGTCGCGGGGGGACGAGAGTAGCGATACCGAGGTTGAGGAGTCGGTTGGGGGGGCGAGGTCGGGGAAG TCGACGGGGGAGTTGAGGTTGAGGACTGGTGGTGGTCCGCCTTCGTTGGATGGGGCCTTGTCGAGTGTGAGTACG GAGGATGAGTGGGAGAAGGTCTCTGGGGGGGAGAGGAGCAAGGAGAGTTGATGGCTATCTGTTGATTTACTTTGC GGTACGGGCATGACGAAGCGACGAGTTGTCTCGAGCATCAACAGGCTCTTGACCAGAAGACATCTTACTTTGCGG TACGGGCTTCACAAAGTGACGAGTTGTCTCGATCATCAACAGATGGCCTTGACTAGAAGCACCATGTGAAACAGC AGAGTCTATAAAACAAGATGAAAGCAAACCAGCTCAAGATCTCTCAAACAAAGCCCCCCTAAAGAACCCTCAACC TCCTTGTCGCAAAAGCCGCCACAACCGCACTCAAAGCCCCAATAAAAAGACAAACAGAAATGGCGCTCGGTCCCG AACCACCAACCGGAACCTTGGACTCTTCCCCCCCCCCGCCCGGCTCAAGAACGGCGAAGACGATGGAGGCGATGA AGGCGCCGACGAACTGCGGGAGCGTGGTGTAGACGTTGAGGATGCCGAGGTAGATGCCCGATAG |