© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|7287 |
| Gene name | |
| Location | Contig_898:4551..5529 |
| Strand | + |
| Gene length (bp) | 978 |
| Transcript length (bp) | 978 |
| Coding sequence length (bp) | 978 |
| Protein length (aa) | 326 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 1.2E-20 | 22 | 148 |
| PF08659 | KR | KR domain | 4.8E-11 | 23 | 130 |
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 5.6E-09 | 29 | 149 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9VLU5|WWOX_DROME | WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1 | 21 | 312 | 2.0E-19 |
| sp|Q5F389|WWOX_CHICK | WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2 | 20 | 305 | 4.0E-19 |
| sp|Q5SS80|DHR13_MOUSE | Dehydrogenase/reductase SDR family member 13 OS=Mus musculus GN=Dhrs13 PE=1 SV=1 | 3 | 318 | 8.0E-19 |
| sp|Q8NBN7|RDH13_HUMAN | Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2 | 21 | 314 | 2.0E-18 |
| sp|Q8CEE7|RDH13_MOUSE | Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=1 SV=1 | 21 | 244 | 4.0E-18 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9VLU5|WWOX_DROME | WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1 | 21 | 312 | 2.0E-19 |
| sp|Q5F389|WWOX_CHICK | WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2 | 20 | 305 | 4.0E-19 |
| sp|Q5SS80|DHR13_MOUSE | Dehydrogenase/reductase SDR family member 13 OS=Mus musculus GN=Dhrs13 PE=1 SV=1 | 3 | 318 | 8.0E-19 |
| sp|Q8NBN7|RDH13_HUMAN | Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2 | 21 | 314 | 2.0E-18 |
| sp|Q8CEE7|RDH13_MOUSE | Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=1 SV=1 | 21 | 244 | 4.0E-18 |
| sp|Q8TC12|RDH11_HUMAN | Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2 | 21 | 295 | 5.0E-18 |
| sp|A2RVM0|TIC32_ARATH | Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1 | 21 | 305 | 5.0E-18 |
| sp|Q8BYK4|RDH12_MOUSE | Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1 | 21 | 310 | 2.0E-17 |
| sp|Q96NR8|RDH12_HUMAN | Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3 | 21 | 310 | 4.0E-17 |
| sp|Q6UX07|DHR13_HUMAN | Dehydrogenase/reductase SDR family member 13 OS=Homo sapiens GN=DHRS13 PE=2 SV=1 | 3 | 318 | 7.0E-17 |
| sp|P59837|RDH12_BOVIN | Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1 | 21 | 310 | 1.0E-16 |
| sp|Q9QYF1|RDH11_MOUSE | Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=1 SV=2 | 21 | 296 | 1.0E-16 |
| sp|Q17QU7|DHR13_BOVIN | Dehydrogenase/reductase SDR family member 13 OS=Bos taurus GN=DHRS13 PE=2 SV=1 | 3 | 318 | 4.0E-16 |
| sp|Q91WL8|WWOX_MOUSE | WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1 | 18 | 318 | 2.0E-15 |
| sp|Q9HBH5|RDH14_HUMAN | Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1 | 21 | 243 | 2.0E-13 |
| sp|Q8VBZ0|DHRSX_MOUSE | Dehydrogenase/reductase SDR family member on chromosome X homolog OS=Mus musculus GN=Dhrsx PE=1 SV=2 | 21 | 307 | 2.0E-13 |
| sp|Q6RVV4|TIC32_PEA | Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1 | 12 | 289 | 2.0E-13 |
| sp|Q9ERI6|RDH14_MOUSE | Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1 | 21 | 283 | 4.0E-13 |
| sp|Q5R9W5|WWOX_PONAB | WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1 | 18 | 305 | 2.0E-12 |
| sp|Q9Y140|DHRS7_DROME | Dehydrogenase/reductase SDR family protein 7-like OS=Drosophila melanogaster GN=CG7601 PE=2 SV=1 | 21 | 296 | 3.0E-12 |
| sp|Q9NZC7|WWOX_HUMAN | WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1 | 18 | 305 | 3.0E-12 |
| sp|Q8N5I4|DHRSX_HUMAN | Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2 | 22 | 279 | 2.0E-09 |
| sp|Q803A8|WWOX_DANRE | WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1 | 20 | 289 | 2.0E-08 |
| sp|Q9ZAU1|DNRU_STRPE | Putative daunorubicin C-13 ketoreductase DnrU OS=Streptomyces peucetius GN=dnrU PE=3 SV=1 | 15 | 136 | 2.0E-08 |
| sp|P31808|YCIK_ECOLI | Uncharacterized oxidoreductase YciK OS=Escherichia coli (strain K12) GN=yciK PE=1 SV=3 | 17 | 233 | 1.0E-07 |
| sp|Q53877|DNRU_STRS5 | Putative daunorubicin C-13 ketoreductase DnrU OS=Streptomyces sp. (strain C5) PE=3 SV=1 | 12 | 136 | 2.0E-07 |
| sp|Q05016|YM71_YEAST | NADP-dependent 3-hydroxy acid dehydrogenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR226C PE=1 SV=1 | 20 | 114 | 2.0E-07 |
| sp|Q39617|POR_CHLRE | Protochlorophyllide reductase, chloroplastic OS=Chlamydomonas reinhardtii GN=PORA PE=3 SV=1 | 22 | 238 | 3.0E-07 |
| sp|P0AEK3|FABG_SHIFL | 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Shigella flexneri GN=fabG PE=3 SV=1 | 18 | 241 | 2.0E-06 |
| sp|P0AEK2|FABG_ECOLI | 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Escherichia coli (strain K12) GN=fabG PE=1 SV=1 | 18 | 241 | 2.0E-06 |
| sp|P35320|OXIR_STRLI | Probable oxidoreductase OS=Streptomyces lividans PE=3 SV=1 | 21 | 241 | 2.0E-06 |
| sp|P0C0Y4|MTDH_ALTAL | Probable NADP-dependent mannitol dehydrogenase OS=Alternaria alternata PE=1 SV=2 | 18 | 178 | 2.0E-06 |
| sp|Q92247|BLI4_NEUCR | Putative oxidoreductase bli-4, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=bli-4 PE=1 SV=1 | 16 | 238 | 1.0E-05 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|7287 MSLLYNQLIKSMTYPTDSYAGKTIIITGSNSGLGKEAARHYVRLGASRLILAVRSPEKGASAKADIQGPEPNPAV QVSVWQLDMASYASVQDFAARVEAELDRVDVVLLNAGLARTRLVLAEGNEEMVTVNFVSTFLLAALLMPKLKETA RRYSSRRPTLTVVASATHGHTQLPQKSAPTGHLLQTINKGPPPTSSWAEHYAITKLLQVLTVRALSSLDQQPPPV TINCVNPGLCHSELARDMGWRFWLFKALVARSAEHGSRTLVHAAAQGPDSHGCYLSECAVVEPSAFVRSEVGRET QVRVWHELVGKLEAVRPGVVANFGP* |
| Coding | >Ophun1|7287 ATGAGTCTCTTATACAACCAGCTCATCAAGTCGATGACGTACCCGACCGACTCCTACGCCGGCAAAACCATCATC ATCACCGGCAGCAACTCCGGTCTCGGCAAGGAAGCAGCACGACACTACGTCCGCCTCGGAGCCAGCCGTCTCATC CTCGCCGTCCGCAGTCCAGAAAAGGGCGCCTCGGCCAAAGCCGACATCCAAGGCCCGGAGCCGAACCCAGCCGTC CAGGTATCGGTATGGCAACTGGACATGGCCAGCTACGCCAGCGTCCAGGACTTTGCCGCCCGGGTCGAGGCCGAG CTGGATAGGGTCGACGTGGTGCTTCTCAACGCGGGTCTGGCCCGGACGCGGCTCGTCTTGGCCGAGGGGAACGAG GAGATGGTGACGGTCAACTTCGTCTCGACTTTTCTCCTCGCCGCTCTCTTGATGCCCAAGCTCAAGGAAACTGCC CGACGATACAGCTCGAGGAGACCTACACTCACCGTCGTCGCCTCAGCCACCCACGGCCACACCCAGCTACCCCAA AAGTCAGCTCCAACGGGCCACCTCCTCCAGACCATCAACAAGGGACCCCCCCCAACCTCAAGCTGGGCAGAGCAC TACGCCATAACCAAGCTCCTCCAAGTGCTAACCGTCCGCGCGCTCTCCAGCCTCGACCAACAACCCCCCCCCGTA ACCATCAACTGCGTCAACCCAGGCCTCTGCCACTCGGAGCTGGCCCGCGACATGGGCTGGCGCTTCTGGCTCTTC AAGGCCCTCGTCGCCCGTTCCGCCGAGCACGGCAGCAGGACCTTGGTGCACGCCGCGGCGCAGGGCCCGGATTCG CACGGCTGCTATCTTTCCGAGTGTGCGGTTGTTGAGCCTTCGGCTTTTGTGAGGAGTGAGGTGGGGAGGGAGACG CAGGTGAGGGTTTGGCATGAGCTTGTTGGGAAGCTTGAGGCTGTTCGGCCAGGTGTTGTGGCTAATTTCGGGCCG TGA |
| Transcript | >Ophun1|7287 ATGAGTCTCTTATACAACCAGCTCATCAAGTCGATGACGTACCCGACCGACTCCTACGCCGGCAAAACCATCATC ATCACCGGCAGCAACTCCGGTCTCGGCAAGGAAGCAGCACGACACTACGTCCGCCTCGGAGCCAGCCGTCTCATC CTCGCCGTCCGCAGTCCAGAAAAGGGCGCCTCGGCCAAAGCCGACATCCAAGGCCCGGAGCCGAACCCAGCCGTC CAGGTATCGGTATGGCAACTGGACATGGCCAGCTACGCCAGCGTCCAGGACTTTGCCGCCCGGGTCGAGGCCGAG CTGGATAGGGTCGACGTGGTGCTTCTCAACGCGGGTCTGGCCCGGACGCGGCTCGTCTTGGCCGAGGGGAACGAG GAGATGGTGACGGTCAACTTCGTCTCGACTTTTCTCCTCGCCGCTCTCTTGATGCCCAAGCTCAAGGAAACTGCC CGACGATACAGCTCGAGGAGACCTACACTCACCGTCGTCGCCTCAGCCACCCACGGCCACACCCAGCTACCCCAA AAGTCAGCTCCAACGGGCCACCTCCTCCAGACCATCAACAAGGGACCCCCCCCAACCTCAAGCTGGGCAGAGCAC TACGCCATAACCAAGCTCCTCCAAGTGCTAACCGTCCGCGCGCTCTCCAGCCTCGACCAACAACCCCCCCCCGTA ACCATCAACTGCGTCAACCCAGGCCTCTGCCACTCGGAGCTGGCCCGCGACATGGGCTGGCGCTTCTGGCTCTTC AAGGCCCTCGTCGCCCGTTCCGCCGAGCACGGCAGCAGGACCTTGGTGCACGCCGCGGCGCAGGGCCCGGATTCG CACGGCTGCTATCTTTCCGAGTGTGCGGTTGTTGAGCCTTCGGCTTTTGTGAGGAGTGAGGTGGGGAGGGAGACG CAGGTGAGGGTTTGGCATGAGCTTGTTGGGAAGCTTGAGGCTGTTCGGCCAGGTGTTGTGGCTAATTTCGGGCCG TGA |
| Gene | >Ophun1|7287 ATGAGTCTCTTATACAACCAGCTCATCAAGTCGATGACGTACCCGACCGACTCCTACGCCGGCAAAACCATCATC ATCACCGGCAGCAACTCCGGTCTCGGCAAGGAAGCAGCACGACACTACGTCCGCCTCGGAGCCAGCCGTCTCATC CTCGCCGTCCGCAGTCCAGAAAAGGGCGCCTCGGCCAAAGCCGACATCCAAGGCCCGGAGCCGAACCCAGCCGTC CAGGTATCGGTATGGCAACTGGACATGGCCAGCTACGCCAGCGTCCAGGACTTTGCCGCCCGGGTCGAGGCCGAG CTGGATAGGGTCGACGTGGTGCTTCTCAACGCGGGTCTGGCCCGGACGCGGCTCGTCTTGGCCGAGGGGAACGAG GAGATGGTGACGGTCAACTTCGTCTCGACTTTTCTCCTCGCCGCTCTCTTGATGCCCAAGCTCAAGGAAACTGCC CGACGATACAGCTCGAGGAGACCTACACTCACCGTCGTCGCCTCAGCCACCCACGGCCACACCCAGCTACCCCAA AAGTCAGCTCCAACGGGCCACCTCCTCCAGACCATCAACAAGGGACCCCCCCCAACCTCAAGCTGGGCAGAGCAC TACGCCATAACCAAGCTCCTCCAAGTGCTAACCGTCCGCGCGCTCTCCAGCCTCGACCAACAACCCCCCCCCGTA ACCATCAACTGCGTCAACCCAGGCCTCTGCCACTCGGAGCTGGCCCGCGACATGGGCTGGCGCTTCTGGCTCTTC AAGGCCCTCGTCGCCCGTTCCGCCGAGCACGGCAGCAGGACCTTGGTGCACGCCGCGGCGCAGGGCCCGGATTCG CACGGCTGCTATCTTTCCGAGTGTGCGGTTGTTGAGCCTTCGGCTTTTGTGAGGAGTGAGGTGGGGAGGGAGACG CAGGTGAGGGTTTGGCATGAGCTTGTTGGGAAGCTTGAGGCTGTTCGGCCAGGTGTTGTGGCTAATTTCGGGCCG TGA |