Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|7206
Gene name
LocationContig_875:1516..2696
Strand-
Gene length (bp)1180
Transcript length (bp)948
Coding sequence length (bp)948
Protein length (aa) 316

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04321 RmlD_sub_bind RmlD substrate binding domain 8.4E-57 5 294
PF01370 Epimerase NAD dependent epimerase/dehydratase family 6.0E-23 6 199
PF16363 GDP_Man_Dehyd GDP-mannose 4,6 dehydratase 4.1E-10 39 154
PF07993 NAD_binding_4 Male sterility protein 5.4E-07 64 191
PF02719 Polysacc_synt_2 Polysaccharide biosynthesis protein 8.2E-06 47 154
PF01073 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family 2.9E-07 7 189

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q566L8|MAT2B_XENTR Methionine adenosyltransferase 2 subunit beta OS=Xenopus tropicalis GN=mat2b PE=2 SV=1 4 295 5.0E-61
sp|Q4QQZ4|MAT2B_XENLA Methionine adenosyltransferase 2 subunit beta OS=Xenopus laevis GN=mat2b PE=2 SV=1 1 295 2.0E-60
sp|Q99LB6|MAT2B_MOUSE Methionine adenosyltransferase 2 subunit beta OS=Mus musculus GN=Mat2b PE=1 SV=1 1 295 3.0E-60
sp|Q5U2R0|MAT2B_RAT Methionine adenosyltransferase 2 subunit beta OS=Rattus norvegicus GN=Mat2b PE=2 SV=1 1 295 3.0E-60
sp|Q5R4E0|MAT2B_PONAB Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii GN=MAT2B PE=2 SV=1 1 295 1.0E-59
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Swissprot ID Swissprot Description Start End E-value
sp|Q566L8|MAT2B_XENTR Methionine adenosyltransferase 2 subunit beta OS=Xenopus tropicalis GN=mat2b PE=2 SV=1 4 295 5.0E-61
sp|Q4QQZ4|MAT2B_XENLA Methionine adenosyltransferase 2 subunit beta OS=Xenopus laevis GN=mat2b PE=2 SV=1 1 295 2.0E-60
sp|Q99LB6|MAT2B_MOUSE Methionine adenosyltransferase 2 subunit beta OS=Mus musculus GN=Mat2b PE=1 SV=1 1 295 3.0E-60
sp|Q5U2R0|MAT2B_RAT Methionine adenosyltransferase 2 subunit beta OS=Rattus norvegicus GN=Mat2b PE=2 SV=1 1 295 3.0E-60
sp|Q5R4E0|MAT2B_PONAB Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii GN=MAT2B PE=2 SV=1 1 295 1.0E-59
sp|Q9NZL9|MAT2B_HUMAN Methionine adenosyltransferase 2 subunit beta OS=Homo sapiens GN=MAT2B PE=1 SV=1 1 295 1.0E-59
sp|Q5BJJ6|MAT2B_DANRE Methionine adenosyltransferase 2 subunit beta OS=Danio rerio GN=mat2b PE=2 SV=1 4 314 2.0E-59
sp|Q29RI9|MAT2B_BOVIN Methionine adenosyltransferase 2 subunit beta OS=Bos taurus GN=MAT2B PE=2 SV=1 1 295 5.0E-59
sp|D4GU71|AGL14_HALVD Probable low-salt glycan biosynthesis reductase Agl14 OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) GN=agl14 PE=3 SV=1 7 171 2.0E-21
sp|P26392|RMLD_SALTY dTDP-4-dehydrorhamnose reductase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rfbD PE=1 SV=1 5 150 6.0E-18
sp|P29781|RMLD_STRGR dTDP-4-dehydrorhamnose reductase OS=Streptomyces griseus GN=strL PE=1 SV=1 7 171 6.0E-18
sp|A0QTF8|RMLD_MYCS2 dTDP-4-dehydrorhamnose reductase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=rmlD PE=1 SV=1 1 152 2.0E-17
sp|P37760|RMLD_ECOLI dTDP-4-dehydrorhamnose reductase OS=Escherichia coli (strain K12) GN=rfbD PE=3 SV=2 5 148 6.0E-17
sp|P37778|RMLD_SHIFL dTDP-4-dehydrorhamnose reductase OS=Shigella flexneri GN=rfbD PE=1 SV=2 5 148 1.0E-16
sp|Q9L9E9|NOVS_STRNV dTDP-4-keto-6-deoxy-D-glucose reductase OS=Streptomyces niveus GN=novS PE=3 SV=1 7 265 4.0E-16
sp|Q46769|RMLD_ECOLX dTDP-4-dehydrorhamnose reductase OS=Escherichia coli GN=rfbD PE=1 SV=1 5 291 9.0E-16
sp|O66251|RMLD_AGGAC dTDP-4-dehydrorhamnose reductase OS=Aggregatibacter actinomycetemcomitans GN=rmlD PE=1 SV=1 6 249 4.0E-13
sp|P39631|SPSK_BACSU Spore coat polysaccharide biosynthesis protein SpsK OS=Bacillus subtilis (strain 168) GN=spsK PE=3 SV=3 6 295 2.0E-12
sp|Q2SYI1|RMLD_BURTA dTDP-4-dehydrorhamnose reductase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rmlD PE=1 SV=1 6 150 1.0E-08
sp|P9WH09|RMLD_MYCTU dTDP-4-dehydrorhamnose reductase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=rmlD PE=1 SV=1 1 152 4.0E-08
sp|P9WH08|RMLD_MYCTO dTDP-4-dehydrorhamnose reductase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=rmlD PE=3 SV=1 1 152 4.0E-08
sp|P55463|RMLD_RHISN Probable dTDP-4-dehydrorhamnose reductase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03570 PE=3 SV=1 46 166 4.0E-08
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GO

GO Term Description Terminal node
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity Yes
GO:0006694 steroid biosynthetic process Yes
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Yes
GO:0016229 steroid dehydrogenase activity No
GO:0008610 lipid biosynthetic process No
GO:0044238 primary metabolic process No
GO:0006629 lipid metabolic process No
GO:0003824 catalytic activity No
GO:0009058 biosynthetic process No
GO:0008152 metabolic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:1901576 organic substance biosynthetic process No
GO:0003674 molecular_function No
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors No
GO:0008202 steroid metabolic process No
GO:0008150 biological_process No
GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor No
GO:0016491 oxidoreductase activity No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 23 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|7206
MAQRSVLVTGATGLLGREVVNAFRLGGWKVKGTGHSRADGVDVLRIDLTKEDEVARALDEIKPQVIVHCAAEKAP
DKVAKDPEGARALNVAASASLAMLAADRGILVIFISTDYVFPGTAGDAPYEADATPRPTNLYGQTKLDGERAVLD
AYERVGRQGLGVVLRVPVLYGHAETPGESAVNSLLDSVWKAQTEGMEMTMDHWARRYPTNTEDVGRVCCDVAAKY
LDSQQQLPRVLQFSSEDNMTKYDICQRLGSMMGLSTASIKANTAGNEANSSAQRPYDCHLSTSALQGLGIDVSTC
DFDAWWRREVGAFRK*
Coding >Ophun1|7206
ATGGCCCAACGATCCGTACTTGTCACCGGCGCAACGGGGCTCCTCGGCCGAGAAGTAGTCAACGCCTTTCGCCTC
GGCGGATGGAAGGTCAAGGGCACTGGCCACTCTCGCGCCGATGGTGTCGACGTCCTCCGCATCGACTTGACCAAG
GAAGACGAGGTTGCGCGAGCGCTGGACGAGATCAAACCGCAGGTCATCGTTCACTGCGCAGCCGAAAAGGCGCCT
GACAAGGTGGCCAAGGACCCCGAAGGCGCGCGAGCGCTCAACGTGGCAGCCAGCGCAAGCCTCGCCATGCTAGCG
GCTGACCGGGGCATCCTCGTCATCTTCATCTCGACCGACTACGTATTCCCCGGCACGGCCGGCGATGCGCCCTAC
GAGGCCGATGCCACGCCGCGGCCGACCAACCTGTACGGGCAGACCAAGCTGGACGGCGAGCGGGCTGTGCTGGAC
GCGTACGAGCGGGTGGGCAGACAGGGTCTGGGCGTGGTGTTGCGCGTGCCTGTGCTCTACGGCCACGCGGAGACT
CCCGGCGAGAGCGCCGTCAACAGTCTGCTGGACTCGGTCTGGAAAGCACAGACGGAGGGGATGGAGATGACAATG
GACCACTGGGCGCGGCGGTACCCTACAAACACGGAAGACGTGGGACGCGTTTGTTGCGATGTGGCGGCCAAGTAT
CTCGACTCGCAACAGCAGCTGCCGAGGGTGCTGCAGTTTTCGAGCGAGGACAACATGACAAAGTACGACATCTGT
CAGCGCTTGGGCTCCATGATGGGCCTCTCGACGGCGAGCATCAAGGCAAACACGGCGGGAAATGAGGCCAATTCC
TCGGCGCAGCGGCCGTACGATTGCCACCTCAGCACGTCGGCCCTCCAGGGTCTGGGGATCGACGTGTCGACGTGC
GACTTTGACGCATGGTGGCGGCGCGAAGTAGGCGCCTTTCGAAAATGA
Transcript >Ophun1|7206
ATGGCCCAACGATCCGTACTTGTCACCGGCGCAACGGGGCTCCTCGGCCGAGAAGTAGTCAACGCCTTTCGCCTC
GGCGGATGGAAGGTCAAGGGCACTGGCCACTCTCGCGCCGATGGTGTCGACGTCCTCCGCATCGACTTGACCAAG
GAAGACGAGGTTGCGCGAGCGCTGGACGAGATCAAACCGCAGGTCATCGTTCACTGCGCAGCCGAAAAGGCGCCT
GACAAGGTGGCCAAGGACCCCGAAGGCGCGCGAGCGCTCAACGTGGCAGCCAGCGCAAGCCTCGCCATGCTAGCG
GCTGACCGGGGCATCCTCGTCATCTTCATCTCGACCGACTACGTATTCCCCGGCACGGCCGGCGATGCGCCCTAC
GAGGCCGATGCCACGCCGCGGCCGACCAACCTGTACGGGCAGACCAAGCTGGACGGCGAGCGGGCTGTGCTGGAC
GCGTACGAGCGGGTGGGCAGACAGGGTCTGGGCGTGGTGTTGCGCGTGCCTGTGCTCTACGGCCACGCGGAGACT
CCCGGCGAGAGCGCCGTCAACAGTCTGCTGGACTCGGTCTGGAAAGCACAGACGGAGGGGATGGAGATGACAATG
GACCACTGGGCGCGGCGGTACCCTACAAACACGGAAGACGTGGGACGCGTTTGTTGCGATGTGGCGGCCAAGTAT
CTCGACTCGCAACAGCAGCTGCCGAGGGTGCTGCAGTTTTCGAGCGAGGACAACATGACAAAGTACGACATCTGT
CAGCGCTTGGGCTCCATGATGGGCCTCTCGACGGCGAGCATCAAGGCAAACACGGCGGGAAATGAGGCCAATTCC
TCGGCGCAGCGGCCGTACGATTGCCACCTCAGCACGTCGGCCCTCCAGGGTCTGGGGATCGACGTGTCGACGTGC
GACTTTGACGCATGGTGGCGGCGCGAAGTAGGCGCCTTTCGAAAATGA
Gene >Ophun1|7206
ATGGCCCAACGATCCGTACTTGTCACCGGCGCAACGGGGCTCCTCGGCCGAGAAGTAGTCAACGCCTTTCGCCTC
GGCGGATGGAAGGTCAAGGGCACTGGCCACTCTCGCGCCGATGGTGTCGACGTCCTCCGCATCGACTTGACCAAG
GAAGACGAGGTTGCGCGAGCGCTGGACGAGATCAAGTCTGCCCCCCCCTGAGCGGTGAACAAGCTACCTAGGACG
ACTGACGAGTTTTCCCGGGGGTCAGACCGCAGGTCATCGTTCACTGTGAGTGATGAGAGTGATTGTCAAGGCGGC
AGATTATGACACGACGCCGTCTCCTAGGCGCAGCCGAAAAGGCGCCTGACAAGGTGGCCAAGGACCCCGAAGGCG
CGCGAGCGCTCAACGTGGCAGCCAGCGCAAGCCTCGCCATGCTAGCGGCTGACCGGGGCATCCTCGTCATCTTCA
TCTCGACCGACTACGTATTCCCCGGCACGGCCGGCGATGCGCCCTACGAGGCCGATGCCACGCCGCGGCCGACCA
ACCTGTACGGGCAGACCAAGCTGGACGGCGAGCGGGCTGTGCTGGACGCGTACGAGCGGGTGGGCAGACAGGGTC
TGGGCGTGGTGTTGCGCGTGCCTGTGCTCTACGGCCACGCGGAGACTCCCGGCGAGAGCGCCGTCAACAGTCTGC
TGGACTCGGTCTGGAAAGCACAGACGGAGGGGATGGAGATGACAATGGACCACTGGGCGCGGCGGTACCCTACAA
ACACGGAAGACGTGGGACGCGTTTGTTGCGGTATGTCTCAGGACCCCCTCCCCCCCCTGCCCGTTGACGCTCCCC
TCCCGCTGCCCCCTCGTTCGAATATAATATATTGTTCGCATATACGAGACTGACAACCCCTTCAGATGTGGCGGC
CAAGTATCTCGACTCGCAACAGCAGCTGCCGAGGGTGCTGCAGTTTTCGAGCGAGGACAACATGACAAAGTACGA
CATCTGTCAGCGCTTGGGCTCCATGATGGGCCTCTCGACGGCGAGCATCAAGGCAAACACGGCGGGAAATGAGGC
CAATTCCTCGGCGCAGCGGCCGTACGATTGCCACCTCAGCACGTCGGCCCTCCAGGGTCTGGGGATCGACGTGTC
GACGTGCGACTTTGACGCATGGTGGCGGCGCGAAGTAGGCGCCTTTCGAAAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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