© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|7118 |
| Gene name | |
| Location | Contig_854:2419..2954 |
| Strand | - |
| Gene length (bp) | 535 |
| Transcript length (bp) | 474 |
| Coding sequence length (bp) | 474 |
| Protein length (aa) | 158 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12273 | RCR | Chitin synthesis regulation, resistance to Congo red | 3.2E-19 | 22 | 155 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q03446|RCR2_YEAST | Protein RCR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCR2 PE=1 SV=1 | 19 | 78 | 5.0E-08 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|7118 MALDCSNGVCRRRRPWLNWGIWTFLGLLVVVFLVVFFFSACIARRRRRRGAQPMYGTGWMAPPNKYGGPEAGYHH HQQPPPPQGYGQGGFAPAPPAYGQPQAQYPQSTGTNFHPSDGYYGDGSQQQHGVQPPASAYQPQPQPHVGPYSPP PGPPPGK* |
| Coding | >Ophun1|7118 ATGGCGCTTGACTGCAGCAACGGGGTTTGTCGGAGACGCAGGCCGTGGCTTAACTGGGGGATCTGGACGTTTTTG GGACTTCTCGTTGTTGTTTTTCTCGTCGTCTTTTTCTTCTCTGCATGCATCGCCCGTCGTCGTCGTCGTCGCGGC GCGCAGCCCATGTACGGCACGGGATGGATGGCACCGCCCAATAAGTACGGAGGGCCCGAGGCGGGCTATCATCAT CATCAGCAGCCGCCGCCGCCGCAGGGCTACGGACAGGGTGGGTTCGCGCCCGCTCCGCCGGCATACGGACAACCG CAGGCGCAGTATCCCCAGTCGACGGGCACCAACTTTCACCCCAGCGACGGGTACTACGGCGACGGGTCGCAGCAG CAGCATGGGGTGCAGCCGCCGGCCTCGGCGTACCAGCCTCAGCCTCAGCCTCATGTCGGGCCGTATTCGCCGCCT CCGGGACCGCCGCCGGGCAAGTGA |
| Transcript | >Ophun1|7118 ATGGCGCTTGACTGCAGCAACGGGGTTTGTCGGAGACGCAGGCCGTGGCTTAACTGGGGGATCTGGACGTTTTTG GGACTTCTCGTTGTTGTTTTTCTCGTCGTCTTTTTCTTCTCTGCATGCATCGCCCGTCGTCGTCGTCGTCGCGGC GCGCAGCCCATGTACGGCACGGGATGGATGGCACCGCCCAATAAGTACGGAGGGCCCGAGGCGGGCTATCATCAT CATCAGCAGCCGCCGCCGCCGCAGGGCTACGGACAGGGTGGGTTCGCGCCCGCTCCGCCGGCATACGGACAACCG CAGGCGCAGTATCCCCAGTCGACGGGCACCAACTTTCACCCCAGCGACGGGTACTACGGCGACGGGTCGCAGCAG CAGCATGGGGTGCAGCCGCCGGCCTCGGCGTACCAGCCTCAGCCTCAGCCTCATGTCGGGCCGTATTCGCCGCCT CCGGGACCGCCGCCGGGCAAGTGA |
| Gene | >Ophun1|7118 ATGGCGCTTGACTGCAGCAACGGGGTTTGTCGGAGACGCAGGCCGTGGCTTAACTGGGGGATCTGGACGTTTTTG GGACTTCTCGTTGTTGTTTTTCTCGTCGTCTTTTTCTTCTCTGCGTGAGTGGACTGCCGTGTCTTATCTGTCGTT AAACGGCTTGAGCTGACGAGGGGTTATCAGATGCATCGCCCGTCGTCGTCGTCGTCGCGGCGCGCAGCCCATGTA CGGCACGGGATGGATGGCACCGCCCAATAAGTACGGAGGGCCCGAGGCGGGCTATCATCATCATCAGCAGCCGCC GCCGCCGCAGGGCTACGGACAGGGTGGGTTCGCGCCCGCTCCGCCGGCATACGGACAACCGCAGGCGCAGTATCC CCAGTCGACGGGCACCAACTTTCACCCCAGCGACGGGTACTACGGCGACGGGTCGCAGCAGCAGCATGGGGTGCA GCCGCCGGCCTCGGCGTACCAGCCTCAGCCTCAGCCTCATGTCGGGCCGTATTCGCCGCCTCCGGGACCGCCGCC GGGCAAGTGA |