© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|7065 |
| Gene name | |
| Location | Contig_839:5185..6275 |
| Strand | - |
| Gene length (bp) | 1090 |
| Transcript length (bp) | 987 |
| Coding sequence length (bp) | 987 |
| Protein length (aa) | 329 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14599 | zinc_ribbon_6 | Zinc-ribbon | 1.6E-25 | 126 | 182 |
| PF13639 | zf-RING_2 | Ring finger domain | 7.3E-08 | 78 | 121 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 1.5E-06 | 79 | 118 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 2.5E-05 | 79 | 120 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14099|YERG_SCHPO | Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=3 SV=1 | 1 | 182 | 3.0E-63 |
| sp|Q96PM5|ZN363_HUMAN | RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1 | 3 | 184 | 2.0E-44 |
| sp|Q9CR50|ZN363_MOUSE | RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1 | 3 | 184 | 4.0E-44 |
| sp|Q8VZK0|MIEL1_ARATH | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana GN=MIEL1 PE=1 SV=1 | 1 | 182 | 6.0E-44 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|7065 MLCMLCGTPQRASDVCIGCGETAAQYYCNICKLWENRQSKPIYHCNDCGICRRGLGLGKDFFHCKSSHKCIERST DCDCPICGEYMFTSPKPVVFMSCGHSIHKKCYDQHMKVSYKCPICNKSLANMETQFRNLDVAIQSQPMPPEFRGT QATVLCNDCSGRSTVAYHWLGLKCSICRSYNTVELQIHGEESEQLRAAVESREPPVPAESSQDTAMPSAIPVGSH TGGALLFNRRRRHSSHSREPVFRVTGGVAPSLSPLGVSVDNLCLSPMTNDAESEDDILGFWGRIRTGAADSEDEG ESDSDLDDAPDGDDDEDDEDEIILIGHR* |
| Coding | >Ophun1|7065 ATGCTCTGCATGCTCTGCGGCACTCCTCAGAGGGCGTCCGACGTCTGCATCGGCTGCGGAGAGACGGCCGCCCAG TACTACTGCAACATCTGCAAGCTGTGGGAGAACAGGCAGAGCAAGCCCATCTACCACTGCAACGACTGCGGCATC TGTCGCCGGGGGCTGGGCCTCGGCAAGGATTTCTTTCACTGCAAGAGCTCACACAAGTGCATCGAGCGGTCCACC GACTGCGACTGTCCCATCTGCGGCGAGTACATGTTCACCTCGCCAAAGCCCGTCGTCTTCATGAGCTGCGGCCAC AGCATCCACAAGAAATGCTACGACCAGCACATGAAGGTCTCGTACAAGTGTCCCATCTGCAATAAGAGCCTCGCC AACATGGAGACGCAATTCCGCAACCTCGACGTCGCCATCCAGAGCCAGCCCATGCCCCCCGAGTTCCGAGGCACC CAGGCCACTGTACTCTGCAACGACTGCTCTGGGAGGAGCACCGTCGCCTACCACTGGCTTGGCCTCAAGTGCTCC ATATGTCGCTCGTACAATACCGTCGAGCTCCAGATACACGGCGAAGAGAGCGAGCAACTACGGGCAGCCGTCGAG AGTCGGGAGCCTCCGGTGCCGGCCGAGTCCAGCCAGGACACGGCCATGCCATCGGCTATTCCGGTGGGCTCGCAT ACAGGTGGCGCCCTGCTGTTCAACCGTCGCAGGCGCCACTCATCCCACAGCCGAGAGCCCGTGTTCCGTGTGACG GGAGGTGTGGCGCCATCGCTGTCGCCTCTGGGCGTGAGCGTCGACAATCTGTGTCTGTCGCCCATGACCAACGAC GCCGAGTCGGAAGACGACATTCTCGGTTTTTGGGGCCGCATCCGCACAGGAGCAGCTGACTCGGAAGACGAGGGC GAGTCCGACTCGGATCTGGACGACGCGCCCGACGGCGATGATGACGAGGACGACGAAGACGAAATCATTTTAATT GGACATCGGTAA |
| Transcript | >Ophun1|7065 ATGCTCTGCATGCTCTGCGGCACTCCTCAGAGGGCGTCCGACGTCTGCATCGGCTGCGGAGAGACGGCCGCCCAG TACTACTGCAACATCTGCAAGCTGTGGGAGAACAGGCAGAGCAAGCCCATCTACCACTGCAACGACTGCGGCATC TGTCGCCGGGGGCTGGGCCTCGGCAAGGATTTCTTTCACTGCAAGAGCTCACACAAGTGCATCGAGCGGTCCACC GACTGCGACTGTCCCATCTGCGGCGAGTACATGTTCACCTCGCCAAAGCCCGTCGTCTTCATGAGCTGCGGCCAC AGCATCCACAAGAAATGCTACGACCAGCACATGAAGGTCTCGTACAAGTGTCCCATCTGCAATAAGAGCCTCGCC AACATGGAGACGCAATTCCGCAACCTCGACGTCGCCATCCAGAGCCAGCCCATGCCCCCCGAGTTCCGAGGCACC CAGGCCACTGTACTCTGCAACGACTGCTCTGGGAGGAGCACCGTCGCCTACCACTGGCTTGGCCTCAAGTGCTCC ATATGTCGCTCGTACAATACCGTCGAGCTCCAGATACACGGCGAAGAGAGCGAGCAACTACGGGCAGCCGTCGAG AGTCGGGAGCCTCCGGTGCCGGCCGAGTCCAGCCAGGACACGGCCATGCCATCGGCTATTCCGGTGGGCTCGCAT ACAGGTGGCGCCCTGCTGTTCAACCGTCGCAGGCGCCACTCATCCCACAGCCGAGAGCCCGTGTTCCGTGTGACG GGAGGTGTGGCGCCATCGCTGTCGCCTCTGGGCGTGAGCGTCGACAATCTGTGTCTGTCGCCCATGACCAACGAC GCCGAGTCGGAAGACGACATTCTCGGTTTTTGGGGCCGCATCCGCACAGGAGCAGCTGACTCGGAAGACGAGGGC GAGTCCGACTCGGATCTGGACGACGCGCCCGACGGCGATGATGACGAGGACGACGAAGACGAAATCATTTTAATT GGACATCGGTAA |
| Gene | >Ophun1|7065 ATGCTCTGCATGCTCTGCGGCACTCCTCAGAGGGCGTCCGACGTCTGCATCGGCTGCGGAGAGACGGCCGCCCAG TACTACTGCAACATCTGCAAGCTGTGGGAGAACAGGCAGAGCAAGCCCATCTACCACTGCAACGACTGCGGCATC TGTCGCCGGGGGCTGGGCCTCGGCAAGGATTTCTTTCACTGCAAGGTCCGTTCCCCTCTCAGCTTCGGCTCTCTA CCCAGTGCTGGCTGACCCCGTCACCCCCCCAAAAAAAAAGACGTGCCGCGCGTGCATCACGACGTCGATCCAGAG CTCACACAAGTGCATCGAGCGGTCCACCGACTGCGACTGTCCCATCTGCGGCGAGTACATGTTCACCTCGCCAAA GCCCGTCGTCTTCATGAGCTGCGGCCACAGCATCCACAAGAAATGCTACGACCAGCACATGAAGGTCTCGTACAA GTGTCCCATCTGCAATAAGAGCCTCGCCAACATGGAGACGCAATTCCGCAACCTCGACGTCGCCATCCAGAGCCA GCCCATGCCCCCCGAGTTCCGAGGCACCCAGGCCACTGTACTCTGCAACGACTGCTCTGGGAGGAGCACCGTCGC CTACCACTGGCTTGGCCTCAAGTGCTCCATATGTCGCTCGTACAATACCGTCGAGCTCCAGATACACGGCGAAGA GAGCGAGCAACTACGGGCAGCCGTCGAGAGTCGGGAGCCTCCGGTGCCGGCCGAGTCCAGCCAGGACACGGCCAT GCCATCGGCTATTCCGGTGGGCTCGCATACAGGTGGCGCCCTGCTGTTCAACCGTCGCAGGCGCCACTCATCCCA CAGCCGAGAGCCCGTGTTCCGTGTGACGGGAGGTGTGGCGCCATCGCTGTCGCCTCTGGGCGTGAGCGTCGACAA TCTGTGTCTGTCGCCCATGACCAACGACGCCGAGTCGGAAGACGACATTCTCGGTTTTTGGGGCCGCATCCGCAC AGGAGCAGCTGACTCGGAAGACGAGGGCGAGTCCGACTCGGATCTGGACGACGCGCCCGACGGCGATGATGACGA GGACGACGAAGACGAAATCATTTTAATTGGACATCGGTAA |