Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|7065
Gene name
LocationContig_839:5185..6275
Strand-
Gene length (bp)1090
Transcript length (bp)987
Coding sequence length (bp)987
Protein length (aa) 329

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14599 zinc_ribbon_6 Zinc-ribbon 1.6E-25 126 182
PF13639 zf-RING_2 Ring finger domain 7.3E-08 78 121
PF13445 zf-RING_UBOX RING-type zinc-finger 1.5E-06 79 118
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2.5E-05 79 120

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=3 SV=1 1 182 3.0E-63
sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1 3 184 2.0E-44
sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1 3 184 4.0E-44
sp|Q8VZK0|MIEL1_ARATH E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana GN=MIEL1 PE=1 SV=1 1 182 6.0E-44

GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0003674 molecular_function No
GO:0043169 cation binding No
GO:0043167 ion binding No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 15 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|7065
MLCMLCGTPQRASDVCIGCGETAAQYYCNICKLWENRQSKPIYHCNDCGICRRGLGLGKDFFHCKSSHKCIERST
DCDCPICGEYMFTSPKPVVFMSCGHSIHKKCYDQHMKVSYKCPICNKSLANMETQFRNLDVAIQSQPMPPEFRGT
QATVLCNDCSGRSTVAYHWLGLKCSICRSYNTVELQIHGEESEQLRAAVESREPPVPAESSQDTAMPSAIPVGSH
TGGALLFNRRRRHSSHSREPVFRVTGGVAPSLSPLGVSVDNLCLSPMTNDAESEDDILGFWGRIRTGAADSEDEG
ESDSDLDDAPDGDDDEDDEDEIILIGHR*
Coding >Ophun1|7065
ATGCTCTGCATGCTCTGCGGCACTCCTCAGAGGGCGTCCGACGTCTGCATCGGCTGCGGAGAGACGGCCGCCCAG
TACTACTGCAACATCTGCAAGCTGTGGGAGAACAGGCAGAGCAAGCCCATCTACCACTGCAACGACTGCGGCATC
TGTCGCCGGGGGCTGGGCCTCGGCAAGGATTTCTTTCACTGCAAGAGCTCACACAAGTGCATCGAGCGGTCCACC
GACTGCGACTGTCCCATCTGCGGCGAGTACATGTTCACCTCGCCAAAGCCCGTCGTCTTCATGAGCTGCGGCCAC
AGCATCCACAAGAAATGCTACGACCAGCACATGAAGGTCTCGTACAAGTGTCCCATCTGCAATAAGAGCCTCGCC
AACATGGAGACGCAATTCCGCAACCTCGACGTCGCCATCCAGAGCCAGCCCATGCCCCCCGAGTTCCGAGGCACC
CAGGCCACTGTACTCTGCAACGACTGCTCTGGGAGGAGCACCGTCGCCTACCACTGGCTTGGCCTCAAGTGCTCC
ATATGTCGCTCGTACAATACCGTCGAGCTCCAGATACACGGCGAAGAGAGCGAGCAACTACGGGCAGCCGTCGAG
AGTCGGGAGCCTCCGGTGCCGGCCGAGTCCAGCCAGGACACGGCCATGCCATCGGCTATTCCGGTGGGCTCGCAT
ACAGGTGGCGCCCTGCTGTTCAACCGTCGCAGGCGCCACTCATCCCACAGCCGAGAGCCCGTGTTCCGTGTGACG
GGAGGTGTGGCGCCATCGCTGTCGCCTCTGGGCGTGAGCGTCGACAATCTGTGTCTGTCGCCCATGACCAACGAC
GCCGAGTCGGAAGACGACATTCTCGGTTTTTGGGGCCGCATCCGCACAGGAGCAGCTGACTCGGAAGACGAGGGC
GAGTCCGACTCGGATCTGGACGACGCGCCCGACGGCGATGATGACGAGGACGACGAAGACGAAATCATTTTAATT
GGACATCGGTAA
Transcript >Ophun1|7065
ATGCTCTGCATGCTCTGCGGCACTCCTCAGAGGGCGTCCGACGTCTGCATCGGCTGCGGAGAGACGGCCGCCCAG
TACTACTGCAACATCTGCAAGCTGTGGGAGAACAGGCAGAGCAAGCCCATCTACCACTGCAACGACTGCGGCATC
TGTCGCCGGGGGCTGGGCCTCGGCAAGGATTTCTTTCACTGCAAGAGCTCACACAAGTGCATCGAGCGGTCCACC
GACTGCGACTGTCCCATCTGCGGCGAGTACATGTTCACCTCGCCAAAGCCCGTCGTCTTCATGAGCTGCGGCCAC
AGCATCCACAAGAAATGCTACGACCAGCACATGAAGGTCTCGTACAAGTGTCCCATCTGCAATAAGAGCCTCGCC
AACATGGAGACGCAATTCCGCAACCTCGACGTCGCCATCCAGAGCCAGCCCATGCCCCCCGAGTTCCGAGGCACC
CAGGCCACTGTACTCTGCAACGACTGCTCTGGGAGGAGCACCGTCGCCTACCACTGGCTTGGCCTCAAGTGCTCC
ATATGTCGCTCGTACAATACCGTCGAGCTCCAGATACACGGCGAAGAGAGCGAGCAACTACGGGCAGCCGTCGAG
AGTCGGGAGCCTCCGGTGCCGGCCGAGTCCAGCCAGGACACGGCCATGCCATCGGCTATTCCGGTGGGCTCGCAT
ACAGGTGGCGCCCTGCTGTTCAACCGTCGCAGGCGCCACTCATCCCACAGCCGAGAGCCCGTGTTCCGTGTGACG
GGAGGTGTGGCGCCATCGCTGTCGCCTCTGGGCGTGAGCGTCGACAATCTGTGTCTGTCGCCCATGACCAACGAC
GCCGAGTCGGAAGACGACATTCTCGGTTTTTGGGGCCGCATCCGCACAGGAGCAGCTGACTCGGAAGACGAGGGC
GAGTCCGACTCGGATCTGGACGACGCGCCCGACGGCGATGATGACGAGGACGACGAAGACGAAATCATTTTAATT
GGACATCGGTAA
Gene >Ophun1|7065
ATGCTCTGCATGCTCTGCGGCACTCCTCAGAGGGCGTCCGACGTCTGCATCGGCTGCGGAGAGACGGCCGCCCAG
TACTACTGCAACATCTGCAAGCTGTGGGAGAACAGGCAGAGCAAGCCCATCTACCACTGCAACGACTGCGGCATC
TGTCGCCGGGGGCTGGGCCTCGGCAAGGATTTCTTTCACTGCAAGGTCCGTTCCCCTCTCAGCTTCGGCTCTCTA
CCCAGTGCTGGCTGACCCCGTCACCCCCCCAAAAAAAAAGACGTGCCGCGCGTGCATCACGACGTCGATCCAGAG
CTCACACAAGTGCATCGAGCGGTCCACCGACTGCGACTGTCCCATCTGCGGCGAGTACATGTTCACCTCGCCAAA
GCCCGTCGTCTTCATGAGCTGCGGCCACAGCATCCACAAGAAATGCTACGACCAGCACATGAAGGTCTCGTACAA
GTGTCCCATCTGCAATAAGAGCCTCGCCAACATGGAGACGCAATTCCGCAACCTCGACGTCGCCATCCAGAGCCA
GCCCATGCCCCCCGAGTTCCGAGGCACCCAGGCCACTGTACTCTGCAACGACTGCTCTGGGAGGAGCACCGTCGC
CTACCACTGGCTTGGCCTCAAGTGCTCCATATGTCGCTCGTACAATACCGTCGAGCTCCAGATACACGGCGAAGA
GAGCGAGCAACTACGGGCAGCCGTCGAGAGTCGGGAGCCTCCGGTGCCGGCCGAGTCCAGCCAGGACACGGCCAT
GCCATCGGCTATTCCGGTGGGCTCGCATACAGGTGGCGCCCTGCTGTTCAACCGTCGCAGGCGCCACTCATCCCA
CAGCCGAGAGCCCGTGTTCCGTGTGACGGGAGGTGTGGCGCCATCGCTGTCGCCTCTGGGCGTGAGCGTCGACAA
TCTGTGTCTGTCGCCCATGACCAACGACGCCGAGTCGGAAGACGACATTCTCGGTTTTTGGGGCCGCATCCGCAC
AGGAGCAGCTGACTCGGAAGACGAGGGCGAGTCCGACTCGGATCTGGACGACGCGCCCGACGGCGATGATGACGA
GGACGACGAAGACGAAATCATTTTAATTGGACATCGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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