© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|6956 |
| Gene name | |
| Location | Contig_810:2522..3079 |
| Strand | + |
| Gene length (bp) | 557 |
| Transcript length (bp) | 474 |
| Coding sequence length (bp) | 474 |
| Protein length (aa) | 158 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02269 | TFIID-18kDa | Transcription initiation factor IID, 18kD subunit | 1.3E-17 | 19 | 102 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P11747|TAF13_YEAST | Transcription initiation factor TFIID subunit 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF13 PE=1 SV=2 | 8 | 102 | 8.0E-16 |
| sp|O60076|TAF13_SCHPO | Transcription initiation factor TFIID subunit 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf13 PE=3 SV=3 | 20 | 111 | 6.0E-15 |
| sp|Q54CN8|TAF13_DICDI | Transcription initiation factor TFIID subunit 13 OS=Dictyostelium discoideum GN=taf13 PE=3 SV=1 | 20 | 102 | 1.0E-08 |
| sp|Q6NQH4|TAF13_ARATH | Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana GN=TAF13 PE=1 SV=1 | 20 | 113 | 2.0E-07 |
| sp|Q5R9W6|TAF13_PONAB | Transcription initiation factor TFIID subunit 13 OS=Pongo abelii GN=TAF13 PE=2 SV=1 | 20 | 102 | 6.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P11747|TAF13_YEAST | Transcription initiation factor TFIID subunit 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF13 PE=1 SV=2 | 8 | 102 | 8.0E-16 |
| sp|O60076|TAF13_SCHPO | Transcription initiation factor TFIID subunit 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf13 PE=3 SV=3 | 20 | 111 | 6.0E-15 |
| sp|Q54CN8|TAF13_DICDI | Transcription initiation factor TFIID subunit 13 OS=Dictyostelium discoideum GN=taf13 PE=3 SV=1 | 20 | 102 | 1.0E-08 |
| sp|Q6NQH4|TAF13_ARATH | Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana GN=TAF13 PE=1 SV=1 | 20 | 113 | 2.0E-07 |
| sp|Q5R9W6|TAF13_PONAB | Transcription initiation factor TFIID subunit 13 OS=Pongo abelii GN=TAF13 PE=2 SV=1 | 20 | 102 | 6.0E-07 |
| sp|P61216|TAF13_MOUSE | Transcription initiation factor TFIID subunit 13 OS=Mus musculus GN=Taf13 PE=2 SV=1 | 20 | 102 | 6.0E-07 |
| sp|Q15543|TAF13_HUMAN | Transcription initiation factor TFIID subunit 13 OS=Homo sapiens GN=TAF13 PE=1 SV=1 | 20 | 102 | 6.0E-07 |
| sp|Q148M7|TAF13_BOVIN | Transcription initiation factor TFIID subunit 13 OS=Bos taurus GN=TAF13 PE=2 SV=1 | 20 | 102 | 6.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006366 | transcription by RNA polymerase II | Yes |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0097659 | nucleic acid-templated transcription | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0006351 | transcription, DNA-templated | No |
| GO:0016070 | RNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|6956 MEPRARAGKNVGKMNFSHNELAQLLYAHGDVKIPLPETVRVLDEILTDFMQSIAFEATRAAHYSGRQKIKYEDFE FAFRKNPAFLGKVQEVFEKQREIKKARDIIRDGEDEIIKGAADEEKKRAKAEDRALPARADEELGEADDDVNAEA DAMGKKR* |
| Coding | >Ophun1|6956 ATGGAGCCCCGAGCGCGGGCCGGCAAAAATGTCGGCAAGATGAACTTCTCTCACAATGAACTGGCGCAGCTTCTT TACGCGCACGGCGACGTCAAGATTCCTCTGCCCGAGACGGTCCGCGTCCTGGACGAGATCCTCACCGACTTCATG CAGTCCATCGCCTTCGAGGCCACCCGTGCCGCTCACTACTCGGGACGTCAGAAGATTAAGTACGAGGACTTTGAG TTCGCCTTTCGCAAAAACCCGGCCTTCCTGGGCAAGGTGCAGGAAGTCTTTGAGAAGCAGCGAGAAATTAAGAAG GCTCGCGATATCATACGCGATGGAGAGGATGAGATCATCAAGGGTGCAGCCGACGAGGAGAAGAAGCGCGCAAAG GCCGAAGATAGAGCCCTGCCCGCTCGTGCGGATGAGGAGCTAGGCGAGGCCGACGACGATGTCAATGCCGAAGCC GATGCAATGGGTAAGAAGCGCTGA |
| Transcript | >Ophun1|6956 ATGGAGCCCCGAGCGCGGGCCGGCAAAAATGTCGGCAAGATGAACTTCTCTCACAATGAACTGGCGCAGCTTCTT TACGCGCACGGCGACGTCAAGATTCCTCTGCCCGAGACGGTCCGCGTCCTGGACGAGATCCTCACCGACTTCATG CAGTCCATCGCCTTCGAGGCCACCCGTGCCGCTCACTACTCGGGACGTCAGAAGATTAAGTACGAGGACTTTGAG TTCGCCTTTCGCAAAAACCCGGCCTTCCTGGGCAAGGTGCAGGAAGTCTTTGAGAAGCAGCGAGAAATTAAGAAG GCTCGCGATATCATACGCGATGGAGAGGATGAGATCATCAAGGGTGCAGCCGACGAGGAGAAGAAGCGCGCAAAG GCCGAAGATAGAGCCCTGCCCGCTCGTGCGGATGAGGAGCTAGGCGAGGCCGACGACGATGTCAATGCCGAAGCC GATGCAATGGGTAAGAAGCGCTGA |
| Gene | >Ophun1|6956 ATGGAGCCCCGAGCGCGGGCCGGCAAAAATGTCGGCAAGATGAACTTCTCTCACAATGAACGTGCGTCGTCATCG ATTCGCACTCCCAAATACCCTTTGGATTATCGCGTCAGACTCTGACACGTCTCTTTCCACCTCTTCTAGTGGCGC AGCTTCTTTACGCGCACGGCGACGTCAAGATTCCTCTGCCCGAGACGGTCCGCGTCCTGGACGAGATCCTCACCG ACTTCATGCAGTCCATCGCCTTCGAGGCCACCCGTGCCGCTCACTACTCGGGACGTCAGAAGATTAAGTACGAGG ACTTTGAGTTCGCCTTTCGCAAAAACCCGGCCTTCCTGGGCAAGGTGCAGGAAGTCTTTGAGAAGCAGCGAGAAA TTAAGAAGGCTCGCGATATCATACGCGATGGAGAGGATGAGATCATCAAGGGTGCAGCCGACGAGGAGAAGAAGC GCGCAAAGGCCGAAGATAGAGCCCTGCCCGCTCGTGCGGATGAGGAGCTAGGCGAGGCCGACGACGATGTCAATG CCGAAGCCGATGCAATGGGTAAGAAGCGCTGA |