© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|686 |
| Gene name | |
| Location | Contig_122:83..791 |
| Strand | + |
| Gene length (bp) | 708 |
| Transcript length (bp) | 708 |
| Coding sequence length (bp) | 708 |
| Protein length (aa) | 236 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01988 | VIT1 | VIT family | 3.0E-53 | 9 | 213 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6ERE5|VIT12_ORYSJ | Vacuolar iron transporter 1.2 OS=Oryza sativa subsp. japonica GN=VIT1.2 PE=3 SV=2 | 5 | 217 | 6.0E-30 |
| sp|Q6MWE5|VIT11_ORYSJ | Vacuolar iron transporter 1.1 OS=Oryza sativa subsp. japonica GN=VIT1.1 PE=2 SV=1 | 5 | 216 | 2.0E-29 |
| sp|Q9ZUA5|VIT1_ARATH | Vacuolar iron transporter 1 OS=Arabidopsis thaliana GN=VIT1 PE=2 SV=1 | 10 | 213 | 7.0E-29 |
| sp|P47818|CCC1_YEAST | Protein CCC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCC1 PE=1 SV=1 | 7 | 184 | 3.0E-28 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030026 | cellular manganese ion homeostasis | Yes |
| GO:0005384 | manganese ion transmembrane transporter activity | Yes |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0065008 | regulation of biological quality | No |
| GO:0009987 | cellular process | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0050801 | ion homeostasis | No |
| GO:0055076 | transition metal ion homeostasis | No |
| GO:0055082 | cellular chemical homeostasis | No |
| GO:0055065 | metal ion homeostasis | No |
| GO:0098771 | inorganic ion homeostasis | No |
| GO:0006873 | cellular ion homeostasis | No |
| GO:0048878 | chemical homeostasis | No |
| GO:0019725 | cellular homeostasis | No |
| GO:0042592 | homeostatic process | No |
| GO:0055071 | manganese ion homeostasis | No |
| GO:0003674 | molecular_function | No |
| GO:0006875 | cellular metal ion homeostasis | No |
| GO:0030003 | cellular cation homeostasis | No |
| GO:0008150 | biological_process | No |
| GO:0055080 | cation homeostasis | No |
| GO:0046916 | cellular transition metal ion homeostasis | No |
| GO:0046915 | transition metal ion transmembrane transporter activity | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0065007 | biological regulation | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 39 | 61 | 22 |
| 3 | 133 | 155 | 22 |
| 4 | 160 | 178 | 18 |
| 5 | 190 | 212 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|686 MDLADTLHHVIIGFSDGLTVPFALTAGLSSLGSTRLVVIGGLAELFSGMISMGLGAYLAAVTERGRSRQERQLAS QDDLYALLRDRYAISPSVARALVNDLGQDHDVRCQRLRDDLIHQQDHDPSRIRPCLAGFTMGASYFVGGLIPMIP YFFVARVRDALLISVIVTVAVLLVFGYVKDYLAVRNHRAGCWGAFLTLVIGVVAAGTSYAIVRALDAAGDSLSIF DSSRLVLSVK* |
| Coding | >Ophun1|686 ATGGACCTCGCCGACACGCTCCACCACGTCATCATCGGCTTCTCAGACGGCCTGACCGTTCCCTTTGCCCTCACC GCCGGCCTCTCCTCCCTCGGCAGCACCCGCCTCGTCGTCATCGGCGGTCTGGCCGAGCTCTTCTCCGGCATGATC AGCATGGGGCTGGGCGCCTACCTGGCCGCCGTGACGGAGCGAGGCCGTTCGAGACAGGAGCGTCAGCTGGCCAGT CAGGACGATCTATACGCGCTGCTGCGCGATCGCTATGCCATCTCTCCCTCCGTGGCGAGGGCTTTGGTCAATGAC CTCGGTCAGGACCACGACGTCCGCTGCCAGCGTCTCCGCGATGATCTCATTCACCAACAGGACCACGATCCTTCT CGCATCCGTCCGTGTCTCGCTGGCTTCACCATGGGCGCCAGCTACTTCGTCGGAGGCCTCATCCCCATGATCCCC TACTTCTTCGTCGCCCGCGTCCGCGACGCTCTTCTCATCTCCGTCATCGTCACCGTCGCCGTCCTCCTCGTCTTT GGCTACGTCAAGGATTATCTGGCCGTTCGCAATCACCGCGCCGGCTGCTGGGGTGCCTTCCTGACCCTCGTTATA GGCGTCGTCGCCGCCGGCACGAGCTACGCCATTGTCCGAGCCTTGGATGCCGCTGGCGATTCTCTGTCCATCTTC GATTCTTCCAGACTTGTCTTATCTGTCAAGTGA |
| Transcript | >Ophun1|686 ATGGACCTCGCCGACACGCTCCACCACGTCATCATCGGCTTCTCAGACGGCCTGACCGTTCCCTTTGCCCTCACC GCCGGCCTCTCCTCCCTCGGCAGCACCCGCCTCGTCGTCATCGGCGGTCTGGCCGAGCTCTTCTCCGGCATGATC AGCATGGGGCTGGGCGCCTACCTGGCCGCCGTGACGGAGCGAGGCCGTTCGAGACAGGAGCGTCAGCTGGCCAGT CAGGACGATCTATACGCGCTGCTGCGCGATCGCTATGCCATCTCTCCCTCCGTGGCGAGGGCTTTGGTCAATGAC CTCGGTCAGGACCACGACGTCCGCTGCCAGCGTCTCCGCGATGATCTCATTCACCAACAGGACCACGATCCTTCT CGCATCCGTCCGTGTCTCGCTGGCTTCACCATGGGCGCCAGCTACTTCGTCGGAGGCCTCATCCCCATGATCCCC TACTTCTTCGTCGCCCGCGTCCGCGACGCTCTTCTCATCTCCGTCATCGTCACCGTCGCCGTCCTCCTCGTCTTT GGCTACGTCAAGGATTATCTGGCCGTTCGCAATCACCGCGCCGGCTGCTGGGGTGCCTTCCTGACCCTCGTTATA GGCGTCGTCGCCGCCGGCACGAGCTACGCCATTGTCCGAGCCTTGGATGCCGCTGGCGATTCTCTGTCCATCTTC GATTCTTCCAGACTTGTCTTATCTGTCAAGTGA |
| Gene | >Ophun1|686 ATGGACCTCGCCGACACGCTCCACCACGTCATCATCGGCTTCTCAGACGGCCTGACCGTTCCCTTTGCCCTCACC GCCGGCCTCTCCTCCCTCGGCAGCACCCGCCTCGTCGTCATCGGCGGTCTGGCCGAGCTCTTCTCCGGCATGATC AGCATGGGGCTGGGCGCCTACCTGGCCGCCGTGACGGAGCGAGGCCGTTCGAGACAGGAGCGTCAGCTGGCCAGT CAGGACGATCTATACGCGCTGCTGCGCGATCGCTATGCCATCTCTCCCTCCGTGGCGAGGGCTTTGGTCAATGAC CTCGGTCAGGACCACGACGTCCGCTGCCAGCGTCTCCGCGATGATCTCATTCACCAACAGGACCACGATCCTTCT CGCATCCGTCCGTGTCTCGCTGGCTTCACCATGGGCGCCAGCTACTTCGTCGGAGGCCTCATCCCCATGATCCCC TACTTCTTCGTCGCCCGCGTCCGCGACGCTCTTCTCATCTCCGTCATCGTCACCGTCGCCGTCCTCCTCGTCTTT GGCTACGTCAAGGATTATCTGGCCGTTCGCAATCACCGCGCCGGCTGCTGGGGTGCCTTCCTGACCCTCGTTATA GGCGTCGTCGCCGCCGGCACGAGCTACGCCATTGTCCGAGCCTTGGATGCCGCTGGCGATTCTCTGTCCATCTTC GATTCTTCCAGACTTGTCTTATCTGTCAAGTGA |