Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|6821
Gene name
LocationContig_781:629..2188
Strand+
Gene length (bp)1559
Transcript length (bp)1401
Coding sequence length (bp)1401
Protein length (aa) 467

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02582 DUF155 RMND1/Sif2-Sif3/Mrx10, DUF155 1.3E-51 242 412

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 37 465 6.0E-132
sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 64 460 1.0E-129
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 240 459 4.0E-43
sp|Q09877|SIF3_SCHPO Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 65 426 1.0E-40
sp|Q8CI78|RMND1_MOUSE Required for meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Rmnd1 PE=1 SV=1 242 451 7.0E-24
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Swissprot ID Swissprot Description Start End E-value
sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 37 465 6.0E-132
sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 64 460 1.0E-129
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 240 459 4.0E-43
sp|Q09877|SIF3_SCHPO Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 65 426 1.0E-40
sp|Q8CI78|RMND1_MOUSE Required for meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Rmnd1 PE=1 SV=1 242 451 7.0E-24
sp|Q9NWS8|RMND1_HUMAN Required for meiotic nuclear division protein 1 homolog OS=Homo sapiens GN=RMND1 PE=1 SV=2 242 451 3.0E-23
sp|Q5RAR5|RMND1_PONAB Required for meiotic nuclear division protein 1 homolog OS=Pongo abelii GN=RMND1 PE=2 SV=1 242 451 4.0E-22
sp|Q05648|MRX10_YEAST MIOREX complex component 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRX10 PE=1 SV=1 247 450 4.0E-19
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 26 0.45

Transmembrane Domains

Domain # Start End Length
1 437 459 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|6821
MERAASDENTPLLPASDGRPRNARTVTFSADPVTRTIEPDALPTSLNNKLRRRYSHGSAVPSSVAAKIGPQRSTK
KTEKLKLLPNPDLQEDEDEESGRDVYSQYTRIKDPTARRDAARLGKSDRARLPRVTAYCTANRYDMDGLMRFLKG
RGKTRGANPKLIDECIYTPYAYAKPSSPRSPRQRRHSTGGDLYEADALRQSSPPPPPPEAHVYHEVVAEDRLPTV
IEPAPELDVQVHTPEAFLFDYGVIVVWGMTEAHEARFLRDIAKFELEKLAVDDVETEHFNFYYTHEYQARIYNDF
ITLRDKHNYMTKLAISHALAQSVKTSLFEELIASTVDTCKDIPTQIALTGKIKLSRKQINMQIGELFILRINIHL
NGSVLDTPELFWVEPQLEPVYQAVRSYLEMDQRVELLTERLDVIADLLAVLKDQLSHGHDEMLEWIVIILIAMEI
LVAAINIVVDVYAGEA*
Coding >Ophun1|6821
ATGGAGCGCGCGGCCTCGGACGAGAACACGCCCCTACTGCCGGCCTCGGATGGCCGGCCCCGAAACGCGCGGACC
GTCACCTTCAGCGCCGATCCCGTGACGCGCACCATCGAGCCAGACGCCTTGCCTACGTCGCTCAACAACAAGCTT
CGTCGTCGCTACAGCCATGGCAGCGCTGTCCCTTCCTCCGTCGCCGCAAAGATTGGGCCCCAGCGGAGCACAAAG
AAGACGGAGAAGCTCAAGTTGTTGCCCAACCCGGATCTTCAGGAGGATGAGGATGAGGAGAGCGGTCGAGATGTC
TACTCGCAGTATACCCGTATCAAGGATCCTACCGCCAGGAGAGACGCTGCTCGCCTCGGAAAGAGTGATCGTGCT
CGTCTGCCGCGCGTCACGGCTTATTGCACTGCGAACCGTTACGACATGGATGGCCTCATGCGCTTCCTCAAGGGT
CGCGGTAAGACGAGGGGCGCCAACCCCAAGCTCATCGACGAGTGCATCTACACTCCCTACGCCTACGCGAAGCCC
TCCAGTCCCCGCTCGCCCCGTCAACGGCGCCACTCGACGGGCGGCGACTTGTACGAAGCCGATGCTCTTCGTCAG
TCTTCACCGCCGCCGCCGCCGCCAGAAGCCCATGTCTATCACGAAGTCGTTGCCGAGGACCGTCTGCCCACCGTC
ATCGAGCCGGCGCCTGAACTAGACGTTCAGGTTCATACGCCCGAGGCCTTTCTCTTCGACTACGGCGTCATCGTC
GTCTGGGGCATGACTGAGGCTCACGAGGCTCGCTTCCTGAGGGATATTGCCAAGTTTGAGTTGGAGAAGCTGGCG
GTGGATGATGTCGAGACGGAGCATTTCAACTTTTACTACACGCACGAGTATCAGGCTCGCATCTACAACGACTTC
ATCACCCTGCGAGATAAGCACAACTACATGACCAAGCTGGCCATATCGCACGCCCTCGCCCAGAGCGTAAAGACA
TCCCTCTTTGAGGAGCTCATCGCGTCTACGGTAGATACCTGCAAGGATATACCGACGCAGATCGCCCTCACCGGA
AAGATCAAACTCAGCAGGAAGCAAATCAACATGCAGATCGGCGAGCTCTTCATCCTCCGCATCAACATCCACCTC
AACGGCTCTGTCCTCGACACGCCGGAGCTTTTCTGGGTCGAGCCCCAGCTTGAACCCGTTTACCAGGCCGTCCGC
AGCTACCTCGAGATGGATCAGCGCGTCGAGCTGTTGACGGAGCGGCTCGATGTCATTGCCGACTTGCTGGCTGTG
CTGAAGGATCAGCTCAGCCACGGCCATGATGAGATGCTCGAGTGGATTGTCATCATCCTCATCGCCATGGAGATT
CTCGTGGCCGCCATCAACATCGTCGTCGACGTTTACGCAGGCGAGGCATAG
Transcript >Ophun1|6821
ATGGAGCGCGCGGCCTCGGACGAGAACACGCCCCTACTGCCGGCCTCGGATGGCCGGCCCCGAAACGCGCGGACC
GTCACCTTCAGCGCCGATCCCGTGACGCGCACCATCGAGCCAGACGCCTTGCCTACGTCGCTCAACAACAAGCTT
CGTCGTCGCTACAGCCATGGCAGCGCTGTCCCTTCCTCCGTCGCCGCAAAGATTGGGCCCCAGCGGAGCACAAAG
AAGACGGAGAAGCTCAAGTTGTTGCCCAACCCGGATCTTCAGGAGGATGAGGATGAGGAGAGCGGTCGAGATGTC
TACTCGCAGTATACCCGTATCAAGGATCCTACCGCCAGGAGAGACGCTGCTCGCCTCGGAAAGAGTGATCGTGCT
CGTCTGCCGCGCGTCACGGCTTATTGCACTGCGAACCGTTACGACATGGATGGCCTCATGCGCTTCCTCAAGGGT
CGCGGTAAGACGAGGGGCGCCAACCCCAAGCTCATCGACGAGTGCATCTACACTCCCTACGCCTACGCGAAGCCC
TCCAGTCCCCGCTCGCCCCGTCAACGGCGCCACTCGACGGGCGGCGACTTGTACGAAGCCGATGCTCTTCGTCAG
TCTTCACCGCCGCCGCCGCCGCCAGAAGCCCATGTCTATCACGAAGTCGTTGCCGAGGACCGTCTGCCCACCGTC
ATCGAGCCGGCGCCTGAACTAGACGTTCAGGTTCATACGCCCGAGGCCTTTCTCTTCGACTACGGCGTCATCGTC
GTCTGGGGCATGACTGAGGCTCACGAGGCTCGCTTCCTGAGGGATATTGCCAAGTTTGAGTTGGAGAAGCTGGCG
GTGGATGATGTCGAGACGGAGCATTTCAACTTTTACTACACGCACGAGTATCAGGCTCGCATCTACAACGACTTC
ATCACCCTGCGAGATAAGCACAACTACATGACCAAGCTGGCCATATCGCACGCCCTCGCCCAGAGCGTAAAGACA
TCCCTCTTTGAGGAGCTCATCGCGTCTACGGTAGATACCTGCAAGGATATACCGACGCAGATCGCCCTCACCGGA
AAGATCAAACTCAGCAGGAAGCAAATCAACATGCAGATCGGCGAGCTCTTCATCCTCCGCATCAACATCCACCTC
AACGGCTCTGTCCTCGACACGCCGGAGCTTTTCTGGGTCGAGCCCCAGCTTGAACCCGTTTACCAGGCCGTCCGC
AGCTACCTCGAGATGGATCAGCGCGTCGAGCTGTTGACGGAGCGGCTCGATGTCATTGCCGACTTGCTGGCTGTG
CTGAAGGATCAGCTCAGCCACGGCCATGATGAGATGCTCGAGTGGATTGTCATCATCCTCATCGCCATGGAGATT
CTCGTGGCCGCCATCAACATCGTCGTCGACGTTTACGCAGGCGAGGCATAG
Gene >Ophun1|6821
ATGGAGCGCGCGGCCTCGGACGAGAACACGCCCCTACTGCCGGCCTCGGATGGCCGGCCCCGAAACGCGCGGACC
GTCACCTTCAGCGCCGATCCCGTGACGCGCACCATCGAGCCAGACGCCTTGCCTACGTCGCTCAACAACAAGCTT
CGTCGTCGCTACAGCCATGGCAGCGCTGTCCCTTCCTCCGTCGCCGCAAAGATTGGGCCCCAGCGGAGCACAAAG
AAGACGGAGAAGCTCAAGTTGTTGCCCAACCCGGATCTTCAGGAGGATGAGGATGAGGAGAGCGGTCGAGATGTC
TACTCGCAGTATACCCGTATCAAGGATCCTACCGCCAGGAGAGACGCTGCTCGCCTCGGAAAGAGTGATCGTGCT
CGTCTGCCGCGCGTCACGGCTTATTGCACTGCGAACCGTTACGACATGGATGGCCTCATGCGCTTCCTCAAGGGT
CGCGGTAAGACGAGGGGCGCCAACCCCAAGCTCATCGACGAGTGCATCTACACTCCCTACGCCTACGCGAAGCCC
TCCAGTCCCCGCTCGCCCCGTCAACGGCGCCACTCGACGGGCGGCGACTTGTACGAAGCCGATGCTCTTCGTCAG
TCTTCACCGCCGCCGCCGCCGCCAGAAGCCCATGTCTATCACGAAGTCGTTGCCGAGGACCGTCTGCCCACCGTC
ATCGAGCCGGCGCCTGAACTAGACGTTCAGGTTCATACGCCCGAGGCCTTTCTCTTCGACTACGGCGTCATCGTC
GTCTGGGGCATGACTGAGGCTCACGAGGCTCGCTTCCTGAGGGATATTGCCAAGTTTGAGTTGGAGAAGCTGGCG
GTGGATGATGTCGAGACGGAGCATTTCAACTTTTACTACACGCACGAGTATCAGGCTCGCATCTACAACGACTTC
ATCACCCTGCGAGATAAGCACAACTACATGACCAAGCTGGCCATATCGCACGCCCTCGCCCAGAGCGTAAAGGTG
ATGACGGCTCCGTCCCTCTGGACTATTCCTCCTAGCTAACAACAAGGGAAATCGTCCCCGAAAAATCAGACATCC
CTCTTTGAGGAGCTCATCGCGTCTACGGTAGATACCTGCAAGGATATACCGACGCAGATCGCCCTCACCGGAAAG
ATCAAACTCAGCAGGAAGCAAATCAACATGCAGATCGGCGAGCTCTTCATCCTCCGCATCAACATCCACCTCAAC
GGCTCTGTCCTCGACACGCCGGAGCTTTTCTGGGTCGAGCCCCAGCTTGAACCCGTTTACCAGGCCGTCCGCAGC
TACCTCGAGATGGATCAGCGCGTCGAGCTGTTGACGGAGCGGCTCGATGTCATTGCCGACTTGCTGGCTGTGCTG
AAGGATCAGCTCAGCCACGGCCATGATGAGATGCTCGAGTGGATTGGTGAGCCGGTCTCCCCCTTTTATCTTTAT
TAGTGCTCCATGGCTGGCTGGCTATCCGAATCGTCGTTGGCTGACATGCCCTTCCAGTCATCATCCTCATCGCCA
TGGAGATTCTCGTGGCCGCCATCAACATCGTCGTCGACGTTTACGCAGGCGAGGCATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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