Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|6820
Gene name
LocationContig_780:5481..6417
Strand-
Gene length (bp)936
Transcript length (bp)729
Coding sequence length (bp)729
Protein length (aa) 243

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01302 CAP_GLY CAP-Gly domain 5.9E-24 154 225
PF14560 Ubiquitin_2 Ubiquitin-like domain 6.2E-19 3 86

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q10235|ALP11_SCHPO Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp11 PE=1 SV=1 1 239 2.0E-60
sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2 15 234 2.0E-31
sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1 15 234 3.0E-31
sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=tbcb-1 PE=1 SV=1 1 233 6.0E-31
sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2 15 234 1.0E-30
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Swissprot ID Swissprot Description Start End E-value
sp|Q10235|ALP11_SCHPO Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp11 PE=1 SV=1 1 239 2.0E-60
sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2 15 234 2.0E-31
sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1 15 234 3.0E-31
sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=tbcb-1 PE=1 SV=1 1 233 6.0E-31
sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2 15 234 1.0E-30
sp|Q67Z52|TBCB_ARATH Tubulin-folding cofactor B OS=Arabidopsis thaliana GN=TFCB PE=1 SV=1 1 234 3.0E-22
sp|Q54Z01|TBCB_DICDI Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb PE=3 SV=1 17 231 2.0E-16
sp|P53904|TBCB_YEAST Tubulin-specific chaperone B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALF1 PE=1 SV=1 15 226 1.0E-13
sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ro-3 PE=3 SV=3 151 222 2.0E-13
sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2 PE=1 SV=1 152 220 3.0E-13
sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2 PE=1 SV=2 150 220 1.0E-12
sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus GN=Clip2 PE=1 SV=1 150 220 2.0E-12
sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus GN=CLIP1 PE=2 SV=1 141 231 3.0E-12
sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1 PE=1 SV=1 150 231 4.0E-12
sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1 PE=1 SV=2 141 231 5.0E-12
sp|Q5U243|CLIP3_XENLA CAP-Gly domain-containing linker protein 3 OS=Xenopus laevis GN=clip3 PE=2 SV=1 126 242 2.0E-10
sp|Q5R686|CLIP3_PONAB CAP-Gly domain-containing linker protein 3 OS=Pongo abelii GN=CLIP3 PE=2 SV=1 144 232 3.0E-10
sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=1 SV=2 143 226 3.0E-10
sp|Q96DZ5|CLIP3_HUMAN CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3 PE=1 SV=3 144 232 3.0E-10
sp|Q5R686|CLIP3_PONAB CAP-Gly domain-containing linker protein 3 OS=Pongo abelii GN=CLIP3 PE=2 SV=1 148 226 5.0E-10
sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3 132 226 6.0E-10
sp|P28023|DCTN1_RAT Dynactin subunit 1 OS=Rattus norvegicus GN=Dctn1 PE=1 SV=2 146 226 7.0E-10
sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn1 PE=1 SV=3 146 226 7.0E-10
sp|B9EHT4|CLIP3_MOUSE CAP-Gly domain-containing linker protein 3 OS=Mus musculus GN=Clip3 PE=1 SV=1 144 232 7.0E-10
sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus GN=CLIP1 PE=2 SV=1 153 225 2.0E-09
sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1 PE=1 SV=1 153 225 2.0E-09
sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2 PE=1 SV=2 154 225 2.0E-09
sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1 PE=1 SV=2 153 225 2.0E-09
sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus GN=Clip2 PE=1 SV=1 154 225 3.0E-09
sp|Q96DZ5|CLIP3_HUMAN CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3 PE=1 SV=3 154 226 3.0E-09
sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2 PE=1 SV=1 154 225 3.0E-09
sp|Q5U243|CLIP3_XENLA CAP-Gly domain-containing linker protein 3 OS=Xenopus laevis GN=clip3 PE=2 SV=1 144 232 1.0E-08
sp|B9EHT4|CLIP3_MOUSE CAP-Gly domain-containing linker protein 3 OS=Mus musculus GN=Clip3 PE=1 SV=1 154 236 2.0E-08
sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1 149 220 2.0E-08
sp|Q8N3C7|CLIP4_HUMAN CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4 PE=1 SV=1 152 226 2.0E-08
sp|Q66HD5|CLIP4_RAT CAP-Gly domain-containing linker protein 4 OS=Rattus norvegicus GN=Clip4 PE=1 SV=1 151 226 3.0E-08
sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1 PE=2 SV=1 143 226 3.0E-08
sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=2 152 231 3.0E-08
sp|Q8CI96|CLIP4_MOUSE CAP-Gly domain-containing linker protein 4 OS=Mus musculus GN=Clip4 PE=1 SV=1 151 226 2.0E-07
sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1 154 237 4.0E-07
sp|Q5VT06|CE350_HUMAN Centrosome-associated protein 350 OS=Homo sapiens GN=CEP350 PE=1 SV=1 152 241 5.0E-07
sp|P13496|DCTN1_DROME Dynactin subunit 1 OS=Drosophila melanogaster GN=Gl PE=1 SV=2 147 232 8.0E-07
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GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 38 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|6820
MADVPLQVISDNAVSERRVTPSWTISQLKARLETVTGIPPSSQVLRLRPSSGAEPIPVDAADEDSIRLCSFPLAP
YAELHVGDSRPPGARPNYTDTSGVDKYVMPDDEYGKKTDSVLAWKKAQKLGRFDPHHVHHQRARLDALELEVDRR
GIRVGSRCRVGGQDSRRGVVRYIGDVAEIPAGKGAWVGVELDEPVGKNDGSIAGTRYWGQPSELKHGVFVRPERI
EAGDYPPLDDLADMEEM*
Coding >Ophun1|6820
ATGGCCGACGTCCCTCTGCAGGTCATCTCCGACAACGCCGTCTCGGAGCGCCGCGTCACCCCGTCCTGGACCATC
AGTCAGCTCAAGGCCCGGCTCGAGACGGTGACGGGCATCCCCCCGTCGTCTCAAGTTTTGCGTCTCCGGCCGTCG
TCAGGGGCGGAACCGATCCCCGTCGACGCGGCAGACGAGGACAGCATCCGCTTGTGCAGCTTCCCCCTTGCTCCC
TACGCCGAGCTGCATGTAGGGGACTCCCGGCCGCCCGGAGCGCGGCCCAACTACACGGACACGTCGGGCGTCGAC
AAGTACGTCATGCCCGACGACGAGTACGGAAAGAAGACGGACTCGGTGCTGGCGTGGAAAAAGGCCCAGAAGCTG
GGCCGTTTCGACCCGCATCACGTTCATCATCAACGCGCCCGCCTCGACGCCCTCGAGCTAGAGGTCGACCGCCGG
GGCATCCGCGTTGGCAGCCGGTGCCGCGTCGGCGGCCAAGATAGCCGGCGTGGTGTCGTCCGTTACATCGGCGAC
GTTGCCGAGATCCCGGCCGGCAAGGGGGCATGGGTAGGCGTCGAGCTGGACGAGCCTGTCGGCAAGAACGACGGC
AGCATCGCCGGCACGCGATATTGGGGTCAACCGTCGGAGCTGAAGCACGGCGTCTTTGTGCGGCCCGAGCGGATA
GAGGCGGGCGACTATCCGCCCCTCGACGACCTGGCCGACATGGAGGAGATGTAG
Transcript >Ophun1|6820
ATGGCCGACGTCCCTCTGCAGGTCATCTCCGACAACGCCGTCTCGGAGCGCCGCGTCACCCCGTCCTGGACCATC
AGTCAGCTCAAGGCCCGGCTCGAGACGGTGACGGGCATCCCCCCGTCGTCTCAAGTTTTGCGTCTCCGGCCGTCG
TCAGGGGCGGAACCGATCCCCGTCGACGCGGCAGACGAGGACAGCATCCGCTTGTGCAGCTTCCCCCTTGCTCCC
TACGCCGAGCTGCATGTAGGGGACTCCCGGCCGCCCGGAGCGCGGCCCAACTACACGGACACGTCGGGCGTCGAC
AAGTACGTCATGCCCGACGACGAGTACGGAAAGAAGACGGACTCGGTGCTGGCGTGGAAAAAGGCCCAGAAGCTG
GGCCGTTTCGACCCGCATCACGTTCATCATCAACGCGCCCGCCTCGACGCCCTCGAGCTAGAGGTCGACCGCCGG
GGCATCCGCGTTGGCAGCCGGTGCCGCGTCGGCGGCCAAGATAGCCGGCGTGGTGTCGTCCGTTACATCGGCGAC
GTTGCCGAGATCCCGGCCGGCAAGGGGGCATGGGTAGGCGTCGAGCTGGACGAGCCTGTCGGCAAGAACGACGGC
AGCATCGCCGGCACGCGATATTGGGGTCAACCGTCGGAGCTGAAGCACGGCGTCTTTGTGCGGCCCGAGCGGATA
GAGGCGGGCGACTATCCGCCCCTCGACGACCTGGCCGACATGGAGGAGATGTAG
Gene >Ophun1|6820
ATGGCCGACGTCCCTCTGCAGGTCATCTCCGACAACGCCGTCTCGGAGCGCCGCGTCACCCCGTCCTGGACCATC
AGTCAGCTCAAGGCCCGGCTCGAGACGGTGACGGGCATCCCCCCGTCGTCTCAAGTTTTGCGTCTCCGGCCGTCG
TCAGGGGCGGAACCGATCCCCGTCGACGCGGCAGACGAGGACAGCATCCGCTTGTGCAGCTTCCCCCTTGCTCCC
TACGCCGAGCTGCATGTAAGTCGCCATGCAGCAGATTTCATTTGTCCCTTGTCAGGCCTTGATCCAGCAAGGGGT
CCCAGCAGCACCAAAACAAAGGGGAGGGGGCGTGCGTGTCTTGCCCTCGTCCGTTTCTTGGTGTGACAAGTCTGT
CTCGGCCATCTCTTTTCCCGCCGGCCGGGGGCCAGAGAGTCTAGCCTCGAGAGGCTGACTAAAAACTGACAGGTA
GGGGACTCCCGGCCGCCCGGAGCGCGGCCCAACTACACGGACACGTCGGGCGTCGACAAGTACGTCATGCCCGAC
GACGAGTACGGAAAGAAGACGGACTCGGTGCTGGCGTGGAAAAAGGCCCAGAAGCTGGGCCGTTTCGACCCGCAT
CACGTTCATCATCAACGCGCCCGCCTCGACGCCCTCGAGCTAGAGGTCGACCGCCGGGGCATCCGCGTTGGCAGC
CGGTGCCGCGTCGGCGGCCAAGATAGCCGGCGTGGTGTCGTCCGTTACATCGGCGACGTTGCCGAGATCCCGGCC
GGCAAGGGGGCATGGGTAGGCGTCGAGCTGGACGAGCCTGTCGGCAAGAACGACGGCAGCATCGCCGGCACGCGA
TATTGGGGTCAACCGTCGGAGCTGAAGCACGGCGTCTTTGTGCGGCCCGAGCGGATAGAGGCGGGCGACTATCCG
CCCCTCGACGACCTGGCCGACATGGAGGAGATGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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