© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|6779 |
| Gene name | |
| Location | Contig_773:862..1951 |
| Strand | + |
| Gene length (bp) | 1089 |
| Transcript length (bp) | 963 |
| Coding sequence length (bp) | 963 |
| Protein length (aa) | 321 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00293 | NUDIX | NUDIX domain | 1.0E-07 | 172 | 300 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9SZ63|NUD14_ARATH | Nudix hydrolase 14, chloroplastic OS=Arabidopsis thaliana GN=NUDT14 PE=1 SV=2 | 85 | 318 | 8.0E-44 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|6779 MCRWMQSASMLWAAGLLLAAALSWPLFQQHMASSLAHHLLKRSPFVHIHRHIHSNAMADGVRIDLPEGLTRDQLQ SFRPFKEWMATLNRSLARQTTASHPFHADPYALRSITVQSFDRFGGNRLGFVKLAASVSNAAGESLPGAALLRGP SVAVLFMLMPDDTDDVDDERYAVMTVQPRIPVGSMAFAELPAGMVDDAGSFKGAAAKEMEEELGITITDHDLTCL SELAVADDNDEGLATAMFPSAGGCDEHVTLYSHERRVPRDQLRDWTGRLTGLRSEGEKITLKLVPMRDLWREGAR DAKALGALALWEALRREGRL* |
| Coding | >Ophun1|6779 ATGTGTCGCTGGATGCAATCTGCCTCGATGCTGTGGGCTGCAGGCTTGCTGCTGGCGGCGGCTCTATCATGGCCT CTCTTCCAGCAACACATGGCCAGCAGCCTCGCTCATCACCTGCTGAAGCGCTCTCCCTTTGTCCATATCCATCGA CACATCCATAGCAACGCCATGGCCGACGGCGTTCGCATCGATCTGCCCGAAGGCCTGACGCGGGACCAACTTCAG TCCTTCAGGCCCTTCAAGGAATGGATGGCCACGCTCAATAGATCCCTCGCTCGCCAGACGACGGCCTCGCATCCC TTCCACGCCGACCCCTACGCCCTCCGCTCCATCACAGTCCAGTCCTTCGACCGCTTCGGCGGCAACCGTCTCGGC TTTGTCAAGCTCGCGGCCTCAGTCTCCAACGCGGCGGGCGAGAGCCTCCCGGGCGCGGCTCTCCTTCGCGGACCC TCGGTCGCCGTCCTCTTTATGCTGATGCCCGACGATACTGACGACGTGGACGATGAGCGCTACGCCGTCATGACC GTTCAACCGCGCATTCCGGTCGGCAGCATGGCTTTTGCAGAGCTGCCGGCTGGCATGGTCGACGATGCTGGCAGC TTCAAGGGCGCGGCGGCCAAGGAGATGGAGGAGGAGCTGGGCATTACCATTACCGATCATGACCTGACGTGCTTG AGTGAATTAGCCGTCGCGGATGACAACGACGAGGGTCTGGCGACCGCCATGTTCCCCAGCGCAGGCGGCTGCGAC GAGCACGTCACGCTGTATAGCCATGAGCGTCGCGTCCCAAGGGACCAACTGCGCGACTGGACTGGGCGCTTGACG GGGTTGCGGTCAGAGGGCGAGAAGATTACGCTCAAGTTGGTGCCGATGAGAGATCTGTGGCGCGAGGGTGCTCGA GATGCCAAGGCGTTGGGAGCGTTGGCCTTGTGGGAGGCGCTGCGAAGGGAGGGCCGTCTGTAG |
| Transcript | >Ophun1|6779 ATGTGTCGCTGGATGCAATCTGCCTCGATGCTGTGGGCTGCAGGCTTGCTGCTGGCGGCGGCTCTATCATGGCCT CTCTTCCAGCAACACATGGCCAGCAGCCTCGCTCATCACCTGCTGAAGCGCTCTCCCTTTGTCCATATCCATCGA CACATCCATAGCAACGCCATGGCCGACGGCGTTCGCATCGATCTGCCCGAAGGCCTGACGCGGGACCAACTTCAG TCCTTCAGGCCCTTCAAGGAATGGATGGCCACGCTCAATAGATCCCTCGCTCGCCAGACGACGGCCTCGCATCCC TTCCACGCCGACCCCTACGCCCTCCGCTCCATCACAGTCCAGTCCTTCGACCGCTTCGGCGGCAACCGTCTCGGC TTTGTCAAGCTCGCGGCCTCAGTCTCCAACGCGGCGGGCGAGAGCCTCCCGGGCGCGGCTCTCCTTCGCGGACCC TCGGTCGCCGTCCTCTTTATGCTGATGCCCGACGATACTGACGACGTGGACGATGAGCGCTACGCCGTCATGACC GTTCAACCGCGCATTCCGGTCGGCAGCATGGCTTTTGCAGAGCTGCCGGCTGGCATGGTCGACGATGCTGGCAGC TTCAAGGGCGCGGCGGCCAAGGAGATGGAGGAGGAGCTGGGCATTACCATTACCGATCATGACCTGACGTGCTTG AGTGAATTAGCCGTCGCGGATGACAACGACGAGGGTCTGGCGACCGCCATGTTCCCCAGCGCAGGCGGCTGCGAC GAGCACGTCACGCTGTATAGCCATGAGCGTCGCGTCCCAAGGGACCAACTGCGCGACTGGACTGGGCGCTTGACG GGGTTGCGGTCAGAGGGCGAGAAGATTACGCTCAAGTTGGTGCCGATGAGAGATCTGTGGCGCGAGGGTGCTCGA GATGCCAAGGCGTTGGGAGCGTTGGCCTTGTGGGAGGCGCTGCGAAGGGAGGGCCGTCTGTAG |
| Gene | >Ophun1|6779 ATGTGTCGCTGGATGCAATCTGCCTCGATGTAGGTGGTCTAGAACACGTGACCATCACCATCTTCACCGTTGACG TCATTGCCCGAGCTGACCCGTACTCAAGGCTGTGGGCTGCAGGCTTGCTGCTGGCGGCGGCTCTATCATGGCCTC TCTTCCAGCAACACATGGCCAGCAGCCTCGCTCATCACCTGCTGAAGCGCTCTCCCTTTGTCCATATCCATCGAC ACATCCATAGCAACGCCATGGCCGACGGCGTTCGCATCGATCTGCCCGAAGGCCTGACGCGGGACCAACTTCAGT CCTTCAGGCCCTTCAAGGTGCTATCAACCTGATGGAAACAGAGCTCCATAACCGCTGACCTTGACACAGGAATGG ATGGCCACGCTCAATAGATCCCTCGCTCGCCAGACGACGGCCTCGCATCCCTTCCACGCCGACCCCTACGCCCTC CGCTCCATCACAGTCCAGTCCTTCGACCGCTTCGGCGGCAACCGTCTCGGCTTTGTCAAGCTCGCGGCCTCAGTC TCCAACGCGGCGGGCGAGAGCCTCCCGGGCGCGGCTCTCCTTCGCGGACCCTCGGTCGCCGTCCTCTTTATGCTG ATGCCCGACGATACTGACGACGTGGACGATGAGCGCTACGCCGTCATGACCGTTCAACCGCGCATTCCGGTCGGC AGCATGGCTTTTGCAGAGCTGCCGGCTGGCATGGTCGACGATGCTGGCAGCTTCAAGGGCGCGGCGGCCAAGGAG ATGGAGGAGGAGCTGGGCATTACCATTACCGATCATGACCTGACGTGCTTGAGTGAATTAGCCGTCGCGGATGAC AACGACGAGGGTCTGGCGACCGCCATGTTCCCCAGCGCAGGCGGCTGCGACGAGCACGTCACGCTGTATAGCCAT GAGCGTCGCGTCCCAAGGGACCAACTGCGCGACTGGACTGGGCGCTTGACGGGGTTGCGGTCAGAGGGCGAGAAG ATTACGCTCAAGTTGGTGCCGATGAGAGATCTGTGGCGCGAGGGTGCTCGAGATGCCAAGGCGTTGGGAGCGTTG GCCTTGTGGGAGGCGCTGCGAAGGGAGGGCCGTCTGTAG |