© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|666 |
| Gene name | |
| Location | Contig_121:1546..2956 |
| Strand | - |
| Gene length (bp) | 1410 |
| Transcript length (bp) | 1410 |
| Coding sequence length (bp) | 1410 |
| Protein length (aa) | 470 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01062 | Bestrophin | Bestrophin, RFP-TM, chloride channel | 5.6E-42 | 54 | 376 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P72926|Y1024_SYNY3 | UPF0187 protein sll1024 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1024 PE=3 SV=2 | 56 | 383 | 6.0E-29 |
| sp|Q8YSU5|Y2987_NOSS1 | UPF0187 protein alr2987 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2987 PE=3 SV=1 | 48 | 388 | 6.0E-26 |
| sp|Q8ZPI0|YNEE_SALTY | UPF0187 protein YneE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yneE PE=3 SV=2 | 61 | 382 | 2.0E-21 |
| sp|Q8Z706|YNEE_SALTI | UPF0187 protein YneE OS=Salmonella typhi GN=yneE PE=3 SV=2 | 61 | 382 | 2.0E-21 |
| sp|Q8XAZ3|YNEE_ECO57 | UPF0187 protein YneE OS=Escherichia coli O157:H7 GN=yneE PE=3 SV=2 | 61 | 382 | 6.0E-21 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P72926|Y1024_SYNY3 | UPF0187 protein sll1024 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1024 PE=3 SV=2 | 56 | 383 | 6.0E-29 |
| sp|Q8YSU5|Y2987_NOSS1 | UPF0187 protein alr2987 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2987 PE=3 SV=1 | 48 | 388 | 6.0E-26 |
| sp|Q8ZPI0|YNEE_SALTY | UPF0187 protein YneE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yneE PE=3 SV=2 | 61 | 382 | 2.0E-21 |
| sp|Q8Z706|YNEE_SALTI | UPF0187 protein YneE OS=Salmonella typhi GN=yneE PE=3 SV=2 | 61 | 382 | 2.0E-21 |
| sp|Q8XAZ3|YNEE_ECO57 | UPF0187 protein YneE OS=Escherichia coli O157:H7 GN=yneE PE=3 SV=2 | 61 | 382 | 6.0E-21 |
| sp|P76146|YNEE_ECOLI | UPF0187 protein YneE OS=Escherichia coli (strain K12) GN=yneE PE=3 SV=2 | 61 | 382 | 1.0E-20 |
| sp|Q98E66|Y4386_RHILO | UPF0187 protein mll4386 OS=Rhizobium loti (strain MAFF303099) GN=mll4386 PE=3 SV=1 | 56 | 375 | 1.0E-15 |
| sp|Q8XTY1|Y3414_RALSO | UPF0187 protein RSc3414 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc3414 PE=3 SV=1 | 276 | 373 | 2.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005254 | chloride channel activity | Yes |
| GO:0008509 | anion transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0015267 | channel activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005253 | anion channel activity | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0015103 | inorganic anion transmembrane transporter activity | No |
| GO:0005216 | ion channel activity | No |
| GO:0015108 | chloride transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 61 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 56 | 78 | 22 |
| 2 | 93 | 112 | 19 |
| 3 | 301 | 323 | 22 |
| 4 | 333 | 355 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|666 MDDGGRPQSPRSPVSASSPPNGPDPEPSARHHGSGLDLNDYFTGPRDMARHSRWPLLLRLHGSILPKLILPVILI SIWSATITIVSIKVHPLGVHSVLLTLTGFVVSLSLSFRCSTAYERYSEGRKYWTGLVQASHVLGRVFWIHAKDGP DMDPREGLLLRLTSMNLVVAFALSLKHGLRFEPYLYPDMATLVDHLNTWASAATTTTTTADDPSGSRLRRRRFFH SVGEYLGLSFTASNPRKALKRATQPLGHLPLEILGHLAIAIDALVADQQLTVPAHQTLAYNALQSLNDVMTGTER VLCTPLPIAYSIAISQATYLYLALLPFQLIPLLHWIAIPATIAASCIILSLLFIGQEIEDPFGHDVNDLPLDSYC DQIAADLDVIASIDTREPRAFLTSRRNRPLHPVSTAPYDVWLQRDEERLREAVRQKPAARFEWARWGKSNGSKVS TGSGSIASNNNSSSSEKQG* |
| Coding | >Ophun1|666 ATGGACGACGGCGGCCGGCCCCAGTCGCCCCGCAGCCCCGTCTCGGCCTCCTCTCCACCGAACGGCCCCGATCCC GAACCGTCGGCCCGTCATCACGGCTCGGGCCTCGATCTCAATGACTACTTCACCGGCCCGCGCGATATGGCGCGT CATAGCCGCTGGCCGCTCCTGCTGCGGCTTCACGGCAGCATCCTCCCAAAGCTGATCTTGCCCGTCATCCTCATC AGCATCTGGAGCGCCACCATCACCATCGTGTCCATCAAGGTGCACCCGCTAGGCGTACACTCGGTGCTACTGACG CTTACGGGCTTCGTCGTCTCGCTGTCGCTGTCGTTCCGATGCTCGACTGCGTACGAACGCTACTCGGAGGGTCGA AAGTACTGGACTGGTCTCGTTCAGGCCTCGCACGTACTTGGCCGCGTCTTCTGGATACATGCCAAGGACGGACCG GATATGGATCCTCGCGAGGGCTTGCTGCTGCGGCTGACGTCGATGAATCTGGTCGTCGCGTTTGCTCTCTCGCTG AAACATGGCCTGCGCTTCGAGCCTTACTTGTATCCAGATATGGCCACCCTTGTCGACCATCTCAATACGTGGGCG TCTGCGGCAACGACGACGACGACGACAGCTGATGATCCGTCTGGCTCCCGTCTTCGTCGACGTCGCTTCTTCCAT AGCGTGGGCGAATATCTCGGCCTCTCCTTTACAGCCAGCAACCCGCGAAAGGCGCTCAAACGAGCCACACAACCG CTGGGTCACCTCCCGCTCGAGATCCTCGGTCACCTGGCCATCGCCATCGACGCCCTCGTCGCCGACCAGCAGTTG ACGGTGCCGGCGCATCAGACGTTGGCCTACAACGCCTTACAGTCGCTCAACGACGTCATGACGGGCACCGAGCGA GTCCTCTGCACGCCCCTGCCCATCGCCTACTCCATCGCCATCTCCCAGGCCACCTACCTGTATCTGGCCCTGCTG CCCTTTCAGCTGATCCCGCTGCTGCACTGGATCGCCATCCCGGCCACCATTGCCGCCTCGTGCATCATACTCAGC CTGCTCTTCATCGGCCAGGAGATTGAGGACCCCTTTGGCCACGACGTCAACGACCTGCCTCTCGACAGCTACTGC GACCAGATTGCCGCCGATCTCGACGTCATCGCCTCCATCGACACGCGTGAGCCTCGCGCCTTTCTCACCAGCCGT CGCAACCGACCGCTGCATCCTGTCAGCACGGCACCGTACGATGTTTGGCTTCAGCGAGACGAGGAGAGGCTGCGA GAGGCGGTCCGGCAGAAGCCTGCTGCCCGGTTCGAGTGGGCGAGATGGGGGAAGAGTAACGGAAGCAAGGTTAGC ACGGGCTCTGGTAGCATTGCGAGCAACAACAACAGCAGCAGCAGCGAGAAACAGGGCTGA |
| Transcript | >Ophun1|666 ATGGACGACGGCGGCCGGCCCCAGTCGCCCCGCAGCCCCGTCTCGGCCTCCTCTCCACCGAACGGCCCCGATCCC GAACCGTCGGCCCGTCATCACGGCTCGGGCCTCGATCTCAATGACTACTTCACCGGCCCGCGCGATATGGCGCGT CATAGCCGCTGGCCGCTCCTGCTGCGGCTTCACGGCAGCATCCTCCCAAAGCTGATCTTGCCCGTCATCCTCATC AGCATCTGGAGCGCCACCATCACCATCGTGTCCATCAAGGTGCACCCGCTAGGCGTACACTCGGTGCTACTGACG CTTACGGGCTTCGTCGTCTCGCTGTCGCTGTCGTTCCGATGCTCGACTGCGTACGAACGCTACTCGGAGGGTCGA AAGTACTGGACTGGTCTCGTTCAGGCCTCGCACGTACTTGGCCGCGTCTTCTGGATACATGCCAAGGACGGACCG GATATGGATCCTCGCGAGGGCTTGCTGCTGCGGCTGACGTCGATGAATCTGGTCGTCGCGTTTGCTCTCTCGCTG AAACATGGCCTGCGCTTCGAGCCTTACTTGTATCCAGATATGGCCACCCTTGTCGACCATCTCAATACGTGGGCG TCTGCGGCAACGACGACGACGACGACAGCTGATGATCCGTCTGGCTCCCGTCTTCGTCGACGTCGCTTCTTCCAT AGCGTGGGCGAATATCTCGGCCTCTCCTTTACAGCCAGCAACCCGCGAAAGGCGCTCAAACGAGCCACACAACCG CTGGGTCACCTCCCGCTCGAGATCCTCGGTCACCTGGCCATCGCCATCGACGCCCTCGTCGCCGACCAGCAGTTG ACGGTGCCGGCGCATCAGACGTTGGCCTACAACGCCTTACAGTCGCTCAACGACGTCATGACGGGCACCGAGCGA GTCCTCTGCACGCCCCTGCCCATCGCCTACTCCATCGCCATCTCCCAGGCCACCTACCTGTATCTGGCCCTGCTG CCCTTTCAGCTGATCCCGCTGCTGCACTGGATCGCCATCCCGGCCACCATTGCCGCCTCGTGCATCATACTCAGC CTGCTCTTCATCGGCCAGGAGATTGAGGACCCCTTTGGCCACGACGTCAACGACCTGCCTCTCGACAGCTACTGC GACCAGATTGCCGCCGATCTCGACGTCATCGCCTCCATCGACACGCGTGAGCCTCGCGCCTTTCTCACCAGCCGT CGCAACCGACCGCTGCATCCTGTCAGCACGGCACCGTACGATGTTTGGCTTCAGCGAGACGAGGAGAGGCTGCGA GAGGCGGTCCGGCAGAAGCCTGCTGCCCGGTTCGAGTGGGCGAGATGGGGGAAGAGTAACGGAAGCAAGGTTAGC ACGGGCTCTGGTAGCATTGCGAGCAACAACAACAGCAGCAGCAGCGAGAAACAGGGCTGA |
| Gene | >Ophun1|666 ATGGACGACGGCGGCCGGCCCCAGTCGCCCCGCAGCCCCGTCTCGGCCTCCTCTCCACCGAACGGCCCCGATCCC GAACCGTCGGCCCGTCATCACGGCTCGGGCCTCGATCTCAATGACTACTTCACCGGCCCGCGCGATATGGCGCGT CATAGCCGCTGGCCGCTCCTGCTGCGGCTTCACGGCAGCATCCTCCCAAAGCTGATCTTGCCCGTCATCCTCATC AGCATCTGGAGCGCCACCATCACCATCGTGTCCATCAAGGTGCACCCGCTAGGCGTACACTCGGTGCTACTGACG CTTACGGGCTTCGTCGTCTCGCTGTCGCTGTCGTTCCGATGCTCGACTGCGTACGAACGCTACTCGGAGGGTCGA AAGTACTGGACTGGTCTCGTTCAGGCCTCGCACGTACTTGGCCGCGTCTTCTGGATACATGCCAAGGACGGACCG GATATGGATCCTCGCGAGGGCTTGCTGCTGCGGCTGACGTCGATGAATCTGGTCGTCGCGTTTGCTCTCTCGCTG AAACATGGCCTGCGCTTCGAGCCTTACTTGTATCCAGATATGGCCACCCTTGTCGACCATCTCAATACGTGGGCG TCTGCGGCAACGACGACGACGACGACAGCTGATGATCCGTCTGGCTCCCGTCTTCGTCGACGTCGCTTCTTCCAT AGCGTGGGCGAATATCTCGGCCTCTCCTTTACAGCCAGCAACCCGCGAAAGGCGCTCAAACGAGCCACACAACCG CTGGGTCACCTCCCGCTCGAGATCCTCGGTCACCTGGCCATCGCCATCGACGCCCTCGTCGCCGACCAGCAGTTG ACGGTGCCGGCGCATCAGACGTTGGCCTACAACGCCTTACAGTCGCTCAACGACGTCATGACGGGCACCGAGCGA GTCCTCTGCACGCCCCTGCCCATCGCCTACTCCATCGCCATCTCCCAGGCCACCTACCTGTATCTGGCCCTGCTG CCCTTTCAGCTGATCCCGCTGCTGCACTGGATCGCCATCCCGGCCACCATTGCCGCCTCGTGCATCATACTCAGC CTGCTCTTCATCGGCCAGGAGATTGAGGACCCCTTTGGCCACGACGTCAACGACCTGCCTCTCGACAGCTACTGC GACCAGATTGCCGCCGATCTCGACGTCATCGCCTCCATCGACACGCGTGAGCCTCGCGCCTTTCTCACCAGCCGT CGCAACCGACCGCTGCATCCTGTCAGCACGGCACCGTACGATGTTTGGCTTCAGCGAGACGAGGAGAGGCTGCGA GAGGCGGTCCGGCAGAAGCCTGCTGCCCGGTTCGAGTGGGCGAGATGGGGGAAGAGTAACGGAAGCAAGGTTAGC ACGGGCTCTGGTAGCATTGCGAGCAACAACAACAGCAGCAGCAGCGAGAAACAGGGCTGA |