© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|6659 |
| Gene name | |
| Location | Contig_747:3042..4510 |
| Strand | - |
| Gene length (bp) | 1468 |
| Transcript length (bp) | 1143 |
| Coding sequence length (bp) | 1143 |
| Protein length (aa) | 381 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00627 | UBA | UBA/TS-N domain | 3.6E-11 | 140 | 174 |
| PF00627 | UBA | UBA/TS-N domain | 2.2E-13 | 333 | 368 |
| PF09280 | XPC-binding | XPC-binding domain | 1.0E-24 | 258 | 313 |
| PF00240 | ubiquitin | Ubiquitin family | 6.1E-18 | 3 | 73 |
| PF11976 | Rad60-SLD | Ubiquitin-2 like Rad60 SUMO-like | 4.2E-08 | 1 | 64 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74803|RHP23_SCHPO | UV excision repair protein rhp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp23 PE=1 SV=1 | 1 | 377 | 3.0E-95 |
| sp|P54728|RD23B_MOUSE | UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=2 | 1 | 376 | 5.0E-67 |
| sp|Q29RK4|RD23B_BOVIN | UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1 | 1 | 376 | 1.0E-66 |
| sp|P54727|RD23B_HUMAN | UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1 | 1 | 376 | 3.0E-66 |
| sp|Q4KMA2|RD23B_RAT | UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1 | 1 | 376 | 3.0E-64 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74803|RHP23_SCHPO | UV excision repair protein rhp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp23 PE=1 SV=1 | 1 | 377 | 3.0E-95 |
| sp|P54728|RD23B_MOUSE | UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=2 | 1 | 376 | 5.0E-67 |
| sp|Q29RK4|RD23B_BOVIN | UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1 | 1 | 376 | 1.0E-66 |
| sp|P54727|RD23B_HUMAN | UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1 | 1 | 376 | 3.0E-66 |
| sp|Q4KMA2|RD23B_RAT | UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1 | 1 | 376 | 3.0E-64 |
| sp|P32628|RAD23_YEAST | UV excision repair protein RAD23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD23 PE=1 SV=1 | 1 | 369 | 6.0E-61 |
| sp|Q84L33|RD23B_ARATH | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana GN=RAD23B PE=1 SV=3 | 1 | 376 | 1.0E-59 |
| sp|A3KMV2|RD23A_BOVIN | UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1 | 1 | 376 | 2.0E-59 |
| sp|Q84L32|RD23A_ARATH | Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana GN=RAD23A PE=1 SV=2 | 1 | 376 | 8.0E-59 |
| sp|P54725|RD23A_HUMAN | UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1 | 1 | 376 | 3.0E-58 |
| sp|P54726|RD23A_MOUSE | UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=2 | 1 | 376 | 3.0E-57 |
| sp|Q84L30|RD23D_ARATH | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana GN=RAD23D PE=1 SV=2 | 1 | 376 | 1.0E-55 |
| sp|Q84L31|RD23C_ARATH | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana GN=RAD23C PE=1 SV=2 | 1 | 376 | 2.0E-55 |
| sp|Q40742|RAD23_ORYSJ | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2 | 1 | 371 | 1.0E-50 |
| sp|Q54LV1|RAD23_DICDI | UV excision repair protein RAD23 homolog OS=Dictyostelium discoideum GN=rcbA PE=1 SV=1 | 261 | 375 | 3.0E-18 |
| sp|Q54LV1|RAD23_DICDI | UV excision repair protein RAD23 homolog OS=Dictyostelium discoideum GN=rcbA PE=1 SV=1 | 1 | 76 | 1.0E-12 |
| sp|P48510|DSK2_YEAST | Ubiquitin domain-containing protein DSK2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DSK2 PE=1 SV=2 | 10 | 75 | 2.0E-07 |
| sp|O65381|RUB3_ARATH | NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1 | 1 | 71 | 6.0E-07 |
| sp|O14399|UBL1_SCHPO | Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubl1 PE=3 SV=1 | 1 | 62 | 2.0E-06 |
| sp|P0C031|RUB2_ORYSJ | Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=2 SV=2 | 3 | 71 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006289 | nucleotide-excision repair | Yes |
| GO:0003684 | damaged DNA binding | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | Yes |
| GO:0009056 | catabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0010498 | proteasomal protein catabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044248 | cellular catabolic process | No |
| GO:0044265 | cellular macromolecule catabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0030163 | protein catabolic process | No |
| GO:0006508 | proteolysis | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0006950 | response to stress | No |
| GO:0043632 | modification-dependent macromolecule catabolic process | No |
| GO:1901575 | organic substance catabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0005488 | binding | No |
| GO:0008150 | biological_process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0003677 | DNA binding | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0019941 | modification-dependent protein catabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0051603 | proteolysis involved in protein catabolic process | No |
| GO:0033554 | cellular response to stress | No |
| GO:0006281 | DNA repair | No |
| GO:1901565 | organonitrogen compound catabolic process | No |
| GO:0009057 | macromolecule catabolic process | No |
| GO:0006511 | ubiquitin-dependent protein catabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|6659 MKITFRDLKQQKFSLDVEPTDLVSTLKEMISADKSWDPKHVKLIYSGKILKDDETVESYNIEEKGFVVCMVNKPK EKPPVAPSNPAAESSAAPSTAPAASSQSASAQATAPATPTPSRPADTPATGAGDSSGLAMGAQRAEAITNMEAMG FERSQIEAAMRAAFNNPDRAVEYILNGIPENIQQEQQQRAAPAAAVPAPASTQAAPEAQGSDDDGGINLFDLAAQ QGGGAGASRGGGSASAAAAAAAAAAQGGDLGNLDFLRHNPQFQQLRQVVQQQPQMLEPILQQLGAGNPHLAQLIA AHPDQFLQLLGEDVDDDVPLPPGAQAISVTEEERDAIERLCRLGFDRDQAIQAYFACDKNEELAANFLFDQPEDD EPSAN* |
| Coding | >Ophun1|6659 ATGAAGATCACATTTCGGGATTTGAAGCAGCAAAAATTTTCTCTCGACGTCGAGCCCACCGATCTGGTTTCTACC CTCAAGGAGATGATTTCGGCCGACAAGAGCTGGGACCCCAAACATGTGAAGCTCATCTACTCAGGCAAAATCCTC AAAGATGATGAGACTGTTGAATCCTACAATATCGAAGAGAAAGGCTTTGTCGTTTGCATGGTAAACAAGCCCAAG GAGAAGCCTCCAGTTGCCCCATCGAATCCTGCTGCCGAGTCCTCCGCCGCGCCCTCGACGGCGCCTGCTGCGTCT TCTCAGTCCGCTTCGGCCCAGGCGACGGCGCCCGCTACCCCGACGCCTTCACGTCCCGCTGACACGCCAGCTACA GGTGCTGGGGATTCGTCTGGTCTCGCCATGGGCGCTCAGCGCGCCGAGGCCATCACCAATATGGAAGCCATGGGT TTCGAGAGGTCCCAGATCGAGGCTGCGATGCGGGCCGCCTTCAACAACCCCGATCGAGCTGTCGAATACATCCTT AATGGAATCCCCGAAAACATTCAGCAGGAGCAACAGCAACGCGCCGCCCCCGCCGCCGCTGTCCCTGCTCCCGCC TCCACCCAAGCAGCTCCCGAAGCCCAAGGAAGCGACGACGACGGCGGCATCAACCTCTTCGATCTCGCTGCCCAA CAGGGAGGTGGTGCCGGGGCGTCCCGAGGCGGCGGAAGCGCTTCTGCCGCTGCTGCCGCTGCCGCTGCCGCCGCT CAGGGCGGAGATCTCGGCAATCTGGACTTCCTGAGACATAACCCGCAGTTCCAGCAGCTCCGCCAAGTCGTCCAG CAACAGCCTCAGATGCTGGAGCCTATTCTGCAGCAACTCGGAGCAGGGAACCCGCACCTGGCCCAGCTCATCGCC GCCCACCCCGACCAGTTCCTTCAGCTTCTCGGAGAGGACGTGGATGATGATGTGCCTCTGCCCCCTGGCGCGCAG GCCATCTCCGTGACTGAGGAAGAGCGCGATGCCATCGAACGGTTATGTAGGCTAGGCTTCGATCGAGACCAGGCC ATTCAAGCCTACTTCGCCTGCGACAAGAATGAGGAACTGGCGGCCAACTTCCTCTTTGATCAGCCCGAAGACGAC GAACCCTCTGCAAATTGA |
| Transcript | >Ophun1|6659 ATGAAGATCACATTTCGGGATTTGAAGCAGCAAAAATTTTCTCTCGACGTCGAGCCCACCGATCTGGTTTCTACC CTCAAGGAGATGATTTCGGCCGACAAGAGCTGGGACCCCAAACATGTGAAGCTCATCTACTCAGGCAAAATCCTC AAAGATGATGAGACTGTTGAATCCTACAATATCGAAGAGAAAGGCTTTGTCGTTTGCATGGTAAACAAGCCCAAG GAGAAGCCTCCAGTTGCCCCATCGAATCCTGCTGCCGAGTCCTCCGCCGCGCCCTCGACGGCGCCTGCTGCGTCT TCTCAGTCCGCTTCGGCCCAGGCGACGGCGCCCGCTACCCCGACGCCTTCACGTCCCGCTGACACGCCAGCTACA GGTGCTGGGGATTCGTCTGGTCTCGCCATGGGCGCTCAGCGCGCCGAGGCCATCACCAATATGGAAGCCATGGGT TTCGAGAGGTCCCAGATCGAGGCTGCGATGCGGGCCGCCTTCAACAACCCCGATCGAGCTGTCGAATACATCCTT AATGGAATCCCCGAAAACATTCAGCAGGAGCAACAGCAACGCGCCGCCCCCGCCGCCGCTGTCCCTGCTCCCGCC TCCACCCAAGCAGCTCCCGAAGCCCAAGGAAGCGACGACGACGGCGGCATCAACCTCTTCGATCTCGCTGCCCAA CAGGGAGGTGGTGCCGGGGCGTCCCGAGGCGGCGGAAGCGCTTCTGCCGCTGCTGCCGCTGCCGCTGCCGCCGCT CAGGGCGGAGATCTCGGCAATCTGGACTTCCTGAGACATAACCCGCAGTTCCAGCAGCTCCGCCAAGTCGTCCAG CAACAGCCTCAGATGCTGGAGCCTATTCTGCAGCAACTCGGAGCAGGGAACCCGCACCTGGCCCAGCTCATCGCC GCCCACCCCGACCAGTTCCTTCAGCTTCTCGGAGAGGACGTGGATGATGATGTGCCTCTGCCCCCTGGCGCGCAG GCCATCTCCGTGACTGAGGAAGAGCGCGATGCCATCGAACGGTTATGTAGGCTAGGCTTCGATCGAGACCAGGCC ATTCAAGCCTACTTCGCCTGCGACAAGAATGAGGAACTGGCGGCCAACTTCCTCTTTGATCAGCCCGAAGACGAC GAACCCTCTGCAAATTGA |
| Gene | >Ophun1|6659 ATGAAGATCACATTTCGGGTACAGACTGTCCCCTCCATACCCCGAGATCTACTCACGCTGACTTTCTGCAGGATT TGAAGCAGCAAAAATTTTCTCTCGACGTCGAGCCCACCGATCTGGTACGCCCGCGCCCTCTTCTTTCCCTCTCCA TGTCTGCTTACGCCTCTCAGGTTTCTACCCTCAAGGAGATGATTTCGGCCGACAAGAGCTGGGACCCCAAACATG TGAAGCTCATCTACTCAGGTCAGAAAGCCCCGTCTCTCCTCCCGTCTTGTTTCGTCTCTGACGTGAAGCAGGCAA AATCCTCAAAGATGATGAGACTGTTGAATCCTACAATATCGAAGAGAAAGGCTTTGTCGTTTGCATGGTAAACAA GGTATGTCCGCATACCAGAGCAAACCTCTGCCTCGAAACTGACCCTTCTGGCCTCCAGCCCAAGGAGAAGCCTCC AGTTGCCCCATCGAATCCTGCTGCCGAGTCCTCCGCCGCGCCCTCGACGGCGCCTGCTGCGTCTTCTCAGTCCGC TTCGGCCCAGGCGACGGCGCCCGCTACCCCGACGCCTTCACGTCCCGCTGACACGCCAGCTACAGGTGCTGGGGA TTCGTCTGGTCTCGCCATGGGCGCTCAGCGCGCCGAGGCCATCACCAATATGGAAGCCATGGGTTTCGAGAGGTC CCAGATCGAGGCTGCGATGCGGGCCGCCTTCAACAACCCCGATCGAGCTGTCGAATACATCCTTAATGTGTGTTC TTGCCGCCCCTCTCCCCTCTAACGTCGCTGTCGCTGACAAGATTTCAGGGAATCCCCGAAAACATTCAGCAGGAG CAACAGCAACGCGCCGCCCCCGCCGCCGCTGTCCCTGCTCCCGCCTCCACCCAAGCAGCTCCCGAAGCCCAAGGA AGCGACGACGACGGCGGCATCAACCTCTTCGATCTCGCTGCCCAACAGGGAGGTGGTGCCGGGGCGTCCCGAGGC GGCGGAAGCGCTTCTGCCGCTGCTGCCGCTGCCGCTGCCGCCGCTCAGGGCGGAGATCTCGGCAATCTGGACTTC CTGAGACATAACCCGCAGTTCCAGCAGCTCCGCCAAGTCGTCCAGCAACAGCCTCAGATGCTGGAGCCTATTCTG CAGCAACTCGGAGCAGGGAACCCGCACCTGGCCCAGCTCATCGCCGCCCACCCCGACCAGTTCCTTCAGCTTCTC GGAGAGGACGTGGATGATGATGTGCCTCTGCCCCCTGGCGCGCAGGCCATCTCCGTGACTGAGGAAGAGCGCGAT GCCATCGAACGGGTATGTCTTCCACACTCGTCGGTGAGCAAGCTCTGCTGACGTTTGTCGACATTAGTTATGTAG GCTAGGCTTCGATCGAGACCAGGCCATTCAAGCCTACTTCGCCTGCGACAAGAATGAGGAACTGGCGGCCAACTT CCTCTTTGATCAGCCCGAAGACGACGAACCCTCTGCAAATTGA |