Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|6589
Gene name
LocationContig_73:24058..24605
Strand+
Gene length (bp)547
Transcript length (bp)372
Coding sequence length (bp)372
Protein length (aa) 124

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05129 Elf1 Transcription elongation factor Elf1 like 3.2E-14 32 83

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P36053|ELF1_YEAST Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELF1 PE=1 SV=1 1 79 2.0E-15
sp|O13868|ELOF1_SCHPO Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B3.02c PE=1 SV=1 1 87 2.0E-15
sp|Q9XVZ8|ELOF1_CAEEL Transcription elongation factor 1 homolog OS=Caenorhabditis elegans GN=Y54G11A.11 PE=3 SV=1 1 80 2.0E-11
sp|Q8MQI6|ELOF1_DROME Transcription elongation factor 1 homolog OS=Drosophila melanogaster GN=CG40228 PE=1 SV=1 1 80 2.0E-09
sp|Q8LHP0|ELOF1_ORYSJ Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1 1 79 9.0E-09
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P36053|ELF1_YEAST Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELF1 PE=1 SV=1 1 79 2.0E-15
sp|O13868|ELOF1_SCHPO Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B3.02c PE=1 SV=1 1 87 2.0E-15
sp|Q9XVZ8|ELOF1_CAEEL Transcription elongation factor 1 homolog OS=Caenorhabditis elegans GN=Y54G11A.11 PE=3 SV=1 1 80 2.0E-11
sp|Q8MQI6|ELOF1_DROME Transcription elongation factor 1 homolog OS=Drosophila melanogaster GN=CG40228 PE=1 SV=1 1 80 2.0E-09
sp|Q8LHP0|ELOF1_ORYSJ Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1 1 79 9.0E-09
sp|P60003|ELOF1_MOUSE Transcription elongation factor 1 homolog OS=Mus musculus GN=Elof1 PE=1 SV=1 34 80 2.0E-08
sp|P60002|ELOF1_HUMAN Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1 34 80 2.0E-08
sp|A4IFR3|ELOF1_BOVIN Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1 34 80 2.0E-08
sp|Q9U501|ELOF1_MANSE Transcription elongation factor 1 homolog OS=Manduca sexta PE=3 SV=1 1 79 2.0E-07
sp|Q8LEF3|ELOF1_ARATH Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1 1 78 2.0E-06
sp|Q54KR5|ELOF1_DICDI Transcription elongation factor 1 homolog OS=Dictyostelium discoideum GN=elof1 PE=3 SV=1 1 79 2.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 13 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|6589
MGKRKKSSRKPMGPKRVCHEHPILEFDTEVNSQTDPLPTMFTCLFCNHEKSVTVKLDRKAGVGQLDCRICGQKFQ
CAVNYAVAKQDTTETRMYEHTAPSSSNEQRQRGLRDTDGDVDQDRRSE*
Coding >Ophun1|6589
ATGGGCAAGCGCAAGAAGTCATCGAGAAAGCCCATGGGGCCCAAGAGGGTTTGTCACGAGCATCCGATTTTGGAG
TTCGATACTGAAGTCAACTCACAGACAGACCCTTTGCCCACCATGTTCACTTGCCTGTTTTGCAATCACGAAAAA
TCGGTAACCGTGAAGCTCGATAGGAAGGCAGGCGTCGGTCAACTCGATTGTCGCATCTGTGGGCAGAAATTTCAG
TGCGCAGTCAACTATGCCGTGGCGAAACAAGACACTACCGAAACCCGCATGTACGAGCATACAGCGCCTTCGTCT
TCAAACGAGCAGCGCCAGAGGGGTCTCAGAGACACAGACGGTGACGTTGATCAAGACAGACGGTCGGAATGA
Transcript >Ophun1|6589
ATGGGCAAGCGCAAGAAGTCATCGAGAAAGCCCATGGGGCCCAAGAGGGTTTGTCACGAGCATCCGATTTTGGAG
TTCGATACTGAAGTCAACTCACAGACAGACCCTTTGCCCACCATGTTCACTTGCCTGTTTTGCAATCACGAAAAA
TCGGTAACCGTGAAGCTCGATAGGAAGGCAGGCGTCGGTCAACTCGATTGTCGCATCTGTGGGCAGAAATTTCAG
TGCGCAGTCAACTATGCCGTGGCGAAACAAGACACTACCGAAACCCGCATGTACGAGCATACAGCGCCTTCGTCT
TCAAACGAGCAGCGCCAGAGGGGTCTCAGAGACACAGACGGTGACGTTGATCAAGACAGACGGTCGGAATGA
Gene >Ophun1|6589
ATGGGCAAGCGCAAGAAGTCATCGAGAAAGCCCATGGGGCCCAAGAGGGTTTGTCACGAGCATCCGATTTTGGAG
TTCGATACTGAAGTCAACTCACAGACAGACCCTTTGCCCACCATGTTCACTTGCCTGTTTTGCAATCACGAAAAA
TCGGTAACCGTGAAGCTCGATAGGAAGGCAGGCGTCGGTCAACTCGATTGTCGCATCTGTGGGCAGAAATTTCAG
TGCGCAGTCAACTGTATGTTCTCTCCGGATGCGGCGTGGAATTCGTGCATCTTCGGCTAACATGACATGAGATTT
ATCTGCGGCTGTCGACGTGTACGGTGAATGGGTTGACGCGGCTGGTAAATATGACCTCTTTCCGGCTGACGAAAC
TACTAAACGGAATAAAATGTGCTGACTTATATTATTAGATGCCGTGGCGAAACAAGACACTACCGAAACCCGCAT
GTACGAGCATACAGCGCCTTCGTCTTCAAACGAGCAGCGCCAGAGGGGTCTCAGAGACACAGACGGTGACGTTGA
TCAAGACAGACGGTCGGAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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