© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|6589 |
| Gene name | |
| Location | Contig_73:24058..24605 |
| Strand | + |
| Gene length (bp) | 547 |
| Transcript length (bp) | 372 |
| Coding sequence length (bp) | 372 |
| Protein length (aa) | 124 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05129 | Elf1 | Transcription elongation factor Elf1 like | 3.2E-14 | 32 | 83 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36053|ELF1_YEAST | Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELF1 PE=1 SV=1 | 1 | 79 | 2.0E-15 |
| sp|O13868|ELOF1_SCHPO | Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B3.02c PE=1 SV=1 | 1 | 87 | 2.0E-15 |
| sp|Q9XVZ8|ELOF1_CAEEL | Transcription elongation factor 1 homolog OS=Caenorhabditis elegans GN=Y54G11A.11 PE=3 SV=1 | 1 | 80 | 2.0E-11 |
| sp|Q8MQI6|ELOF1_DROME | Transcription elongation factor 1 homolog OS=Drosophila melanogaster GN=CG40228 PE=1 SV=1 | 1 | 80 | 2.0E-09 |
| sp|Q8LHP0|ELOF1_ORYSJ | Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1 | 1 | 79 | 9.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36053|ELF1_YEAST | Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELF1 PE=1 SV=1 | 1 | 79 | 2.0E-15 |
| sp|O13868|ELOF1_SCHPO | Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B3.02c PE=1 SV=1 | 1 | 87 | 2.0E-15 |
| sp|Q9XVZ8|ELOF1_CAEEL | Transcription elongation factor 1 homolog OS=Caenorhabditis elegans GN=Y54G11A.11 PE=3 SV=1 | 1 | 80 | 2.0E-11 |
| sp|Q8MQI6|ELOF1_DROME | Transcription elongation factor 1 homolog OS=Drosophila melanogaster GN=CG40228 PE=1 SV=1 | 1 | 80 | 2.0E-09 |
| sp|Q8LHP0|ELOF1_ORYSJ | Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1 | 1 | 79 | 9.0E-09 |
| sp|P60003|ELOF1_MOUSE | Transcription elongation factor 1 homolog OS=Mus musculus GN=Elof1 PE=1 SV=1 | 34 | 80 | 2.0E-08 |
| sp|P60002|ELOF1_HUMAN | Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1 | 34 | 80 | 2.0E-08 |
| sp|A4IFR3|ELOF1_BOVIN | Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1 | 34 | 80 | 2.0E-08 |
| sp|Q9U501|ELOF1_MANSE | Transcription elongation factor 1 homolog OS=Manduca sexta PE=3 SV=1 | 1 | 79 | 2.0E-07 |
| sp|Q8LEF3|ELOF1_ARATH | Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1 | 1 | 78 | 2.0E-06 |
| sp|Q54KR5|ELOF1_DICDI | Transcription elongation factor 1 homolog OS=Dictyostelium discoideum GN=elof1 PE=3 SV=1 | 1 | 79 | 2.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|6589 MGKRKKSSRKPMGPKRVCHEHPILEFDTEVNSQTDPLPTMFTCLFCNHEKSVTVKLDRKAGVGQLDCRICGQKFQ CAVNYAVAKQDTTETRMYEHTAPSSSNEQRQRGLRDTDGDVDQDRRSE* |
| Coding | >Ophun1|6589 ATGGGCAAGCGCAAGAAGTCATCGAGAAAGCCCATGGGGCCCAAGAGGGTTTGTCACGAGCATCCGATTTTGGAG TTCGATACTGAAGTCAACTCACAGACAGACCCTTTGCCCACCATGTTCACTTGCCTGTTTTGCAATCACGAAAAA TCGGTAACCGTGAAGCTCGATAGGAAGGCAGGCGTCGGTCAACTCGATTGTCGCATCTGTGGGCAGAAATTTCAG TGCGCAGTCAACTATGCCGTGGCGAAACAAGACACTACCGAAACCCGCATGTACGAGCATACAGCGCCTTCGTCT TCAAACGAGCAGCGCCAGAGGGGTCTCAGAGACACAGACGGTGACGTTGATCAAGACAGACGGTCGGAATGA |
| Transcript | >Ophun1|6589 ATGGGCAAGCGCAAGAAGTCATCGAGAAAGCCCATGGGGCCCAAGAGGGTTTGTCACGAGCATCCGATTTTGGAG TTCGATACTGAAGTCAACTCACAGACAGACCCTTTGCCCACCATGTTCACTTGCCTGTTTTGCAATCACGAAAAA TCGGTAACCGTGAAGCTCGATAGGAAGGCAGGCGTCGGTCAACTCGATTGTCGCATCTGTGGGCAGAAATTTCAG TGCGCAGTCAACTATGCCGTGGCGAAACAAGACACTACCGAAACCCGCATGTACGAGCATACAGCGCCTTCGTCT TCAAACGAGCAGCGCCAGAGGGGTCTCAGAGACACAGACGGTGACGTTGATCAAGACAGACGGTCGGAATGA |
| Gene | >Ophun1|6589 ATGGGCAAGCGCAAGAAGTCATCGAGAAAGCCCATGGGGCCCAAGAGGGTTTGTCACGAGCATCCGATTTTGGAG TTCGATACTGAAGTCAACTCACAGACAGACCCTTTGCCCACCATGTTCACTTGCCTGTTTTGCAATCACGAAAAA TCGGTAACCGTGAAGCTCGATAGGAAGGCAGGCGTCGGTCAACTCGATTGTCGCATCTGTGGGCAGAAATTTCAG TGCGCAGTCAACTGTATGTTCTCTCCGGATGCGGCGTGGAATTCGTGCATCTTCGGCTAACATGACATGAGATTT ATCTGCGGCTGTCGACGTGTACGGTGAATGGGTTGACGCGGCTGGTAAATATGACCTCTTTCCGGCTGACGAAAC TACTAAACGGAATAAAATGTGCTGACTTATATTATTAGATGCCGTGGCGAAACAAGACACTACCGAAACCCGCAT GTACGAGCATACAGCGCCTTCGTCTTCAAACGAGCAGCGCCAGAGGGGTCTCAGAGACACAGACGGTGACGTTGA TCAAGACAGACGGTCGGAATGA |