© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|6557 |
| Gene name | |
| Location | Contig_724:76..2229 |
| Strand | - |
| Gene length (bp) | 2153 |
| Transcript length (bp) | 1875 |
| Coding sequence length (bp) | 1875 |
| Protein length (aa) | 625 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07576 | BRAP2 | BRCA1-associated protein 2 | 1.0E-26 | 207 | 298 |
| PF02148 | zf-UBP | Zn-finger in ubiquitin-hydrolases and other protein | 7.6E-18 | 407 | 465 |
| PF13639 | zf-RING_2 | Ring finger domain | 9.2E-09 | 335 | 375 |
| PF17123 | zf-RING_11 | RING-like zinc finger | 5.0E-07 | 336 | 363 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 4.5E-06 | 336 | 374 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13747|EPT1_SCHPO | RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1 | 152 | 591 | 2.0E-92 |
| sp|P38748|ETP1_YEAST | RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ETP1 PE=1 SV=1 | 181 | 620 | 8.0E-76 |
| sp|Q99MP8|BRAP_MOUSE | BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1 | 104 | 599 | 2.0E-64 |
| sp|Q7Z569|BRAP_HUMAN | BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2 | 179 | 612 | 2.0E-64 |
| sp|Q95QN6|BRAP2_CAEEL | BRCA1-associated protein homolog 2 OS=Caenorhabditis elegans GN=brap-2 PE=3 SV=1 | 179 | 599 | 1.0E-59 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13747|EPT1_SCHPO | RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1 | 152 | 591 | 2.0E-92 |
| sp|P38748|ETP1_YEAST | RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ETP1 PE=1 SV=1 | 181 | 620 | 8.0E-76 |
| sp|Q99MP8|BRAP_MOUSE | BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1 | 104 | 599 | 2.0E-64 |
| sp|Q7Z569|BRAP_HUMAN | BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2 | 179 | 612 | 2.0E-64 |
| sp|Q95QN6|BRAP2_CAEEL | BRCA1-associated protein homolog 2 OS=Caenorhabditis elegans GN=brap-2 PE=3 SV=1 | 179 | 599 | 1.0E-59 |
| sp|D2HBJ8|UBP44_AILME | Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda melanoleuca GN=USP44 PE=3 SV=1 | 407 | 492 | 2.0E-07 |
| sp|Q0V9G5|UBP44_XENTR | Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopus tropicalis GN=usp44 PE=2 SV=1 | 407 | 464 | 2.0E-07 |
| sp|Q5XGZ2|UP44B_XENLA | Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis GN=usp44-b PE=2 SV=1 | 407 | 464 | 3.0E-07 |
| sp|Q6NTR6|UP44A_XENLA | Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis GN=usp44-a PE=2 SV=1 | 407 | 464 | 3.0E-07 |
| sp|Q7ZUM8|UBP44_DANRE | Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44 PE=2 SV=1 | 407 | 476 | 3.0E-07 |
| sp|Q9H0E7|UBP44_HUMAN | Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44 PE=1 SV=2 | 407 | 464 | 5.0E-07 |
| sp|Q8C2S0|UBP44_MOUSE | Ubiquitin carboxyl-terminal hydrolase 44 OS=Mus musculus GN=Usp44 PE=2 SV=3 | 407 | 479 | 2.0E-06 |
| sp|Q6P9L4|UBP49_MOUSE | Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49 PE=2 SV=1 | 407 | 502 | 2.0E-06 |
| sp|Q54QE6|SIR2A_DICDI | NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum GN=sir2A PE=2 SV=1 | 407 | 466 | 2.0E-06 |
| sp|Q70CQ1|UBP49_HUMAN | Ubiquitin carboxyl-terminal hydrolase 49 OS=Homo sapiens GN=USP49 PE=1 SV=1 | 407 | 491 | 2.0E-06 |
| sp|Q91W36|UBP3_MOUSE | Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3 PE=2 SV=1 | 394 | 441 | 5.0E-06 |
| sp|Q9Y6I4|UBP3_HUMAN | Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3 PE=1 SV=2 | 394 | 441 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0046914 | transition metal ion binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|6557 MVTPRYYYHLQFDLYPTPNPESEGPSKERAGGIWLPPPGASAFDRLPSHPTRERAIRDDRRERGGEAREERGLGR ERELQSESRSVDESRILQPSVIDCGSRRSDEEPRRRRRTLSSPTAATQTATIRDWRFGRVSIDTADPITMSPTET GKAAPPLGPSFGGASATKAEWLPLDTKHTELGWGVVRFYRDGDEVPTSADDDDESGDGDCCVLCIPAVPAYMSPG DFMGFVGDRWMGDISHCRMVMTSSMNRYLVLLRFREGERARLWKREFDGKVFNSIESRVCHVVMVKSITFSRNHH PVATAPSSSSSSAAVVSSSLKPFPPPTPNLIELPTCPVCLERMDETNGLMTIPCSHVFHCNCLQNWRGAGCPVCR FTNASSQAGAGVGDDGDDPNSRSFGAPVSNLCSVCDCADDLWICLICGHVGCGRYKGGHAKDHWKDTAHCFALEL ETQHVWDYAGDVWVHRLIRDKGDGKVVELPGRGSPHDGQQQQQQHEDQDVVPRAKLENIGLEYTHLITSQLESQR AYYEDMISKAADKAAASAASAEASAAQTVHLTARLSLLEERHEALQTTTLPQLERDVERQRSKAERAEKLARDLS RSLQEEKKKGEEGEEEMREEEIVL* |
| Coding | >Ophun1|6557 ATGGTAACTCCCCGTTACTACTATCACCTCCAGTTCGATCTCTATCCTACACCGAATCCCGAGAGCGAGGGGCCG TCGAAAGAGCGGGCCGGCGGCATCTGGCTGCCGCCGCCGGGAGCCAGCGCCTTTGATCGTCTGCCGTCACATCCG ACGCGCGAGCGGGCGATCCGCGACGATAGGAGAGAGAGGGGAGGAGAGGCCCGGGAGGAGAGGGGACTCGGGAGA GAGAGAGAGTTACAGAGCGAGAGCAGATCGGTCGACGAGAGCCGTATCCTACAACCGAGCGTCATCGACTGCGGA AGCAGACGCAGCGACGAGGAACCACGCAGACGGCGCAGGACGCTATCGAGCCCAACAGCTGCGACACAGACGGCT ACGATTCGAGACTGGCGCTTCGGAAGAGTGAGCATCGACACAGCCGATCCCATCACCATGTCCCCTACCGAGACG GGCAAGGCAGCGCCTCCGCTGGGCCCATCCTTTGGCGGCGCCTCTGCCACTAAGGCTGAGTGGCTACCGCTGGAC ACGAAACATACAGAGCTGGGATGGGGCGTCGTCCGCTTCTACCGCGATGGCGACGAGGTGCCTACTTCGGCTGAC GACGACGACGAGTCGGGCGATGGGGACTGCTGTGTGCTCTGCATTCCCGCTGTGCCGGCGTACATGTCGCCGGGG GACTTTATGGGCTTCGTTGGGGATCGGTGGATGGGCGATATTAGCCACTGTCGGATGGTTATGACGTCGAGCATG AATCGGTATTTGGTCTTGTTGAGGTTTCGGGAGGGTGAGAGGGCGAGGCTTTGGAAGCGGGAGTTTGATGGCAAG GTGTTTAACTCGATCGAGTCTCGAGTCTGTCACGTTGTTATGGTCAAGTCGATTACCTTTTCACGCAACCATCAT CCCGTGGCGACGGCACCATCATCGTCGTCTTCGTCAGCCGCCGTCGTCTCCAGCAGCCTCAAGCCCTTCCCACCA CCGACGCCCAACCTCATCGAGCTGCCTACCTGCCCCGTCTGCCTGGAGAGAATGGACGAAACCAACGGGCTGATG ACGATACCGTGCTCGCACGTCTTTCACTGCAACTGTCTTCAGAACTGGCGCGGAGCCGGCTGTCCCGTCTGCCGC TTTACAAACGCCTCGTCCCAGGCGGGCGCTGGCGTTGGCGATGACGGCGATGATCCTAACTCGCGGTCGTTTGGG GCTCCCGTTTCGAATCTCTGCAGTGTTTGCGACTGTGCCGACGATCTTTGGATCTGTCTTATTTGCGGGCACGTT GGTTGTGGGCGGTATAAGGGTGGGCATGCGAAGGATCATTGGAAGGATACGGCTCATTGCTTTGCGCTGGAGCTT GAGACGCAGCATGTCTGGGATTATGCTGGTGATGTCTGGGTGCATCGGTTGATCCGTGACAAGGGGGATGGCAAG GTGGTTGAGCTGCCGGGGAGAGGGAGTCCCCATGACGGACAGCAACAACAGCAGCAACACGAAGACCAAGACGTC GTGCCGCGGGCCAAGCTGGAGAACATTGGGCTCGAGTACACGCATCTGATTACCAGTCAGCTGGAGTCACAGCGA GCCTACTACGAAGACATGATCAGCAAGGCAGCCGACAAGGCCGCCGCCTCAGCAGCCTCCGCCGAAGCCAGCGCA GCGCAAACAGTCCATCTAACCGCCCGCCTCTCCCTCCTAGAAGAGCGCCACGAAGCCCTCCAGACCACAACGCTC CCCCAACTGGAGCGCGACGTGGAGAGACAGCGCAGCAAAGCAGAGCGGGCGGAGAAGCTGGCGCGCGATCTGAGC CGTTCGCTGCAGGAGGAGAAGAAGAAGGGGGAGGAGGGGGAGGAGGAGATGAGGGAGGAGGAGATTGTTCTCTGA |
| Transcript | >Ophun1|6557 ATGGTAACTCCCCGTTACTACTATCACCTCCAGTTCGATCTCTATCCTACACCGAATCCCGAGAGCGAGGGGCCG TCGAAAGAGCGGGCCGGCGGCATCTGGCTGCCGCCGCCGGGAGCCAGCGCCTTTGATCGTCTGCCGTCACATCCG ACGCGCGAGCGGGCGATCCGCGACGATAGGAGAGAGAGGGGAGGAGAGGCCCGGGAGGAGAGGGGACTCGGGAGA GAGAGAGAGTTACAGAGCGAGAGCAGATCGGTCGACGAGAGCCGTATCCTACAACCGAGCGTCATCGACTGCGGA AGCAGACGCAGCGACGAGGAACCACGCAGACGGCGCAGGACGCTATCGAGCCCAACAGCTGCGACACAGACGGCT ACGATTCGAGACTGGCGCTTCGGAAGAGTGAGCATCGACACAGCCGATCCCATCACCATGTCCCCTACCGAGACG GGCAAGGCAGCGCCTCCGCTGGGCCCATCCTTTGGCGGCGCCTCTGCCACTAAGGCTGAGTGGCTACCGCTGGAC ACGAAACATACAGAGCTGGGATGGGGCGTCGTCCGCTTCTACCGCGATGGCGACGAGGTGCCTACTTCGGCTGAC GACGACGACGAGTCGGGCGATGGGGACTGCTGTGTGCTCTGCATTCCCGCTGTGCCGGCGTACATGTCGCCGGGG GACTTTATGGGCTTCGTTGGGGATCGGTGGATGGGCGATATTAGCCACTGTCGGATGGTTATGACGTCGAGCATG AATCGGTATTTGGTCTTGTTGAGGTTTCGGGAGGGTGAGAGGGCGAGGCTTTGGAAGCGGGAGTTTGATGGCAAG GTGTTTAACTCGATCGAGTCTCGAGTCTGTCACGTTGTTATGGTCAAGTCGATTACCTTTTCACGCAACCATCAT CCCGTGGCGACGGCACCATCATCGTCGTCTTCGTCAGCCGCCGTCGTCTCCAGCAGCCTCAAGCCCTTCCCACCA CCGACGCCCAACCTCATCGAGCTGCCTACCTGCCCCGTCTGCCTGGAGAGAATGGACGAAACCAACGGGCTGATG ACGATACCGTGCTCGCACGTCTTTCACTGCAACTGTCTTCAGAACTGGCGCGGAGCCGGCTGTCCCGTCTGCCGC TTTACAAACGCCTCGTCCCAGGCGGGCGCTGGCGTTGGCGATGACGGCGATGATCCTAACTCGCGGTCGTTTGGG GCTCCCGTTTCGAATCTCTGCAGTGTTTGCGACTGTGCCGACGATCTTTGGATCTGTCTTATTTGCGGGCACGTT GGTTGTGGGCGGTATAAGGGTGGGCATGCGAAGGATCATTGGAAGGATACGGCTCATTGCTTTGCGCTGGAGCTT GAGACGCAGCATGTCTGGGATTATGCTGGTGATGTCTGGGTGCATCGGTTGATCCGTGACAAGGGGGATGGCAAG GTGGTTGAGCTGCCGGGGAGAGGGAGTCCCCATGACGGACAGCAACAACAGCAGCAACACGAAGACCAAGACGTC GTGCCGCGGGCCAAGCTGGAGAACATTGGGCTCGAGTACACGCATCTGATTACCAGTCAGCTGGAGTCACAGCGA GCCTACTACGAAGACATGATCAGCAAGGCAGCCGACAAGGCCGCCGCCTCAGCAGCCTCCGCCGAAGCCAGCGCA GCGCAAACAGTCCATCTAACCGCCCGCCTCTCCCTCCTAGAAGAGCGCCACGAAGCCCTCCAGACCACAACGCTC CCCCAACTGGAGCGCGACGTGGAGAGACAGCGCAGCAAAGCAGAGCGGGCGGAGAAGCTGGCGCGCGATCTGAGC CGTTCGCTGCAGGAGGAGAAGAAGAAGGGGGAGGAGGGGGAGGAGGAGATGAGGGAGGAGGAGATTGTTCTCTGA |
| Gene | >Ophun1|6557 ATGGTAACTCCCCGTTACTACTATCACCTCCAGTTCGATCTCTATCCTACACCGAATCCCGAGAGCGAGGGGCCG TCGAAAGAGCGGGCCGGCGGCATCTGGCTGCCGCCGCCGGGAGCCAGCGCCTTTGATCGTCTGCCGTCACATCCG ACGCGCGAGCGGGCGATCCGCGACGATAGGAGAGAGAGGGGAGGAGAGGCCCGGGAGGAGAGGGGACTCGGGAGA GAGAGAGAGTTACAGAGCGAGAGCAGATCGGTCGACGAGAGCCGTATCCTACAACCGAGCGTCATCGACTGCGGA AGCAGACGCAGCGACGAGGAACCACGCAGACGGCGCAGGACGCTATCGAGCCCAACAGCTGCGACACAGACGGCT ACGATTCGAGACTGGCGCTTCGGAAGAGTGAGCATCGACACAGCCGATCCCATCACCATGTCCCCTACCGAGACG GGCAAGGCAGCGCCTCCGCTGGGCCCATCCTTTGGCGGCGCCTCTGCCACTAAGGCTGAGTGGCTACCGCTGGAC ACGAAACATACAGAGCTGGGATGGGGCGTCGTCCGCTTCTACCGCGATGGCGACGAGGTGCCTACTTCGGCTGAC GACGACGACGAGTCGGGCGATGGGGACTGCTGTGTGCTCTGCATTCCCGCTGTGCCGGCGTACATGTCGCCGGGG GACTTTATGGGCTTCGTTGGGGATCGGTGGATGGGCGATATTAGCCACTGTCGGATGGTTATGACGTCGAGCATG AATCGGTATTTGGTCTTGTTGAGGTTTCGGGAGGGTGAGAGGGCGAGGCTTTGGAAGCGGGAGTTTGATGGCAAG GTGTTTAACTCGATCGAGGTGAGTTGCCACTTGATCCCATCACCGTCGCTTGGTTACCTATGCTGACGGGCAAAG TCTCGAGTCTGTCACGTTGTTATGGTCAAGTCGATTACCTTTTCACGCAACCATCATCCCGTGGCGACGGCACCA TCATCGTCGTCTTCGTCAGCCGCCGTCGTCTCCAGCAGCCTCAAGCCCTTCCCACCACCGACGCCCAACCTCATC GAGCTGCCTACCTGCCCCGTCTGCCTGGAGAGAATGGACGAAACCAACGGGCTGATGACGATACCGTGCTCGCAC GTCTTTCACTGCAACTGTCTTCAGAACTGGCGCGGAGCCGGCTGTCCCGTCTGCCGCTTTACAAACGCCTCGTCC CAGGCGGGCGCTGGCGTTGGCGATGACGGCGATGATCCTAACTCGCGGTCGTTTGGGGCTCCCGTTTCGAATCTC TGCAGTGTTTGCGACTGTGCCGACGATCTTTGGATCTGTCTTATTTGCGGGCACGTTGGTTGTGGGCGGTATAAG GGTGGGCATGCGAAGGATCATTGGAAGGATACGGCTCATTGCTTTGCGCTGGAGCTTGAGACGCAGCATGTCTGG GATTATGCTGGTGATGTCTGGGTGCATCGGTTGATCCGTGACAAGGGGGATGGCAAGGTGGTTGAGCTGCCGGGG AGAGGGAGTCCCCATGACGGACAGCAACAACAGCAGCAACACGAAGACCAAGACGTCGTGCCGCGGGCCAAGCTG GAGAACATTGGGCTCGAGTACACGCATCTGATTACCAGTCAGCTGGAGTCACAGCGAGCCTACTACGAAGACATG ATCAGCAAGGCAGCCGACAAGGCCGCCGCCTCAGCAGCCTCCGCCGAAGCCAGCGCAGCGCAAACAGTCCATCTA ACCGCCCGCCTCTCCCTCCTAGAAGAGCGCCACGAAGCCCTCCAGACCACAACGCTCCCCCAACTGGAGCGCGAC GTGGAGAGACAGCGCAGCAAAGCAGAGCGGGCGGAGAAGCTGGCGCGCGATCTGAGCCGTTCGCTGCAGGAGGAG AAGAAGGTGAATGAGGGGCTGATGCAGCGGATTGCGCATCTCGAGGGAGGGCTTGCGGCTGCCAAGGCTGAGGTT GAGAAGCTGGGGGGGGAGAAGGGGGAGTTGGAGGAGTTGAATCGCGATTTGTCGGCTTTTATTTCGGGGGCGGAG AGGTTGAGGGAGTTGGAGAGGGAGGGGGTGGTTGGGGAGGGGGAGGTTGTTGAGGGGACGGTTGGGGTTGGGGGC AGAAGGGGGAGGAGGGGGAGGAGGAGATGAGGGAGGAGGAGATTGTTCTCTGA |