© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|6539 |
| Gene name | |
| Location | Contig_72:19763..21263 |
| Strand | - |
| Gene length (bp) | 1500 |
| Transcript length (bp) | 1500 |
| Coding sequence length (bp) | 1500 |
| Protein length (aa) | 500 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08491 | SE | Squalene epoxidase | 6.1E-82 | 193 | 454 |
| PF01266 | DAO | FAD dependent oxidoreductase | 1.6E-07 | 21 | 51 |
| PF01494 | FAD_binding_3 | FAD binding domain | 3.6E-07 | 20 | 357 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 3.6E-05 | 24 | 51 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q92206|ERG1_CANAL | Squalene monooxygenase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ERG1 PE=3 SV=1 | 21 | 499 | 3.0E-106 |
| sp|Q9C1W3|ERG1_SCHPO | Probable squalene monooxygenase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg1 PE=3 SV=1 | 31 | 497 | 1.0E-105 |
| sp|O13306|ERG1_CANGA | Squalene monooxygenase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG1 PE=3 SV=2 | 21 | 497 | 1.0E-95 |
| sp|P52019|ERG1_MOUSE | Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1 | 21 | 497 | 9.0E-91 |
| sp|P32476|ERG1_YEAST | Squalene monooxygenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG1 PE=1 SV=2 | 21 | 497 | 4.0E-89 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q92206|ERG1_CANAL | Squalene monooxygenase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ERG1 PE=3 SV=1 | 21 | 499 | 3.0E-106 |
| sp|Q9C1W3|ERG1_SCHPO | Probable squalene monooxygenase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg1 PE=3 SV=1 | 31 | 497 | 1.0E-105 |
| sp|O13306|ERG1_CANGA | Squalene monooxygenase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG1 PE=3 SV=2 | 21 | 497 | 1.0E-95 |
| sp|P52019|ERG1_MOUSE | Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1 | 21 | 497 | 9.0E-91 |
| sp|P32476|ERG1_YEAST | Squalene monooxygenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG1 PE=1 SV=2 | 21 | 497 | 4.0E-89 |
| sp|Q14534|ERG1_HUMAN | Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=1 SV=3 | 17 | 497 | 8.0E-89 |
| sp|P52020|ERG1_RAT | Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1 | 19 | 497 | 6.0E-88 |
| sp|Q75F69|ERG1_ASHGO | Squalene monooxygenase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERG1 PE=3 SV=1 | 1 | 499 | 5.0E-86 |
| sp|O81000|ERG15_ARATH | Squalene epoxidase 2, mitochondrial OS=Arabidopsis thaliana GN=SQE2 PE=1 SV=1 | 9 | 453 | 3.0E-84 |
| sp|Q9SM02|ERG14_ARATH | Squalene epoxidase 1 OS=Arabidopsis thaliana GN=SQE1 PE=1 SV=1 | 20 | 499 | 4.0E-82 |
| sp|O48651|ERG1_PANGI | Squalene monooxygenase OS=Panax ginseng PE=2 SV=1 | 19 | 499 | 2.0E-81 |
| sp|Q8VYH2|ERG16_ARATH | Squalene epoxidase 3 OS=Arabidopsis thaliana GN=SQE3 PE=1 SV=1 | 34 | 453 | 1.0E-80 |
| sp|O65727|ERG11_BRANA | Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1 | 8 | 453 | 9.0E-62 |
| sp|O65404|ERG11_ARATH | Squalene epoxidase 5 OS=Arabidopsis thaliana GN=SQE5 PE=2 SV=2 | 4 | 496 | 1.0E-60 |
| sp|O65726|ERG12_BRANA | Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1 | 10 | 491 | 6.0E-58 |
| sp|O65402|ERG12_ARATH | Squalene epoxidase 6 OS=Arabidopsis thaliana GN=SQE6 PE=2 SV=1 | 4 | 496 | 9.0E-56 |
| sp|O65403|ERG13_ARATH | Squalene epoxidase 4 OS=Arabidopsis thaliana GN=SQE4 PE=2 SV=1 | 6 | 453 | 3.0E-50 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0071949 | FAD binding | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0004506 | squalene monooxygenase activity | Yes |
| GO:0005575 | cellular_component | No |
| GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043167 | ion binding | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0004497 | monooxygenase activity | No |
| GO:0003674 | molecular_function | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0043168 | anion binding | No |
| GO:0005488 | binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 440 | 462 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2843 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|6539 MSPATVPASARLRREQHHEADIVVVGAGVFGCAMAFALANQGRSVLLLERRMAEPDRIVGELLQPGGMAALRRLG LGHCVDGIDGIPCHGYHIRYNGLPVDIPYPPIEDDGDIACKWSGASTEAEGKRPQGRGFHHGRFIMKLRQSCQTH DNITVVETEVTKLVRGQHSPEILGVESLTTSEKGTRQNDYFFGKLTIIADGYDSKFRRQVVAEKPRVRSKFYALE LIDCPLPRDNFGLVVIGEAYPMVLYRIGSRETRILIDVPVGLPAASPAAGGVRGYIRDVAIPALPPACRPSAELA LSDGKIPRSMPNSWLPASPQSCQGLVLAGDAFNMRHALTGGGMTVALHDALLLAHLLHPDQLSDSLDNTRAVSSA VEAFYWRRKNCSSIINVLAQALYALFAAEDRQLRALQRGCFEYFRRGIIDGPCALLGGILHQPSVLAYHFFSVAF LAIWLHGLAVVGEGPWAPLRAPLVVLDAVLILARASQVFLPLIWREVFR* |
| Coding | >Ophun1|6539 ATGTCTCCCGCCACGGTCCCCGCCTCGGCTCGGCTCCGGCGCGAGCAGCACCACGAAGCCGACATCGTCGTCGTC GGAGCCGGCGTCTTCGGCTGCGCCATGGCCTTTGCGCTCGCCAATCAGGGCCGTTCCGTCCTCTTGCTTGAGCGG CGGATGGCGGAGCCGGATCGGATTGTTGGCGAGTTGCTTCAGCCGGGTGGAATGGCTGCTCTTCGTCGGCTGGGG CTTGGTCACTGTGTTGATGGCATCGATGGGATTCCCTGTCATGGCTATCACATTCGTTATAACGGGTTGCCGGTT GATATTCCGTATCCGCCGATTGAGGATGATGGGGATATCGCTTGCAAGTGGTCTGGTGCTTCGACCGAGGCGGAA GGGAAGAGGCCTCAGGGTCGGGGCTTTCACCACGGTCGATTCATCATGAAGCTACGACAATCATGCCAAACACAC GACAACATCACCGTCGTCGAAACCGAAGTAACAAAGCTCGTCCGCGGCCAGCACTCCCCCGAGATCCTCGGCGTC GAATCCCTCACCACCTCTGAAAAAGGCACCCGTCAAAACGACTACTTCTTCGGCAAGCTCACCATCATCGCCGAC GGCTACGACTCCAAGTTTCGACGGCAGGTCGTTGCCGAGAAGCCGCGTGTCCGCAGCAAGTTCTACGCCCTTGAG CTCATCGACTGTCCCCTCCCCCGCGATAACTTTGGCCTCGTCGTTATCGGAGAGGCTTACCCCATGGTCCTCTAC CGCATCGGCTCCCGCGAGACGAGGATTCTCATCGACGTGCCTGTTGGTCTCCCCGCTGCGTCGCCGGCTGCTGGT GGTGTTCGCGGTTATATCCGGGACGTGGCCATCCCTGCCTTGCCGCCCGCCTGTCGTCCCTCTGCCGAGCTGGCC TTGTCGGACGGCAAGATACCGCGCAGCATGCCGAATAGCTGGCTTCCTGCTTCGCCGCAGTCTTGCCAGGGGCTC GTCCTCGCTGGCGATGCCTTTAATATGCGGCACGCGCTTACGGGCGGTGGCATGACGGTTGCGCTGCACGACGCG CTCCTCCTCGCCCACCTCCTCCACCCAGATCAACTCAGCGACAGCCTCGACAACACACGAGCCGTATCCTCAGCC GTCGAAGCCTTCTACTGGCGCCGCAAGAACTGCTCCTCCATAATCAACGTCCTCGCCCAAGCCCTCTACGCCCTC TTCGCCGCCGAGGACCGCCAGCTGCGCGCCCTCCAACGCGGCTGCTTCGAGTACTTCCGCCGCGGCATCATCGAC GGGCCCTGCGCCCTCCTCGGCGGAATCCTCCATCAGCCTTCCGTCCTGGCCTACCATTTCTTCTCCGTGGCCTTC CTGGCCATCTGGCTGCATGGCTTGGCCGTCGTGGGGGAAGGGCCGTGGGCGCCGTTGAGGGCGCCGCTTGTGGTG CTGGATGCGGTGCTTATCCTTGCGAGGGCGAGTCAGGTGTTTTTACCGCTGATTTGGCGCGAGGTGTTTCGTTGA |
| Transcript | >Ophun1|6539 ATGTCTCCCGCCACGGTCCCCGCCTCGGCTCGGCTCCGGCGCGAGCAGCACCACGAAGCCGACATCGTCGTCGTC GGAGCCGGCGTCTTCGGCTGCGCCATGGCCTTTGCGCTCGCCAATCAGGGCCGTTCCGTCCTCTTGCTTGAGCGG CGGATGGCGGAGCCGGATCGGATTGTTGGCGAGTTGCTTCAGCCGGGTGGAATGGCTGCTCTTCGTCGGCTGGGG CTTGGTCACTGTGTTGATGGCATCGATGGGATTCCCTGTCATGGCTATCACATTCGTTATAACGGGTTGCCGGTT GATATTCCGTATCCGCCGATTGAGGATGATGGGGATATCGCTTGCAAGTGGTCTGGTGCTTCGACCGAGGCGGAA GGGAAGAGGCCTCAGGGTCGGGGCTTTCACCACGGTCGATTCATCATGAAGCTACGACAATCATGCCAAACACAC GACAACATCACCGTCGTCGAAACCGAAGTAACAAAGCTCGTCCGCGGCCAGCACTCCCCCGAGATCCTCGGCGTC GAATCCCTCACCACCTCTGAAAAAGGCACCCGTCAAAACGACTACTTCTTCGGCAAGCTCACCATCATCGCCGAC GGCTACGACTCCAAGTTTCGACGGCAGGTCGTTGCCGAGAAGCCGCGTGTCCGCAGCAAGTTCTACGCCCTTGAG CTCATCGACTGTCCCCTCCCCCGCGATAACTTTGGCCTCGTCGTTATCGGAGAGGCTTACCCCATGGTCCTCTAC CGCATCGGCTCCCGCGAGACGAGGATTCTCATCGACGTGCCTGTTGGTCTCCCCGCTGCGTCGCCGGCTGCTGGT GGTGTTCGCGGTTATATCCGGGACGTGGCCATCCCTGCCTTGCCGCCCGCCTGTCGTCCCTCTGCCGAGCTGGCC TTGTCGGACGGCAAGATACCGCGCAGCATGCCGAATAGCTGGCTTCCTGCTTCGCCGCAGTCTTGCCAGGGGCTC GTCCTCGCTGGCGATGCCTTTAATATGCGGCACGCGCTTACGGGCGGTGGCATGACGGTTGCGCTGCACGACGCG CTCCTCCTCGCCCACCTCCTCCACCCAGATCAACTCAGCGACAGCCTCGACAACACACGAGCCGTATCCTCAGCC GTCGAAGCCTTCTACTGGCGCCGCAAGAACTGCTCCTCCATAATCAACGTCCTCGCCCAAGCCCTCTACGCCCTC TTCGCCGCCGAGGACCGCCAGCTGCGCGCCCTCCAACGCGGCTGCTTCGAGTACTTCCGCCGCGGCATCATCGAC GGGCCCTGCGCCCTCCTCGGCGGAATCCTCCATCAGCCTTCCGTCCTGGCCTACCATTTCTTCTCCGTGGCCTTC CTGGCCATCTGGCTGCATGGCTTGGCCGTCGTGGGGGAAGGGCCGTGGGCGCCGTTGAGGGCGCCGCTTGTGGTG CTGGATGCGGTGCTTATCCTTGCGAGGGCGAGTCAGGTGTTTTTACCGCTGATTTGGCGCGAGGTGTTTCGTTGA |
| Gene | >Ophun1|6539 ATGTCTCCCGCCACGGTCCCCGCCTCGGCTCGGCTCCGGCGCGAGCAGCACCACGAAGCCGACATCGTCGTCGTC GGAGCCGGCGTCTTCGGCTGCGCCATGGCCTTTGCGCTCGCCAATCAGGGCCGTTCCGTCCTCTTGCTTGAGCGG CGGATGGCGGAGCCGGATCGGATTGTTGGCGAGTTGCTTCAGCCGGGTGGAATGGCTGCTCTTCGTCGGCTGGGG CTTGGTCACTGTGTTGATGGCATCGATGGGATTCCCTGTCATGGCTATCACATTCGTTATAACGGGTTGCCGGTT GATATTCCGTATCCGCCGATTGAGGATGATGGGGATATCGCTTGCAAGTGGTCTGGTGCTTCGACCGAGGCGGAA GGGAAGAGGCCTCAGGGTCGGGGCTTTCACCACGGTCGATTCATCATGAAGCTACGACAATCATGCCAAACACAC GACAACATCACCGTCGTCGAAACCGAAGTAACAAAGCTCGTCCGCGGCCAGCACTCCCCCGAGATCCTCGGCGTC GAATCCCTCACCACCTCTGAAAAAGGCACCCGTCAAAACGACTACTTCTTCGGCAAGCTCACCATCATCGCCGAC GGCTACGACTCCAAGTTTCGACGGCAGGTCGTTGCCGAGAAGCCGCGTGTCCGCAGCAAGTTCTACGCCCTTGAG CTCATCGACTGTCCCCTCCCCCGCGATAACTTTGGCCTCGTCGTTATCGGAGAGGCTTACCCCATGGTCCTCTAC CGCATCGGCTCCCGCGAGACGAGGATTCTCATCGACGTGCCTGTTGGTCTCCCCGCTGCGTCGCCGGCTGCTGGT GGTGTTCGCGGTTATATCCGGGACGTGGCCATCCCTGCCTTGCCGCCCGCCTGTCGTCCCTCTGCCGAGCTGGCC TTGTCGGACGGCAAGATACCGCGCAGCATGCCGAATAGCTGGCTTCCTGCTTCGCCGCAGTCTTGCCAGGGGCTC GTCCTCGCTGGCGATGCCTTTAATATGCGGCACGCGCTTACGGGCGGTGGCATGACGGTTGCGCTGCACGACGCG CTCCTCCTCGCCCACCTCCTCCACCCAGATCAACTCAGCGACAGCCTCGACAACACACGAGCCGTATCCTCAGCC GTCGAAGCCTTCTACTGGCGCCGCAAGAACTGCTCCTCCATAATCAACGTCCTCGCCCAAGCCCTCTACGCCCTC TTCGCCGCCGAGGACCGCCAGCTGCGCGCCCTCCAACGCGGCTGCTTCGAGTACTTCCGCCGCGGCATCATCGAC GGGCCCTGCGCCCTCCTCGGCGGAATCCTCCATCAGCCTTCCGTCCTGGCCTACCATTTCTTCTCCGTGGCCTTC CTGGCCATCTGGCTGCATGGCTTGGCCGTCGTGGGGGAAGGGCCGTGGGCGCCGTTGAGGGCGCCGCTTGTGGTG CTGGATGCGGTGCTTATCCTTGCGAGGGCGAGTCAGGTGTTTTTACCGCTGATTTGGCGCGAGGTGTTTCGTTGA |