Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|646
Gene name
LocationContig_120:2782..3555
Strand+
Gene length (bp)773
Transcript length (bp)714
Coding sequence length (bp)714
Protein length (aa) 238

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09177 Syntaxin-6_N Syntaxin 6, N-terminal 1.5E-26 10 108
PF05739 SNARE SNARE domain 2.8E-06 181 233

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9HGN3|TLG1_SCHPO t-SNARE affecting a late Golgi compartment protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg1 PE=3 SV=1 10 219 6.0E-23
sp|O60499|STX10_HUMAN Syntaxin-10 OS=Homo sapiens GN=STX10 PE=1 SV=1 10 223 5.0E-17
sp|Q5R6Q2|STX6_PONAB Syntaxin-6 OS=Pongo abelii GN=STX6 PE=2 SV=1 10 221 9.0E-17
sp|O43752|STX6_HUMAN Syntaxin-6 OS=Homo sapiens GN=STX6 PE=1 SV=1 10 221 9.0E-17
sp|Q03322|TLG1_YEAST T-SNARE affecting a late Golgi compartment protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG1 PE=1 SV=1 10 221 5.0E-16
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9HGN3|TLG1_SCHPO t-SNARE affecting a late Golgi compartment protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg1 PE=3 SV=1 10 219 6.0E-23
sp|O60499|STX10_HUMAN Syntaxin-10 OS=Homo sapiens GN=STX10 PE=1 SV=1 10 223 5.0E-17
sp|Q5R6Q2|STX6_PONAB Syntaxin-6 OS=Pongo abelii GN=STX6 PE=2 SV=1 10 221 9.0E-17
sp|O43752|STX6_HUMAN Syntaxin-6 OS=Homo sapiens GN=STX6 PE=1 SV=1 10 221 9.0E-17
sp|Q03322|TLG1_YEAST T-SNARE affecting a late Golgi compartment protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG1 PE=1 SV=1 10 221 5.0E-16
sp|Q63635|STX6_RAT Syntaxin-6 OS=Rattus norvegicus GN=Stx6 PE=1 SV=1 10 222 5.0E-16
sp|Q9JKK1|STX6_MOUSE Syntaxin-6 OS=Mus musculus GN=Stx6 PE=1 SV=1 10 221 1.0E-15
sp|Q5ZL19|STX6_CHICK Syntaxin-6 OS=Gallus gallus GN=STX6 PE=2 SV=1 10 219 8.0E-14
sp|Q946Y7|SYP61_ARATH Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1 10 237 7.0E-09
[Show less]

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0048193 Golgi vesicle transport Yes
GO:0051179 localization No
GO:0016192 vesicle-mediated transport No
GO:0051234 establishment of localization No
GO:0005575 cellular_component No
GO:0006810 transport No
GO:0110165 cellular anatomical entity No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 52 0.45

Transmembrane Domains

Domain # Start End Length
1 214 236 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|646
MMSSTTEEADPFIQVQQDVLAQLSSTRPLFASYLRIRSLSSTASSPELASARKDLESALRTLAEDLSDLEASVAA
VESKPSQYGLSADEVARRKRVVQEASGELDDMREELSRNGGFASSSAAADSSPADDDEDFAAGFEQQQQVQMMRD
QDQHLDGVFQTVGNIRRQADDMGRELEEQHEMLELVDQAADRVGSRLQNGMQKLQHVIRNNEDRWSSCCISVLIF
VLILLLFLLLIL*
Coding >Ophun1|646
ATGATGTCCTCGACCACCGAGGAGGCCGATCCCTTCATCCAGGTCCAGCAAGATGTCCTCGCGCAACTATCGTCG
ACAAGGCCCCTCTTCGCCTCATACCTCCGCATCCGCTCCCTCTCATCCACAGCGTCCTCTCCCGAACTCGCTTCA
GCACGGAAAGATCTCGAGAGTGCGCTGAGGACGCTAGCCGAGGACCTCTCCGACCTTGAAGCTTCCGTCGCGGCC
GTCGAGTCCAAGCCTTCGCAATATGGTCTCTCCGCAGATGAGGTTGCGCGCCGCAAGCGCGTCGTTCAGGAAGCT
AGCGGAGAGTTAGACGACATGCGCGAGGAGCTCTCTCGGAATGGCGGCTTCGCTTCATCCTCCGCTGCTGCAGAC
TCTTCCCCTGCCGATGACGATGAAGACTTTGCCGCGGGCTTTGAGCAGCAACAACAGGTGCAGATGATGCGCGAT
CAGGATCAGCATCTTGACGGTGTGTTTCAAACGGTCGGTAATATCCGTCGTCAGGCGGATGATATGGGTCGCGAG
CTGGAGGAGCAGCACGAGATGCTGGAGCTCGTCGACCAGGCTGCCGATCGCGTCGGCTCGAGGCTGCAGAACGGC
ATGCAGAAGCTGCAACACGTCATACGCAACAATGAGGATCGCTGGAGCAGCTGCTGCATTTCTGTCCTCATCTTT
GTCCTCATCTTGCTGCTCTTCCTCCTCTTGATTTTATAG
Transcript >Ophun1|646
ATGATGTCCTCGACCACCGAGGAGGCCGATCCCTTCATCCAGGTCCAGCAAGATGTCCTCGCGCAACTATCGTCG
ACAAGGCCCCTCTTCGCCTCATACCTCCGCATCCGCTCCCTCTCATCCACAGCGTCCTCTCCCGAACTCGCTTCA
GCACGGAAAGATCTCGAGAGTGCGCTGAGGACGCTAGCCGAGGACCTCTCCGACCTTGAAGCTTCCGTCGCGGCC
GTCGAGTCCAAGCCTTCGCAATATGGTCTCTCCGCAGATGAGGTTGCGCGCCGCAAGCGCGTCGTTCAGGAAGCT
AGCGGAGAGTTAGACGACATGCGCGAGGAGCTCTCTCGGAATGGCGGCTTCGCTTCATCCTCCGCTGCTGCAGAC
TCTTCCCCTGCCGATGACGATGAAGACTTTGCCGCGGGCTTTGAGCAGCAACAACAGGTGCAGATGATGCGCGAT
CAGGATCAGCATCTTGACGGTGTGTTTCAAACGGTCGGTAATATCCGTCGTCAGGCGGATGATATGGGTCGCGAG
CTGGAGGAGCAGCACGAGATGCTGGAGCTCGTCGACCAGGCTGCCGATCGCGTCGGCTCGAGGCTGCAGAACGGC
ATGCAGAAGCTGCAACACGTCATACGCAACAATGAGGATCGCTGGAGCAGCTGCTGCATTTCTGTCCTCATCTTT
GTCCTCATCTTGCTGCTCTTCCTCCTCTTGATTTTATAG
Gene >Ophun1|646
ATGATGTCCTCGACCACCGAGGAGGCCGATCCCTTCATCCAGGTCCAGCAGTACGCAGCGAATTCCACCTGCCTG
AACCACACGTCGTCATCAACTTACGCTCCTTCAGAGATGTCCTCGCGCAACTATCGTCGACAAGGCCCCTCTTCG
CCTCATACCTCCGCATCCGCTCCCTCTCATCCACAGCGTCCTCTCCCGAACTCGCTTCAGCACGGAAAGATCTCG
AGAGTGCGCTGAGGACGCTAGCCGAGGACCTCTCCGACCTTGAAGCTTCCGTCGCGGCCGTCGAGTCCAAGCCTT
CGCAATATGGTCTCTCCGCAGATGAGGTTGCGCGCCGCAAGCGCGTCGTTCAGGAAGCTAGCGGAGAGTTAGACG
ACATGCGCGAGGAGCTCTCTCGGAATGGCGGCTTCGCTTCATCCTCCGCTGCTGCAGACTCTTCCCCTGCCGATG
ACGATGAAGACTTTGCCGCGGGCTTTGAGCAGCAACAACAGGTGCAGATGATGCGCGATCAGGATCAGCATCTTG
ACGGTGTGTTTCAAACGGTCGGTAATATCCGTCGTCAGGCGGATGATATGGGTCGCGAGCTGGAGGAGCAGCACG
AGATGCTGGAGCTCGTCGACCAGGCTGCCGATCGCGTCGGCTCGAGGCTGCAGAACGGCATGCAGAAGCTGCAAC
ACGTCATACGCAACAATGAGGATCGCTGGAGCAGCTGCTGCATTTCTGTCCTCATCTTTGTCCTCATCTTGCTGC
TCTTCCTCCTCTTGATTTTATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail