© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|6294 |
| Gene name | |
| Location | Contig_68:3790..4793 |
| Strand | - |
| Gene length (bp) | 1003 |
| Transcript length (bp) | 936 |
| Coding sequence length (bp) | 936 |
| Protein length (aa) | 312 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07950 | MCP1_TM | MDM10-complementing protein 1, transmembrane domain | 3.6E-05 | 84 | 150 |
| PF07950 | MCP1_TM | MDM10-complementing protein 1, transmembrane domain | 2.1E-30 | 193 | 292 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 76 | 98 | 22 |
| 2 | 118 | 140 | 22 |
| 3 | 174 | 196 | 22 |
| 4 | 229 | 251 | 22 |
| 5 | 272 | 294 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|6294 MEEETPRQWQRRDSQQTLMSLLQLDPSPIESPPESPPLVPEKELPVSSGSSTTGAPGLSGNGGHGAIFYLTRLQR YSSFATALFASIHLANVSLIPLATRSVPGSETYLLMTRELYQTPLAEPVMVVLPVVAHIGAGLALRLLRRWQNMR RYGAATPAMYALHRKRTTTNKDSVRLWPPLSYVSASGYALTLLYAAHVTVNRVLPLVVEGDSANIGLAYVAHGFA RHPVLALAAYAGLIATACGHMAWGAARWLGLADGRSSKRRRMGVHAAAAGMTALWAAGGLGVVARGGAAQGWIAA AYDRMLAAVRL* |
| Coding | >Ophun1|6294 ATGGAGGAGGAGACGCCCCGTCAGTGGCAGCGCCGAGACTCACAGCAGACGCTCATGTCGCTCCTACAGCTAGAT CCGTCGCCGATCGAGTCACCGCCAGAGTCGCCGCCCCTGGTGCCCGAAAAGGAGCTGCCAGTCTCGAGCGGATCG TCGACGACCGGCGCCCCAGGCCTGAGCGGAAACGGCGGACACGGTGCTATCTTCTATCTCACGCGTCTCCAGCGC TACTCGAGCTTCGCAACCGCTCTCTTCGCCTCCATCCACCTCGCCAACGTGTCCCTGATCCCGCTCGCGACGCGC TCCGTCCCCGGCTCCGAGACTTACCTCCTCATGACGCGCGAGCTCTACCAGACGCCCTTGGCCGAACCAGTGATG GTGGTGCTCCCCGTGGTGGCGCACATAGGCGCCGGCCTGGCCCTTCGCCTGCTGCGAAGATGGCAGAATATGCGA CGTTACGGCGCCGCGACGCCCGCCATGTACGCGCTGCATCGGAAGCGGACGACGACCAACAAGGATAGCGTCAGG CTGTGGCCGCCGCTGAGCTACGTCTCGGCTTCCGGCTACGCCCTGACGTTGCTCTACGCCGCGCACGTTACCGTC AACCGCGTCCTGCCACTGGTGGTCGAGGGCGATAGCGCAAATATCGGGCTCGCCTACGTCGCTCACGGCTTCGCT CGTCACCCGGTGCTGGCACTGGCTGCCTACGCGGGGCTCATCGCCACTGCCTGCGGACACATGGCTTGGGGCGCT GCCCGCTGGCTTGGCCTCGCCGATGGCCGGTCTTCCAAACGGCGGCGGATGGGCGTCCATGCTGCTGCGGCTGGT ATGACTGCTCTCTGGGCTGCGGGTGGGTTGGGTGTCGTGGCGCGGGGAGGGGCGGCGCAGGGCTGGATTGCGGCT GCCTACGACCGGATGCTGGCTGCGGTGCGGCTGTAA |
| Transcript | >Ophun1|6294 ATGGAGGAGGAGACGCCCCGTCAGTGGCAGCGCCGAGACTCACAGCAGACGCTCATGTCGCTCCTACAGCTAGAT CCGTCGCCGATCGAGTCACCGCCAGAGTCGCCGCCCCTGGTGCCCGAAAAGGAGCTGCCAGTCTCGAGCGGATCG TCGACGACCGGCGCCCCAGGCCTGAGCGGAAACGGCGGACACGGTGCTATCTTCTATCTCACGCGTCTCCAGCGC TACTCGAGCTTCGCAACCGCTCTCTTCGCCTCCATCCACCTCGCCAACGTGTCCCTGATCCCGCTCGCGACGCGC TCCGTCCCCGGCTCCGAGACTTACCTCCTCATGACGCGCGAGCTCTACCAGACGCCCTTGGCCGAACCAGTGATG GTGGTGCTCCCCGTGGTGGCGCACATAGGCGCCGGCCTGGCCCTTCGCCTGCTGCGAAGATGGCAGAATATGCGA CGTTACGGCGCCGCGACGCCCGCCATGTACGCGCTGCATCGGAAGCGGACGACGACCAACAAGGATAGCGTCAGG CTGTGGCCGCCGCTGAGCTACGTCTCGGCTTCCGGCTACGCCCTGACGTTGCTCTACGCCGCGCACGTTACCGTC AACCGCGTCCTGCCACTGGTGGTCGAGGGCGATAGCGCAAATATCGGGCTCGCCTACGTCGCTCACGGCTTCGCT CGTCACCCGGTGCTGGCACTGGCTGCCTACGCGGGGCTCATCGCCACTGCCTGCGGACACATGGCTTGGGGCGCT GCCCGCTGGCTTGGCCTCGCCGATGGCCGGTCTTCCAAACGGCGGCGGATGGGCGTCCATGCTGCTGCGGCTGGT ATGACTGCTCTCTGGGCTGCGGGTGGGTTGGGTGTCGTGGCGCGGGGAGGGGCGGCGCAGGGCTGGATTGCGGCT GCCTACGACCGGATGCTGGCTGCGGTGCGGCTGTAA |
| Gene | >Ophun1|6294 ATGGAGGAGGAGACGCCCCGTCAGTGGCAGCGCCGAGACTCACAGCAGACGCTCATGTCGCTCCTACAGCTAGAT CCGTCGCCGATCGAGTCACCGCCAGAGTCGCCGCCCCTGGTGCCCGAAAAGGAGCTGCCAGTCTCGAGCGGATCG TCGACGACCGGCGCCCCAGGCCTGAGCGGAAACGGCGGACACGGTGCTATCTTCTATCGTGCGGCTCTCCTCTTC TCGACTTCTATAGTATCTGCGCGGAGTAACCACTGATGAGTCCTTTTCAGTCACGCGTCTCCAGCGCTACTCGAG CTTCGCAACCGCTCTCTTCGCCTCCATCCACCTCGCCAACGTGTCCCTGATCCCGCTCGCGACGCGCTCCGTCCC CGGCTCCGAGACTTACCTCCTCATGACGCGCGAGCTCTACCAGACGCCCTTGGCCGAACCAGTGATGGTGGTGCT CCCCGTGGTGGCGCACATAGGCGCCGGCCTGGCCCTTCGCCTGCTGCGAAGATGGCAGAATATGCGACGTTACGG CGCCGCGACGCCCGCCATGTACGCGCTGCATCGGAAGCGGACGACGACCAACAAGGATAGCGTCAGGCTGTGGCC GCCGCTGAGCTACGTCTCGGCTTCCGGCTACGCCCTGACGTTGCTCTACGCCGCGCACGTTACCGTCAACCGCGT CCTGCCACTGGTGGTCGAGGGCGATAGCGCAAATATCGGGCTCGCCTACGTCGCTCACGGCTTCGCTCGTCACCC GGTGCTGGCACTGGCTGCCTACGCGGGGCTCATCGCCACTGCCTGCGGACACATGGCTTGGGGCGCTGCCCGCTG GCTTGGCCTCGCCGATGGCCGGTCTTCCAAACGGCGGCGGATGGGCGTCCATGCTGCTGCGGCTGGTATGACTGC TCTCTGGGCTGCGGGTGGGTTGGGTGTCGTGGCGCGGGGAGGGGCGGCGCAGGGCTGGATTGCGGCTGCCTACGA CCGGATGCTGGCTGCGGTGCGGCTGTAA |