© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|6182 |
| Gene name | |
| Location | Contig_658:8219..9116 |
| Strand | - |
| Gene length (bp) | 897 |
| Transcript length (bp) | 897 |
| Coding sequence length (bp) | 897 |
| Protein length (aa) | 299 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03328 | HpcH_HpaI | HpcH/HpaI aldolase/citrate lyase family | 5.2E-43 | 5 | 218 |
| PF15617 | C-C_Bond_Lyase | C-C_Bond_Lyase of the TIM-Barrel fold | 5.3E-08 | 193 | 282 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8N0X4|CLYBL_HUMAN | Citrate lyase subunit beta-like protein, mitochondrial OS=Homo sapiens GN=CLYBL PE=1 SV=2 | 8 | 280 | 6.0E-40 |
| sp|P44460|CITE_HAEIN | Citrate lyase subunit beta OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=citE PE=3 SV=1 | 1 | 280 | 2.0E-39 |
| sp|Q5I0K3|CLYBL_RAT | Citrate lyase subunit beta-like protein, mitochondrial OS=Rattus norvegicus GN=Clybl PE=2 SV=2 | 8 | 280 | 4.0E-39 |
| sp|Q8R4N0|CLYBL_MOUSE | Citrate lyase subunit beta-like protein, mitochondrial OS=Mus musculus GN=Clybl PE=1 SV=2 | 8 | 280 | 9.0E-39 |
| sp|P17725|CITE_KLEPN | Citrate lyase subunit beta OS=Klebsiella pneumoniae GN=citE PE=1 SV=2 | 1 | 280 | 1.0E-37 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8N0X4|CLYBL_HUMAN | Citrate lyase subunit beta-like protein, mitochondrial OS=Homo sapiens GN=CLYBL PE=1 SV=2 | 8 | 280 | 6.0E-40 |
| sp|P44460|CITE_HAEIN | Citrate lyase subunit beta OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=citE PE=3 SV=1 | 1 | 280 | 2.0E-39 |
| sp|Q5I0K3|CLYBL_RAT | Citrate lyase subunit beta-like protein, mitochondrial OS=Rattus norvegicus GN=Clybl PE=2 SV=2 | 8 | 280 | 4.0E-39 |
| sp|Q8R4N0|CLYBL_MOUSE | Citrate lyase subunit beta-like protein, mitochondrial OS=Mus musculus GN=Clybl PE=1 SV=2 | 8 | 280 | 9.0E-39 |
| sp|P17725|CITE_KLEPN | Citrate lyase subunit beta OS=Klebsiella pneumoniae GN=citE PE=1 SV=2 | 1 | 280 | 1.0E-37 |
| sp|P0A9I1|CITE_ECOLI | Citrate lyase subunit beta OS=Escherichia coli (strain K12) GN=citE PE=2 SV=1 | 1 | 283 | 4.0E-34 |
| sp|P0A9I2|CITE_ECOL6 | Citrate lyase subunit beta OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=citE PE=3 SV=1 | 1 | 283 | 4.0E-34 |
| sp|O53078|CITE_LEUMC | Citrate lyase subunit beta OS=Leuconostoc mesenteroides subsp. cremoris GN=citE PE=3 SV=1 | 8 | 280 | 5.0E-34 |
| sp|D3JV05|MCTE_RHOS4 | (3S)-malyl-CoA thioesterase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=mcl2 PE=1 SV=1 | 2 | 280 | 6.0E-32 |
| sp|A3PN16|MCTE_RHOS1 | (3S)-malyl-CoA thioesterase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=mcl2 PE=3 SV=1 | 2 | 280 | 2.0E-31 |
| sp|B9KNB6|MCTE_RHOSK | (3S)-malyl-CoA thioesterase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=mcl2 PE=3 SV=1 | 2 | 280 | 2.0E-31 |
| sp|A4WNM9|MCTE_RHOS5 | (3S)-malyl-CoA thioesterase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=mcl2 PE=3 SV=1 | 2 | 280 | 1.0E-30 |
| sp|Q9RUZ0|CITEL_DEIRA | Citrate lyase subunit beta-like protein OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1240 PE=1 SV=1 | 1 | 276 | 2.0E-30 |
| sp|D5AR83|MCAL_RHOCB | L-malyl-CoA/beta-methylmalyl-CoA lyase OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=mcl1 PE=3 SV=1 | 1 | 279 | 7.0E-25 |
| sp|B6E2X2|MCAL_RHOCA | L-malyl-CoA/beta-methylmalyl-CoA lyase OS=Rhodobacter capsulatus GN=mcl1 PE=1 SV=1 | 1 | 279 | 7.0E-25 |
| sp|A4WVF5|MCAL_RHOS5 | L-malyl-CoA/beta-methylmalyl-CoA lyase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=mcl1 PE=3 SV=2 | 9 | 279 | 2.0E-23 |
| sp|B9KLE8|MCAL_RHOSK | L-malyl-CoA/beta-methylmalyl-CoA lyase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=mcl1 PE=3 SV=2 | 9 | 279 | 1.0E-22 |
| sp|Q3J5L6|MCAL_RHOS4 | L-malyl-CoA/beta-methylmalyl-CoA lyase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=mcl1 PE=1 SV=1 | 9 | 279 | 1.0E-22 |
| sp|A3PGR7|MCAL_RHOS1 | L-malyl-CoA/beta-methylmalyl-CoA lyase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=mcl1 PE=3 SV=1 | 9 | 279 | 1.0E-22 |
| sp|P9WPE1|CITEL_MYCTU | Citrate lyase subunit beta-like protein OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=citE PE=1 SV=1 | 11 | 278 | 9.0E-19 |
| sp|P9WPE0|CITEL_MYCTO | Citrate lyase subunit beta-like protein OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=citE PE=3 SV=1 | 11 | 278 | 9.0E-19 |
| sp|S5N020|MCLA_CHLAU | Malyl-CoA/beta-methylmalyl-CoA/citramalyl-CoA lyase OS=Chloroflexus aurantiacus GN=mcl PE=1 SV=1 | 50 | 278 | 2.0E-13 |
| sp|A9WC35|MCLA_CHLAA | Malyl-CoA/beta-methylmalyl-CoA/citramalyl-CoA lyase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=mclA PE=3 SV=1 | 50 | 278 | 2.0E-13 |
| sp|Q5V463|MCAL_HALMA | L-malyl-CoA/beta-methylmalyl-CoA lyase OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=citE1 PE=1 SV=1 | 9 | 264 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| Orthofinder run ID | 4 |
| Orthogroup | 1450 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|6182 MLVKSLRLASDNITYDLEDSVTPARKPEARQDLKAHLARLTCRPPAVAELAVRVNAVSTPHSIHDLTVAASSPLV DAVVVPKVESAEDVTFVSSVLRHVASDRQTQGSRNPISIIALIESANAVMNLAAISKASPHLDGLIFAAEDFALD LSITRTPSLTEFLYARSAIVTAARAARLTSAIDLVCTSYKGEEGLSRLRQECAGGKSMGFNGKQCIHPDQLQTVQ AMFAPSREDVEWAVRVVMADEKATAAGRGAWTLDGKMIDAPVVGKARAIVSKAESCGFDVPGLRLRWADQEPE* |
| Coding | >Ophun1|6182 ATGCTCGTCAAATCCCTCCGCCTGGCATCAGACAACATCACCTACGACCTCGAGGACTCCGTCACTCCCGCCCGT AAGCCAGAGGCTCGTCAAGACCTCAAGGCTCATCTCGCCCGCCTCACTTGTCGCCCTCCCGCCGTCGCGGAGCTC GCCGTTCGCGTCAACGCCGTGTCGACGCCTCACTCCATCCATGACCTCACCGTCGCAGCCTCGTCGCCCCTCGTC GATGCAGTCGTCGTCCCCAAGGTCGAATCGGCTGAAGACGTCACCTTTGTATCTTCCGTCTTGCGCCACGTCGCG TCCGACCGCCAAACCCAAGGCTCCCGGAACCCCATCAGCATCATCGCTCTCATTGAATCCGCCAACGCCGTCATG AACCTCGCCGCTATATCCAAGGCCTCTCCCCACCTCGACGGCCTCATCTTTGCAGCCGAAGACTTTGCCCTCGAC CTCTCCATCACCCGCACGCCCTCGCTGACCGAGTTCCTCTACGCCCGCTCCGCAATCGTCACCGCCGCCCGCGCA GCTCGCCTGACCAGCGCCATAGATCTCGTCTGCACCTCTTACAAGGGGGAAGAGGGTCTTTCCCGGCTTCGCCAA GAGTGCGCCGGCGGCAAGTCCATGGGCTTCAACGGGAAGCAGTGTATCCACCCCGATCAGCTTCAAACCGTCCAA GCCATGTTCGCCCCTTCGAGGGAAGACGTCGAGTGGGCCGTCCGTGTCGTCATGGCCGATGAAAAGGCCACGGCC GCCGGTCGAGGCGCCTGGACGCTCGACGGCAAAATGATCGACGCCCCCGTCGTGGGCAAGGCGCGCGCCATCGTT TCCAAGGCCGAGAGCTGCGGCTTTGATGTGCCGGGCCTTCGTCTGCGCTGGGCAGACCAGGAGCCGGAGTGA |
| Transcript | >Ophun1|6182 ATGCTCGTCAAATCCCTCCGCCTGGCATCAGACAACATCACCTACGACCTCGAGGACTCCGTCACTCCCGCCCGT AAGCCAGAGGCTCGTCAAGACCTCAAGGCTCATCTCGCCCGCCTCACTTGTCGCCCTCCCGCCGTCGCGGAGCTC GCCGTTCGCGTCAACGCCGTGTCGACGCCTCACTCCATCCATGACCTCACCGTCGCAGCCTCGTCGCCCCTCGTC GATGCAGTCGTCGTCCCCAAGGTCGAATCGGCTGAAGACGTCACCTTTGTATCTTCCGTCTTGCGCCACGTCGCG TCCGACCGCCAAACCCAAGGCTCCCGGAACCCCATCAGCATCATCGCTCTCATTGAATCCGCCAACGCCGTCATG AACCTCGCCGCTATATCCAAGGCCTCTCCCCACCTCGACGGCCTCATCTTTGCAGCCGAAGACTTTGCCCTCGAC CTCTCCATCACCCGCACGCCCTCGCTGACCGAGTTCCTCTACGCCCGCTCCGCAATCGTCACCGCCGCCCGCGCA GCTCGCCTGACCAGCGCCATAGATCTCGTCTGCACCTCTTACAAGGGGGAAGAGGGTCTTTCCCGGCTTCGCCAA GAGTGCGCCGGCGGCAAGTCCATGGGCTTCAACGGGAAGCAGTGTATCCACCCCGATCAGCTTCAAACCGTCCAA GCCATGTTCGCCCCTTCGAGGGAAGACGTCGAGTGGGCCGTCCGTGTCGTCATGGCCGATGAAAAGGCCACGGCC GCCGGTCGAGGCGCCTGGACGCTCGACGGCAAAATGATCGACGCCCCCGTCGTGGGCAAGGCGCGCGCCATCGTT TCCAAGGCCGAGAGCTGCGGCTTTGATGTGCCGGGCCTTCGTCTGCGCTGGGCAGACCAGGAGCCGGAGTGA |
| Gene | >Ophun1|6182 ATGCTCGTCAAATCCCTCCGCCTGGCATCAGACAACATCACCTACGACCTCGAGGACTCCGTCACTCCCGCCCGT AAGCCAGAGGCTCGTCAAGACCTCAAGGCTCATCTCGCCCGCCTCACTTGTCGCCCTCCCGCCGTCGCGGAGCTC GCCGTTCGCGTCAACGCCGTGTCGACGCCTCACTCCATCCATGACCTCACCGTCGCAGCCTCGTCGCCCCTCGTC GATGCAGTCGTCGTCCCCAAGGTCGAATCGGCTGAAGACGTCACCTTTGTATCTTCCGTCTTGCGCCACGTCGCG TCCGACCGCCAAACCCAAGGCTCCCGGAACCCCATCAGCATCATCGCTCTCATTGAATCCGCCAACGCCGTCATG AACCTCGCCGCTATATCCAAGGCCTCTCCCCACCTCGACGGCCTCATCTTTGCAGCCGAAGACTTTGCCCTCGAC CTCTCCATCACCCGCACGCCCTCGCTGACCGAGTTCCTCTACGCCCGCTCCGCAATCGTCACCGCCGCCCGCGCA GCTCGCCTGACCAGCGCCATAGATCTCGTCTGCACCTCTTACAAGGGGGAAGAGGGTCTTTCCCGGCTTCGCCAA GAGTGCGCCGGCGGCAAGTCCATGGGCTTCAACGGGAAGCAGTGTATCCACCCCGATCAGCTTCAAACCGTCCAA GCCATGTTCGCCCCTTCGAGGGAAGACGTCGAGTGGGCCGTCCGTGTCGTCATGGCCGATGAAAAGGCCACGGCC GCCGGTCGAGGCGCCTGGACGCTCGACGGCAAAATGATCGACGCCCCCGTCGTGGGCAAGGCGCGCGCCATCGTT TCCAAGGCCGAGAGCTGCGGCTTTGATGTGCCGGGCCTTCGTCTGCGCTGGGCAGACCAGGAGCCGGAGTGA |