Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|6056
Gene name
LocationContig_634:6505..7396
Strand-
Gene length (bp)891
Transcript length (bp)891
Coding sequence length (bp)891
Protein length (aa) 297

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09439 SRPRB Signal recognition particle receptor beta subunit 7.7E-27 47 238
PF01926 MMR_HSR1 50S ribosome-binding GTPase 3.0E-07 50 159

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P36057|SRPB_YEAST Signal recognition particle receptor subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRP102 PE=1 SV=1 19 246 2.0E-12
sp|P47758|SRPRB_MOUSE Signal recognition particle receptor subunit beta OS=Mus musculus GN=Srprb PE=1 SV=1 42 293 1.0E-09
sp|O13950|SRPB_SCHPO Signal recognition particle receptor subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp102 PE=3 SV=1 25 226 1.0E-08
sp|Q9Y5M8|SRPRB_HUMAN Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3 42 293 2.0E-08
sp|Q4FZX7|SRPRB_RAT Signal recognition particle receptor subunit beta OS=Rattus norvegicus GN=Srprb PE=2 SV=1 42 226 5.0E-08

GO

GO Term Description Terminal node
GO:0005525 GTP binding Yes
GO:0097367 carbohydrate derivative binding No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0043168 anion binding No
GO:0032555 purine ribonucleotide binding No
GO:0005488 binding No
GO:0043167 ion binding No
GO:1901363 heterocyclic compound binding No
GO:0036094 small molecule binding No
GO:0032561 guanyl ribonucleotide binding No
GO:0097159 organic cyclic compound binding No
GO:0032553 ribonucleotide binding No
GO:0000166 nucleotide binding No
GO:0003674 molecular_function No
GO:0019001 guanyl nucleotide binding No
GO:0017076 purine nucleotide binding No
GO:1901265 nucleoside phosphate binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 15 37 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|6056
MSSIPHLIESLLTPSLPVLLLGLLIVIGAPILLHLIVISSSSAYTSPPAILLLGPPAAGKTALATALERGSLSSS
SAGPSQTRTSQVSHAVELNASTDSSSRRSFRNHDDASGTHTKFRLVDTPGHAKLRSAAMASLAGERRLKAVVFLV
DAAALAEQDALVPTAAYLYDLLLFLQRRAAAAKSGTRLAVPILIAANKTDLFTALPAAVVRTRLESELTRIRASR
SKGLLDSGVGIDDVGESEDGWLGEYGSADFSMEQMREFDIDIDVIGGSVTGHGEGGPDIDGWWWWMAQRVS*
Coding >Ophun1|6056
ATGTCCTCAATACCACACCTCATCGAATCCCTCCTCACCCCCTCCCTCCCCGTCCTCCTCCTCGGCCTCCTCATC
GTCATCGGAGCCCCCATCCTCCTCCACCTCATCGTCATCTCCTCCTCCTCAGCCTACACCTCCCCCCCCGCCATC
CTCCTCCTCGGCCCCCCAGCCGCCGGAAAGACAGCCCTCGCCACCGCCCTCGAGCGCGGATCCCTCAGCAGCAGC
AGCGCCGGTCCTTCGCAGACGCGTACGTCGCAGGTCTCCCACGCCGTTGAGCTCAACGCCTCGACGGATTCATCG
TCTCGTCGCTCGTTTCGAAATCATGATGACGCGTCCGGCACGCACACCAAGTTTCGCCTCGTCGATACGCCAGGC
CATGCCAAGCTTCGAAGCGCCGCCATGGCCAGTCTTGCCGGTGAGCGCAGGTTGAAAGCCGTCGTCTTTCTCGTC
GATGCCGCCGCTCTCGCCGAGCAGGATGCCCTCGTCCCGACCGCGGCCTACCTCTACGACCTGCTGCTTTTTTTA
CAGAGGCGTGCCGCAGCCGCCAAGTCTGGCACTCGGCTTGCCGTTCCCATCCTCATCGCTGCCAATAAGACGGAT
CTTTTCACCGCGCTTCCCGCCGCTGTCGTGCGCACGCGCCTCGAGTCGGAGCTGACGCGTATAAGAGCGTCGAGG
AGCAAGGGCCTGCTGGATTCGGGCGTCGGCATCGACGACGTGGGCGAGTCCGAGGATGGCTGGCTGGGCGAGTAC
GGTTCAGCCGATTTCTCCATGGAGCAGATGCGCGAGTTCGACATCGACATCGACGTCATCGGGGGTAGCGTCACG
GGTCACGGGGAGGGAGGGCCGGACATTGACGGCTGGTGGTGGTGGATGGCACAGAGGGTTTCGTGA
Transcript >Ophun1|6056
ATGTCCTCAATACCACACCTCATCGAATCCCTCCTCACCCCCTCCCTCCCCGTCCTCCTCCTCGGCCTCCTCATC
GTCATCGGAGCCCCCATCCTCCTCCACCTCATCGTCATCTCCTCCTCCTCAGCCTACACCTCCCCCCCCGCCATC
CTCCTCCTCGGCCCCCCAGCCGCCGGAAAGACAGCCCTCGCCACCGCCCTCGAGCGCGGATCCCTCAGCAGCAGC
AGCGCCGGTCCTTCGCAGACGCGTACGTCGCAGGTCTCCCACGCCGTTGAGCTCAACGCCTCGACGGATTCATCG
TCTCGTCGCTCGTTTCGAAATCATGATGACGCGTCCGGCACGCACACCAAGTTTCGCCTCGTCGATACGCCAGGC
CATGCCAAGCTTCGAAGCGCCGCCATGGCCAGTCTTGCCGGTGAGCGCAGGTTGAAAGCCGTCGTCTTTCTCGTC
GATGCCGCCGCTCTCGCCGAGCAGGATGCCCTCGTCCCGACCGCGGCCTACCTCTACGACCTGCTGCTTTTTTTA
CAGAGGCGTGCCGCAGCCGCCAAGTCTGGCACTCGGCTTGCCGTTCCCATCCTCATCGCTGCCAATAAGACGGAT
CTTTTCACCGCGCTTCCCGCCGCTGTCGTGCGCACGCGCCTCGAGTCGGAGCTGACGCGTATAAGAGCGTCGAGG
AGCAAGGGCCTGCTGGATTCGGGCGTCGGCATCGACGACGTGGGCGAGTCCGAGGATGGCTGGCTGGGCGAGTAC
GGTTCAGCCGATTTCTCCATGGAGCAGATGCGCGAGTTCGACATCGACATCGACGTCATCGGGGGTAGCGTCACG
GGTCACGGGGAGGGAGGGCCGGACATTGACGGCTGGTGGTGGTGGATGGCACAGAGGGTTTCGTGA
Gene >Ophun1|6056
ATGTCCTCAATACCACACCTCATCGAATCCCTCCTCACCCCCTCCCTCCCCGTCCTCCTCCTCGGCCTCCTCATC
GTCATCGGAGCCCCCATCCTCCTCCACCTCATCGTCATCTCCTCCTCCTCAGCCTACACCTCCCCCCCCGCCATC
CTCCTCCTCGGCCCCCCAGCCGCCGGAAAGACAGCCCTCGCCACCGCCCTCGAGCGCGGATCCCTCAGCAGCAGC
AGCGCCGGTCCTTCGCAGACGCGTACGTCGCAGGTCTCCCACGCCGTTGAGCTCAACGCCTCGACGGATTCATCG
TCTCGTCGCTCGTTTCGAAATCATGATGACGCGTCCGGCACGCACACCAAGTTTCGCCTCGTCGATACGCCAGGC
CATGCCAAGCTTCGAAGCGCCGCCATGGCCAGTCTTGCCGGTGAGCGCAGGTTGAAAGCCGTCGTCTTTCTCGTC
GATGCCGCCGCTCTCGCCGAGCAGGATGCCCTCGTCCCGACCGCGGCCTACCTCTACGACCTGCTGCTTTTTTTA
CAGAGGCGTGCCGCAGCCGCCAAGTCTGGCACTCGGCTTGCCGTTCCCATCCTCATCGCTGCCAATAAGACGGAT
CTTTTCACCGCGCTTCCCGCCGCTGTCGTGCGCACGCGCCTCGAGTCGGAGCTGACGCGTATAAGAGCGTCGAGG
AGCAAGGGCCTGCTGGATTCGGGCGTCGGCATCGACGACGTGGGCGAGTCCGAGGATGGCTGGCTGGGCGAGTAC
GGTTCAGCCGATTTCTCCATGGAGCAGATGCGCGAGTTCGACATCGACATCGACGTCATCGGGGGTAGCGTCACG
GGTCACGGGGAGGGAGGGCCGGACATTGACGGCTGGTGGTGGTGGATGGCACAGAGGGTTTCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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