© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophun1|602 |
| Gene name | |
| Location | Contig_119:14332..15755 |
| Strand | + |
| Gene length (bp) | 1423 |
| Transcript length (bp) | 1311 |
| Coding sequence length (bp) | 1311 |
| Protein length (aa) | 437 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00190 | Cupin_1 | Cupin | 4.1E-19 | 107 | 236 |
| PF00190 | Cupin_1 | Cupin | 3.0E-20 | 280 | 398 |
| PF07883 | Cupin_2 | Cupin domain | 7.3E-13 | 131 | 203 |
| PF07883 | Cupin_2 | Cupin domain | 1.1E-13 | 310 | 384 |
| PF05899 | Cupin_3 | EutQ-like cupin domain | 7.1E-06 | 145 | 185 |
| PF02311 | AraC_binding | AraC-like ligand binding domain | 1.7E-04 | 140 | 190 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O34714|OXDC_BACSU | Oxalate decarboxylase OxdC OS=Bacillus subtilis (strain 168) GN=oxdC PE=1 SV=1 | 50 | 435 | 8.0E-147 |
| sp|O34767|OXDD_BACSU | Oxalate decarboxylase OxdD OS=Bacillus subtilis (strain 168) GN=oxdD PE=1 SV=1 | 55 | 434 | 7.0E-132 |
| sp|D4AKL6|OXDD_ARTBC | Probable oxalate decarboxylase ARB_04859 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04859 PE=1 SV=1 | 59 | 405 | 7.0E-89 |
| sp|D4B179|OXDC_ARTBC | Oxalate decarboxylase ARB_02208 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02208 PE=1 SV=1 | 59 | 405 | 6.0E-83 |
| sp|D4AKL6|OXDD_ARTBC | Probable oxalate decarboxylase ARB_04859 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04859 PE=1 SV=1 | 78 | 249 | 4.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O34714|OXDC_BACSU | Oxalate decarboxylase OxdC OS=Bacillus subtilis (strain 168) GN=oxdC PE=1 SV=1 | 50 | 435 | 8.0E-147 |
| sp|O34767|OXDD_BACSU | Oxalate decarboxylase OxdD OS=Bacillus subtilis (strain 168) GN=oxdD PE=1 SV=1 | 55 | 434 | 7.0E-132 |
| sp|D4AKL6|OXDD_ARTBC | Probable oxalate decarboxylase ARB_04859 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04859 PE=1 SV=1 | 59 | 405 | 7.0E-89 |
| sp|D4B179|OXDC_ARTBC | Oxalate decarboxylase ARB_02208 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02208 PE=1 SV=1 | 59 | 405 | 6.0E-83 |
| sp|D4AKL6|OXDD_ARTBC | Probable oxalate decarboxylase ARB_04859 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04859 PE=1 SV=1 | 78 | 249 | 4.0E-09 |
| sp|D4B179|OXDC_ARTBC | Oxalate decarboxylase ARB_02208 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02208 PE=1 SV=1 | 104 | 251 | 4.0E-09 |
| sp|Q6I544|GL52_ORYSJ | Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1 | 306 | 426 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0008150 | biological_process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0065007 | biological regulation | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|602 MKSSAVSGWLLLAVVGQSSALPGRRQSQQPLAPYTPGHRDPYDSKIDPVRQKLDPLPWRNGDGASVLGPWNRDRS RQSPDLVRPPSTDHGAISNMRWSFADSHMRIEEGGWTRQTTVRELPTSVELAGVNMRLDAGTIRELHWHKEAEWA YVLEGEVRVTAIDYEGGTFMDDLRKGDLWYFPSGVPHSLQGLGENGTEFLLIFDDGHFSEESTFLLTDWLAHTPL SVVGENFDLDPAVFKNLPPHEKYIFRGTKPGTLEQERPKGKHVKPSNYQFTHRMLEQTPKNTTGGQVRITDSQNF EISKTVAAAHVIIEPGALREMHWHPTADEWSFFIRGRARITVFAAEGNARTFDYQPGDVGIVPRNMGHFVENIGD EPVEMLEIFRSDRFRDFSLFQWMGETPRQMVVDHLFQHDEEAGRKFLEKIKDAEKDEVKQT* |
| Coding | >Ophun1|602 ATGAAGTCCTCCGCTGTCAGTGGATGGCTTCTGCTAGCCGTGGTAGGCCAGTCCTCAGCTCTGCCAGGCCGTCGT CAATCGCAGCAGCCGCTAGCCCCTTATACCCCCGGCCACCGCGACCCCTACGACAGCAAGATCGACCCCGTGCGT CAGAAGCTCGACCCGCTTCCCTGGCGGAACGGAGACGGCGCCTCGGTGCTGGGGCCATGGAACCGGGACCGCTCC CGGCAGAGCCCGGACCTGGTGCGGCCGCCGAGCACCGATCACGGAGCCATTTCCAATATGCGATGGAGTTTTGCC GACTCTCACATGCGAATCGAGGAAGGGGGTTGGACTAGGCAGACGACGGTTCGCGAGCTTCCAACCAGCGTCGAG CTGGCTGGCGTCAATATGCGGCTGGACGCGGGTACTATCCGCGAGCTGCACTGGCACAAGGAGGCAGAGTGGGCG TACGTCCTCGAAGGCGAGGTCCGCGTGACGGCCATCGACTATGAGGGCGGCACCTTTATGGATGATCTTCGAAAG GGAGACTTGTGGTATTTCCCCAGTGGCGTGCCTCACTCGCTGCAGGGGCTGGGCGAGAACGGCACCGAGTTTCTC CTCATCTTTGACGACGGCCACTTCTCCGAGGAATCTACCTTTTTACTGACGGATTGGCTGGCACACACACCCCTG TCCGTTGTCGGAGAGAACTTTGATCTCGATCCAGCTGTCTTCAAGAACTTGCCGCCCCACGAAAAGTACATTTTC CGCGGCACCAAGCCTGGAACTCTCGAACAAGAGCGGCCCAAGGGCAAGCACGTCAAGCCGTCGAATTACCAATTC ACTCACCGCATGCTCGAACAGACGCCCAAGAACACGACAGGCGGCCAGGTCCGCATCACCGACTCGCAGAACTTT GAGATCTCCAAGACGGTGGCCGCGGCACACGTCATCATAGAACCGGGAGCGCTCCGCGAGATGCATTGGCACCCT ACGGCAGACGAGTGGTCTTTTTTCATCCGCGGCCGGGCCCGAATCACCGTCTTCGCTGCCGAGGGCAACGCCCGG ACTTTTGACTACCAGCCGGGCGACGTCGGGATCGTGCCGAGAAACATGGGTCATTTTGTGGAGAATATCGGCGAC GAGCCGGTCGAGATGCTCGAGATCTTTCGCTCAGACCGGTTCCGCGACTTTTCTCTCTTCCAGTGGATGGGCGAG ACGCCGCGTCAGATGGTGGTGGATCACCTCTTCCAGCACGACGAGGAGGCCGGCCGTAAGTTCTTGGAGAAGATA AAGGATGCGGAAAAGGATGAGGTCAAGCAGACGTGA |
| Transcript | >Ophun1|602 ATGAAGTCCTCCGCTGTCAGTGGATGGCTTCTGCTAGCCGTGGTAGGCCAGTCCTCAGCTCTGCCAGGCCGTCGT CAATCGCAGCAGCCGCTAGCCCCTTATACCCCCGGCCACCGCGACCCCTACGACAGCAAGATCGACCCCGTGCGT CAGAAGCTCGACCCGCTTCCCTGGCGGAACGGAGACGGCGCCTCGGTGCTGGGGCCATGGAACCGGGACCGCTCC CGGCAGAGCCCGGACCTGGTGCGGCCGCCGAGCACCGATCACGGAGCCATTTCCAATATGCGATGGAGTTTTGCC GACTCTCACATGCGAATCGAGGAAGGGGGTTGGACTAGGCAGACGACGGTTCGCGAGCTTCCAACCAGCGTCGAG CTGGCTGGCGTCAATATGCGGCTGGACGCGGGTACTATCCGCGAGCTGCACTGGCACAAGGAGGCAGAGTGGGCG TACGTCCTCGAAGGCGAGGTCCGCGTGACGGCCATCGACTATGAGGGCGGCACCTTTATGGATGATCTTCGAAAG GGAGACTTGTGGTATTTCCCCAGTGGCGTGCCTCACTCGCTGCAGGGGCTGGGCGAGAACGGCACCGAGTTTCTC CTCATCTTTGACGACGGCCACTTCTCCGAGGAATCTACCTTTTTACTGACGGATTGGCTGGCACACACACCCCTG TCCGTTGTCGGAGAGAACTTTGATCTCGATCCAGCTGTCTTCAAGAACTTGCCGCCCCACGAAAAGTACATTTTC CGCGGCACCAAGCCTGGAACTCTCGAACAAGAGCGGCCCAAGGGCAAGCACGTCAAGCCGTCGAATTACCAATTC ACTCACCGCATGCTCGAACAGACGCCCAAGAACACGACAGGCGGCCAGGTCCGCATCACCGACTCGCAGAACTTT GAGATCTCCAAGACGGTGGCCGCGGCACACGTCATCATAGAACCGGGAGCGCTCCGCGAGATGCATTGGCACCCT ACGGCAGACGAGTGGTCTTTTTTCATCCGCGGCCGGGCCCGAATCACCGTCTTCGCTGCCGAGGGCAACGCCCGG ACTTTTGACTACCAGCCGGGCGACGTCGGGATCGTGCCGAGAAACATGGGTCATTTTGTGGAGAATATCGGCGAC GAGCCGGTCGAGATGCTCGAGATCTTTCGCTCAGACCGGTTCCGCGACTTTTCTCTCTTCCAGTGGATGGGCGAG ACGCCGCGTCAGATGGTGGTGGATCACCTCTTCCAGCACGACGAGGAGGCCGGCCGTAAGTTCTTGGAGAAGATA AAGGATGCGGAAAAGGATGAGGTCAAGCAGACGTGA |
| Gene | >Ophun1|602 ATGAAGTCCTCCGCTGTCAGTGGATGGCTTCTGCTAGCCGTGGTAGGCCAGTCCTCAGCTCTGCCAGGCCGTCGT CAATCGCAGCAGCCGCTAGCCCCTTATACCCCCGGCCACCGCGACCCCTACGACAGCAAGATCGACCCCGTGCGT CAGAAGCTCGACCCGCTTCCCTGGCGGAACGGAGACGGCGCCTCGGTGCTGGGGCCATGGAACCGGGACCGCTCC CGGCAGAGCCCGGACCTGGTGCGGCCGCCGAGCACCGATCACGGAGCCATTTCCAATATGCGATGGAGTTTTGCC GACTCTCACATGCGAATCGAGGTACGATTCGGAATTGGAGCGGATACTATCCCAGACACTGACCAATGTCTGCAG GAAGGGGGTTGGACTAGGCAGACGACGGTTCGCGAGCTTCCAACCAGCGTCGAGCTGGCTGGCGTCAATATGCGG CTGGACGCGGGTACTATCCGCGAGCTGCACTGGCACAAGGAGGCAGAGTGGGCGTACGTCCTCGAAGGCGAGGTC CGCGTGACGGCCATCGACTATGAGGGCGGCACCTTTATGGATGATCTTCGAAAGGGAGACTTGTGGTATTTCCCC AGTGGCGTGCCTCACTCGCTGCAGGGGCTGGGCGAGAACGGCACCGAGTTTCTCCTCATCTTTGACGACGGCCAC TTCTCCGAGGAATCTACCTTTTTACTGACGGATTGGCTGGGTGAGTTGAGCTGGCGTCCCCCTTTTTGACTCCCA CGCCTCTAACGCGACCTCAATAGCACACACACCCCTGTCCGTTGTCGGAGAGAACTTTGATCTCGATCCAGCTGT CTTCAAGAACTTGCCGCCCCACGAAAAGTACATTTTCCGCGGCACCAAGCCTGGAACTCTCGAACAAGAGCGGCC CAAGGGCAAGCACGTCAAGCCGTCGAATTACCAATTCACTCACCGCATGCTCGAACAGACGCCCAAGAACACGAC AGGCGGCCAGGTCCGCATCACCGACTCGCAGAACTTTGAGATCTCCAAGACGGTGGCCGCGGCACACGTCATCAT AGAACCGGGAGCGCTCCGCGAGATGCATTGGCACCCTACGGCAGACGAGTGGTCTTTTTTCATCCGCGGCCGGGC CCGAATCACCGTCTTCGCTGCCGAGGGCAACGCCCGGACTTTTGACTACCAGCCGGGCGACGTCGGGATCGTGCC GAGAAACATGGGTCATTTTGTGGAGAATATCGGCGACGAGCCGGTCGAGATGCTCGAGATCTTTCGCTCAGACCG GTTCCGCGACTTTTCTCTCTTCCAGTGGATGGGCGAGACGCCGCGTCAGATGGTGGTGGATCACCTCTTCCAGCA CGACGAGGAGGCCGGCCGTAAGTTCTTGGAGAAGATAAAGGATGCGGAAAAGGATGAGGTCAAGCAGACGTGA |