Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|5958
Gene name
LocationContig_618:8133..9744
Strand+
Gene length (bp)1611
Transcript length (bp)1611
Coding sequence length (bp)1611
Protein length (aa) 537

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07766 LETM1_RBD LETM1-like, RBD 3.9E-87 185 414

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O13920|MDM28_SCHPO LETM1 domain-containing protein mdm28, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdm28 PE=2 SV=3 143 466 7.0E-124
sp|Q06493|YLH47_YEAST LETM1 domain-containing protein YLH47, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLH47 PE=1 SV=1 140 466 4.0E-100
sp|Q08179|MDM38_YEAST Mitochondrial distribution and morphology protein 38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDM38 PE=1 SV=1 144 456 1.0E-84
sp|Q5ZK33|LETM1_CHICK LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1 144 488 9.0E-84
sp|Q0VCA3|LETM1_BOVIN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Bos taurus GN=LETM1 PE=2 SV=1 147 494 3.0E-80
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O13920|MDM28_SCHPO LETM1 domain-containing protein mdm28, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdm28 PE=2 SV=3 143 466 7.0E-124
sp|Q06493|YLH47_YEAST LETM1 domain-containing protein YLH47, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLH47 PE=1 SV=1 140 466 4.0E-100
sp|Q08179|MDM38_YEAST Mitochondrial distribution and morphology protein 38 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDM38 PE=1 SV=1 144 456 1.0E-84
sp|Q5ZK33|LETM1_CHICK LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1 144 488 9.0E-84
sp|Q0VCA3|LETM1_BOVIN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Bos taurus GN=LETM1 PE=2 SV=1 147 494 3.0E-80
sp|Q1LY46|LETM1_DANRE LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Danio rerio GN=letm1 PE=3 SV=2 138 480 1.0E-78
sp|Q0VA06|LETM1_XENTR LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Xenopus tropicalis GN=letm1 PE=2 SV=1 141 528 2.0E-77
sp|Q9Z2I0|LETM1_MOUSE LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Mus musculus GN=Letm1 PE=1 SV=1 146 476 1.0E-70
sp|O95202|LETM1_HUMAN LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Homo sapiens GN=LETM1 PE=1 SV=1 144 480 1.0E-70
sp|P91927|A60DA_DROME LETM1 and EF-hand domain-containing protein anon-60Da, mitochondrial OS=Drosophila melanogaster GN=Letm1 PE=2 SV=2 154 458 3.0E-70
sp|Q5XIN6|LETM1_RAT LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Letm1 PE=1 SV=1 144 476 6.0E-70
sp|Q28DA8|LETM2_XENTR LETM1 domain-containing protein LETM2, mitochondrial OS=Xenopus tropicalis GN=letm2 PE=2 SV=1 137 406 1.0E-55
sp|Q7TNU7|LETM2_MOUSE LETM1 domain-containing protein LETM2, mitochondrial OS=Mus musculus GN=Letm2 PE=1 SV=1 121 414 3.0E-55
sp|Q5PQQ5|LETM2_RAT LETM1 domain-containing protein LETM2, mitochondrial OS=Rattus norvegicus GN=Letm2 PE=2 SV=1 144 414 4.0E-54
sp|Q2VYF4|LETM2_HUMAN LETM1 domain-containing protein LETM2, mitochondrial OS=Homo sapiens GN=LETM2 PE=2 SV=2 149 414 1.0E-53
sp|A3KN46|LTMD1_BOVIN LETM1 domain-containing protein 1 OS=Bos taurus GN=LETMD1 PE=2 SV=1 173 408 1.0E-12
sp|Q6P1Q0|LTMD1_HUMAN LETM1 domain-containing protein 1 OS=Homo sapiens GN=LETMD1 PE=1 SV=1 173 415 3.0E-10
sp|Q924L1|LTMD1_MOUSE LETM1 domain-containing protein 1 OS=Mus musculus GN=Letmd1 PE=1 SV=1 173 415 1.0E-08
[Show less]

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 34 0.45

Transmembrane Domains

Domain # Start End Length
1 200 222 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|5958
MSASSAVARTAAARNPLLVGSALPRAFAPGWHARRDARIPALAVLVRSMATEHHRPDPQTTTSTTTTPPPGFNVE
RAKKPLARDDDGVAAAKQPQSKLQQQKQTAAQKQAGATKTEAAVLQLAAEKGDAAEKQELVKADQEDKKLTLWQK
VKREAHHYWDGTKLLAAEVRISWKLALKMAAGYDLSRRENKQLQRTVRDLGRLVPFSVFIIVPLGEALLPLALKL
FPNMLPSTFEGQKSKDAKASLLRSTRNEVSAFLKQTLKETGLPLSAATAHKEEFANFFRKVRSTGETPTRQDVIR
VCKVFRDDVTLDNLSRPQLVSMCRYMNLNTFGTDMMLRYQVRHRMRQIKRDDKAISFEGIDSLTVSELQTACAAR
GIRTHSVSPARMRTDLQTWLDLRLKEGVPSTLLVLSNAYMYGQGSDSEWNQVDALIGVLSSIPEELFHEMELEVH
NAEGAATNKQRLEVLKEQEELIEDENEQNEESQSTGMATPRDVEDIDEKEERQMSARAAGLEKTPAAEMVDAERE
TAARGNKEKTE*
Coding >Ophun1|5958
ATGAGTGCCTCGTCTGCGGTCGCCCGCACGGCGGCGGCTCGCAACCCGCTGCTGGTGGGAAGCGCCCTCCCGCGA
GCCTTTGCGCCTGGATGGCATGCCCGCCGCGATGCCCGAATCCCGGCGCTGGCCGTCTTGGTCCGCTCCATGGCT
ACCGAGCATCACCGGCCGGATCCCCAGACGACGACGTCGACGACGACGACGCCTCCGCCTGGCTTCAATGTCGAG
CGTGCTAAGAAGCCGCTGGCCCGGGACGACGACGGTGTGGCCGCGGCCAAGCAGCCTCAGTCTAAGCTCCAGCAG
CAGAAGCAGACGGCTGCACAAAAACAAGCCGGCGCGACAAAGACCGAGGCCGCCGTGCTGCAGCTGGCTGCGGAA
AAGGGCGACGCGGCGGAGAAGCAGGAGCTCGTCAAGGCCGACCAGGAAGACAAGAAGCTCACGCTGTGGCAAAAG
GTCAAGAGGGAGGCGCACCACTACTGGGACGGGACCAAGCTGCTCGCCGCCGAGGTGCGAATCAGCTGGAAGCTG
GCGCTCAAGATGGCGGCCGGCTACGATCTCTCGCGCAGGGAAAACAAGCAGCTGCAGCGGACGGTGCGGGATCTC
GGCCGGCTGGTGCCGTTTTCCGTCTTCATCATCGTGCCCCTGGGTGAGGCCTTGCTGCCGCTCGCTCTCAAACTC
TTCCCCAACATGCTGCCCAGCACGTTCGAGGGTCAAAAATCAAAGGACGCAAAGGCCAGCCTGCTACGGTCTACG
CGCAACGAAGTCAGCGCGTTCCTCAAGCAGACGCTCAAGGAGACGGGTCTGCCGCTGAGCGCGGCCACGGCCCAC
AAGGAGGAGTTTGCCAACTTCTTCCGCAAGGTGCGCTCGACGGGCGAGACGCCGACGCGGCAGGACGTGATCCGG
GTCTGCAAGGTGTTCCGCGATGACGTGACGCTCGACAACCTGTCGCGGCCGCAGCTCGTGTCCATGTGCCGGTAC
ATGAACCTCAACACGTTTGGGACCGACATGATGCTGCGCTACCAGGTGCGGCACCGGATGCGGCAGATCAAGCGC
GACGACAAGGCCATCAGCTTCGAGGGCATCGACAGCCTGACCGTGTCGGAGCTGCAGACGGCGTGCGCGGCCCGC
GGCATCCGCACCCACAGCGTGTCGCCGGCCCGGATGCGCACCGACCTGCAGACGTGGCTGGACCTGCGGCTGAAG
GAGGGCGTGCCGTCGACGCTGCTGGTGCTCAGCAACGCCTACATGTACGGCCAGGGGTCCGACTCGGAGTGGAAC
CAGGTGGACGCCCTCATCGGCGTGCTGTCGTCTATCCCCGAGGAGCTCTTCCACGAGATGGAGCTCGAGGTGCAC
AACGCCGAGGGCGCGGCCACAAACAAGCAGCGGCTCGAGGTTCTCAAGGAGCAGGAGGAGCTGATTGAGGACGAG
AACGAGCAGAACGAGGAGAGCCAGAGCACGGGCATGGCGACGCCGCGTGACGTCGAGGACATTGACGAGAAGGAG
GAGCGTCAGATGTCGGCGCGGGCGGCGGGGCTGGAGAAGACGCCGGCGGCTGAGATGGTTGACGCCGAGAGGGAG
ACGGCGGCCCGCGGCAACAAGGAGAAGACGGAGTGA
Transcript >Ophun1|5958
ATGAGTGCCTCGTCTGCGGTCGCCCGCACGGCGGCGGCTCGCAACCCGCTGCTGGTGGGAAGCGCCCTCCCGCGA
GCCTTTGCGCCTGGATGGCATGCCCGCCGCGATGCCCGAATCCCGGCGCTGGCCGTCTTGGTCCGCTCCATGGCT
ACCGAGCATCACCGGCCGGATCCCCAGACGACGACGTCGACGACGACGACGCCTCCGCCTGGCTTCAATGTCGAG
CGTGCTAAGAAGCCGCTGGCCCGGGACGACGACGGTGTGGCCGCGGCCAAGCAGCCTCAGTCTAAGCTCCAGCAG
CAGAAGCAGACGGCTGCACAAAAACAAGCCGGCGCGACAAAGACCGAGGCCGCCGTGCTGCAGCTGGCTGCGGAA
AAGGGCGACGCGGCGGAGAAGCAGGAGCTCGTCAAGGCCGACCAGGAAGACAAGAAGCTCACGCTGTGGCAAAAG
GTCAAGAGGGAGGCGCACCACTACTGGGACGGGACCAAGCTGCTCGCCGCCGAGGTGCGAATCAGCTGGAAGCTG
GCGCTCAAGATGGCGGCCGGCTACGATCTCTCGCGCAGGGAAAACAAGCAGCTGCAGCGGACGGTGCGGGATCTC
GGCCGGCTGGTGCCGTTTTCCGTCTTCATCATCGTGCCCCTGGGTGAGGCCTTGCTGCCGCTCGCTCTCAAACTC
TTCCCCAACATGCTGCCCAGCACGTTCGAGGGTCAAAAATCAAAGGACGCAAAGGCCAGCCTGCTACGGTCTACG
CGCAACGAAGTCAGCGCGTTCCTCAAGCAGACGCTCAAGGAGACGGGTCTGCCGCTGAGCGCGGCCACGGCCCAC
AAGGAGGAGTTTGCCAACTTCTTCCGCAAGGTGCGCTCGACGGGCGAGACGCCGACGCGGCAGGACGTGATCCGG
GTCTGCAAGGTGTTCCGCGATGACGTGACGCTCGACAACCTGTCGCGGCCGCAGCTCGTGTCCATGTGCCGGTAC
ATGAACCTCAACACGTTTGGGACCGACATGATGCTGCGCTACCAGGTGCGGCACCGGATGCGGCAGATCAAGCGC
GACGACAAGGCCATCAGCTTCGAGGGCATCGACAGCCTGACCGTGTCGGAGCTGCAGACGGCGTGCGCGGCCCGC
GGCATCCGCACCCACAGCGTGTCGCCGGCCCGGATGCGCACCGACCTGCAGACGTGGCTGGACCTGCGGCTGAAG
GAGGGCGTGCCGTCGACGCTGCTGGTGCTCAGCAACGCCTACATGTACGGCCAGGGGTCCGACTCGGAGTGGAAC
CAGGTGGACGCCCTCATCGGCGTGCTGTCGTCTATCCCCGAGGAGCTCTTCCACGAGATGGAGCTCGAGGTGCAC
AACGCCGAGGGCGCGGCCACAAACAAGCAGCGGCTCGAGGTTCTCAAGGAGCAGGAGGAGCTGATTGAGGACGAG
AACGAGCAGAACGAGGAGAGCCAGAGCACGGGCATGGCGACGCCGCGTGACGTCGAGGACATTGACGAGAAGGAG
GAGCGTCAGATGTCGGCGCGGGCGGCGGGGCTGGAGAAGACGCCGGCGGCTGAGATGGTTGACGCCGAGAGGGAG
ACGGCGGCCCGCGGCAACAAGGAGAAGACGGAGTGA
Gene >Ophun1|5958
ATGAGTGCCTCGTCTGCGGTCGCCCGCACGGCGGCGGCTCGCAACCCGCTGCTGGTGGGAAGCGCCCTCCCGCGA
GCCTTTGCGCCTGGATGGCATGCCCGCCGCGATGCCCGAATCCCGGCGCTGGCCGTCTTGGTCCGCTCCATGGCT
ACCGAGCATCACCGGCCGGATCCCCAGACGACGACGTCGACGACGACGACGCCTCCGCCTGGCTTCAATGTCGAG
CGTGCTAAGAAGCCGCTGGCCCGGGACGACGACGGTGTGGCCGCGGCCAAGCAGCCTCAGTCTAAGCTCCAGCAG
CAGAAGCAGACGGCTGCACAAAAACAAGCCGGCGCGACAAAGACCGAGGCCGCCGTGCTGCAGCTGGCTGCGGAA
AAGGGCGACGCGGCGGAGAAGCAGGAGCTCGTCAAGGCCGACCAGGAAGACAAGAAGCTCACGCTGTGGCAAAAG
GTCAAGAGGGAGGCGCACCACTACTGGGACGGGACCAAGCTGCTCGCCGCCGAGGTGCGAATCAGCTGGAAGCTG
GCGCTCAAGATGGCGGCCGGCTACGATCTCTCGCGCAGGGAAAACAAGCAGCTGCAGCGGACGGTGCGGGATCTC
GGCCGGCTGGTGCCGTTTTCCGTCTTCATCATCGTGCCCCTGGGTGAGGCCTTGCTGCCGCTCGCTCTCAAACTC
TTCCCCAACATGCTGCCCAGCACGTTCGAGGGTCAAAAATCAAAGGACGCAAAGGCCAGCCTGCTACGGTCTACG
CGCAACGAAGTCAGCGCGTTCCTCAAGCAGACGCTCAAGGAGACGGGTCTGCCGCTGAGCGCGGCCACGGCCCAC
AAGGAGGAGTTTGCCAACTTCTTCCGCAAGGTGCGCTCGACGGGCGAGACGCCGACGCGGCAGGACGTGATCCGG
GTCTGCAAGGTGTTCCGCGATGACGTGACGCTCGACAACCTGTCGCGGCCGCAGCTCGTGTCCATGTGCCGGTAC
ATGAACCTCAACACGTTTGGGACCGACATGATGCTGCGCTACCAGGTGCGGCACCGGATGCGGCAGATCAAGCGC
GACGACAAGGCCATCAGCTTCGAGGGCATCGACAGCCTGACCGTGTCGGAGCTGCAGACGGCGTGCGCGGCCCGC
GGCATCCGCACCCACAGCGTGTCGCCGGCCCGGATGCGCACCGACCTGCAGACGTGGCTGGACCTGCGGCTGAAG
GAGGGCGTGCCGTCGACGCTGCTGGTGCTCAGCAACGCCTACATGTACGGCCAGGGGTCCGACTCGGAGTGGAAC
CAGGTGGACGCCCTCATCGGCGTGCTGTCGTCTATCCCCGAGGAGCTCTTCCACGAGATGGAGCTCGAGGTGCAC
AACGCCGAGGGCGCGGCCACAAACAAGCAGCGGCTCGAGGTTCTCAAGGAGCAGGAGGAGCTGATTGAGGACGAG
AACGAGCAGAACGAGGAGAGCCAGAGCACGGGCATGGCGACGCCGCGTGACGTCGAGGACATTGACGAGAAGGAG
GAGCGTCAGATGTCGGCGCGGGCGGCGGGGCTGGAGAAGACGCCGGCGGCTGAGATGGTTGACGCCGAGAGGGAG
ACGGCGGCCCGCGGCAACAAGGAGAAGACGGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail