© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|5954 |
| Gene name | |
| Location | Contig_618:298..674 |
| Strand | - |
| Gene length (bp) | 376 |
| Transcript length (bp) | 219 |
| Coding sequence length (bp) | 219 |
| Protein length (aa) | 73 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06842 | DUF1242 | Protein of unknown function (DUF1242) | 6.2E-15 | 10 | 44 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|B5G2S6|KISHA_TAEGU | Protein kish-A OS=Taeniopygia guttata GN=TMEM167A PE=3 SV=1 | 1 | 69 | 9.0E-24 |
| sp|Q9CR64|KISHA_MOUSE | Protein kish-A OS=Mus musculus GN=Tmem167a PE=1 SV=1 | 1 | 69 | 9.0E-24 |
| sp|Q5ZII6|KISHA_CHICK | Protein kish-A OS=Gallus gallus GN=TMEM167A PE=3 SV=1 | 1 | 69 | 1.0E-23 |
| sp|Q5BJC2|KISHA_DANRE | Protein kish-A OS=Danio rerio GN=tmem167a PE=3 SV=1 | 1 | 69 | 2.0E-23 |
| sp|Q5RAL1|KISHA_PONAB | Protein kish-A OS=Pongo abelii GN=TMEM167A PE=3 SV=1 | 1 | 69 | 3.0E-23 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|B5G2S6|KISHA_TAEGU | Protein kish-A OS=Taeniopygia guttata GN=TMEM167A PE=3 SV=1 | 1 | 69 | 9.0E-24 |
| sp|Q9CR64|KISHA_MOUSE | Protein kish-A OS=Mus musculus GN=Tmem167a PE=1 SV=1 | 1 | 69 | 9.0E-24 |
| sp|Q5ZII6|KISHA_CHICK | Protein kish-A OS=Gallus gallus GN=TMEM167A PE=3 SV=1 | 1 | 69 | 1.0E-23 |
| sp|Q5BJC2|KISHA_DANRE | Protein kish-A OS=Danio rerio GN=tmem167a PE=3 SV=1 | 1 | 69 | 2.0E-23 |
| sp|Q5RAL1|KISHA_PONAB | Protein kish-A OS=Pongo abelii GN=TMEM167A PE=3 SV=1 | 1 | 69 | 3.0E-23 |
| sp|Q8TBQ9|KISHA_HUMAN | Protein kish-A OS=Homo sapiens GN=TMEM167A PE=1 SV=1 | 1 | 69 | 3.0E-23 |
| sp|Q148I3|KISHA_BOVIN | Protein kish-A OS=Bos taurus GN=TMEM167A PE=3 SV=1 | 1 | 69 | 3.0E-23 |
| sp|G2TRS3|KISH_SCHPO | Protein kish OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ksh1 PE=2 SV=1 | 1 | 71 | 1.0E-21 |
| sp|Q8TGJ3|KISH_YEAST | Protein kish OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KSH1 PE=3 SV=1 | 1 | 69 | 7.0E-21 |
| sp|A2VDC5|KISHA_XENLA | Protein kish-A OS=Xenopus laevis GN=tmem167a PE=3 SV=1 | 1 | 69 | 3.0E-20 |
| sp|Q28FL7|KISHA_XENTR | Protein kish-A OS=Xenopus tropicalis GN=tmem167a PE=3 SV=2 | 1 | 69 | 5.0E-20 |
| sp|Q9VWH8|KISH_DROME | Protein kish OS=Drosophila melanogaster GN=ksh PE=3 SV=2 | 1 | 69 | 1.0E-15 |
| sp|Q54HH9|KISH_DICDI | Protein kish OS=Dictyostelium discoideum GN=tmem167 PE=3 SV=1 | 1 | 69 | 2.0E-09 |
| sp|Q5RAU6|KISHB_PONAB | Protein kish-B OS=Pongo abelii GN=TMEM167B PE=3 SV=1 | 1 | 69 | 8.0E-07 |
| sp|Q9NRX6|KISHB_HUMAN | Protein kish-B OS=Homo sapiens GN=TMEM167B PE=3 SV=1 | 1 | 69 | 8.0E-07 |
| sp|Q80X45|KISHB_MOUSE | Protein kish-B OS=Mus musculus GN=Tmem167b PE=3 SV=1 | 1 | 69 | 1.0E-06 |
| sp|Q0IIL4|KISHB_BOVIN | Protein kish-B OS=Bos taurus GN=TMEM167B PE=3 SV=1 | 1 | 69 | 1.0E-06 |
| sp|Q28GL2|KISHB_XENTR | Protein kish-B OS=Xenopus tropicalis GN=tmem167b PE=3 SV=1 | 1 | 69 | 2.0E-06 |
| sp|Q6DE23|KISHB_XENLA | Protein kish-B OS=Xenopus laevis GN=tmem167b PE=3 SV=1 | 1 | 69 | 2.0E-06 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 49 | 71 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5232 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|5954 MSALFNIQSLLLVLLLLTCTSAYIHQIIPRILDSHKDGPLGIIWKFARVGERMSPYISLACVFMAVSMLVGY* |
| Coding | >Ophun1|5954 ATGTCGGCTCTCTTCAACATACAGTCACTGTTGCTCGTGCTCCTCCTCCTCACCTGCACCTCGGCCTATATCCAC CAGATTATCCCGCGGATACTCGACTCTCACAAGGATGGTCCCCTTGGCATAATATGGAAGTTCGCAAGGGTCGGC GAGCGCATGAGCCCCTACATCAGCCTGGCCTGCGTCTTTATGGCGGTGTCGATGCTCGTCGGCTACTGA |
| Transcript | >Ophun1|5954 ATGTCGGCTCTCTTCAACATACAGTCACTGTTGCTCGTGCTCCTCCTCCTCACCTGCACCTCGGCCTATATCCAC CAGATTATCCCGCGGATACTCGACTCTCACAAGGATGGTCCCCTTGGCATAATATGGAAGTTCGCAAGGGTCGGC GAGCGCATGAGCCCCTACATCAGCCTGGCCTGCGTCTTTATGGCGGTGTCGATGCTCGTCGGCTACTGA |
| Gene | >Ophun1|5954 ATGGTGAGTCTTGGGGCCTGACTTCAAGCGACGTTCTCGCTGACATGCCATCAGTCGGCTCTCTTCAACATACAG TCACTGTTGCTCGTGCTCCTCCTCCTCACCTGCACCTCGGCCTATATCCACCAGATTATCCCGCGGATACTCGAC TCTCACAAGGATGGGTGCGATTGTCTTTTTCTCCGATGGTGCAGCAGCTCTCTCTAACGGACTACTAGTCCCCTT GGCATAATATGGAAGTTCGCAAGGGTCGGCGAGCGCATGAGCCCCTACATCAGCCTGGCCTGCGTCTTTATGGCG GTGCGCAGAGATCAAACCCCCGGAGGATAGAGCGAAGCTGACGTCTGCCTAGGTGTCGATGCTCGTCGGCTACTG A |