Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|5892
Gene name
LocationContig_607:291..1724
Strand-
Gene length (bp)1433
Transcript length (bp)1266
Coding sequence length (bp)1266
Protein length (aa) 422

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09692 Arb1 Argonaute siRNA chaperone (ARC) complex subunit Arb1 5.8E-114 14 394

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9P7B8|ARB1_SCHPO Argonaute-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arb1 PE=1 SV=1 15 232 1.0E-19

GO

GO Term Description Terminal node
GO:0033167 ARC complex Yes
GO:0031047 gene silencing by RNA Yes
GO:0032991 protein-containing complex No
GO:0048519 negative regulation of biological process No
GO:0010468 regulation of gene expression No
GO:0031332 RNAi effector complex No
GO:0008150 biological_process No
GO:0140513 nuclear protein-containing complex No
GO:0009892 negative regulation of metabolic process No
GO:0005575 cellular_component No
GO:0010629 negative regulation of gene expression No
GO:0019222 regulation of metabolic process No
GO:0010605 negative regulation of macromolecule metabolic process No
GO:1990904 ribonucleoprotein complex No
GO:0065007 biological regulation No
GO:0060255 regulation of macromolecule metabolic process No
GO:0050789 regulation of biological process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 55 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|5892
MTKEDQKNQSVRLPKNRGTGFEEYFADPPMTPDEAAEEKTQIYASDIPFETRIQSCIQRFRFRRRLHEEKARYFN
EYLFLGGIDTSPNAFGGLHHSDLGDLTPSERRDATATDTVHSDPNTSDRFYSAGDENWSVDFTGVLAGFLSTSLV
SLTSGIRHEMETAVDVVENFLRYVRQHDVCPEYDHDVDRALALCADVRREWILLEKARASFPGPFHEAATQLFSP
SGKSAWDCPSVSLLKGLDYEAVFFTVCALLGETKTLAAAKGGNTVTRVFNCTVEVVSVQLPDADLAERFRSLAID
HVQHHPTPVGKAFFKPATIEEGWLDAAVDLPGRDTVAWLYFEQTILSNLKPGMKMALTIAELKTGIQFVKTWQNL
VPTFYTFLPQVLMRHYKMPRPNEKPAPSVQDPDAEEKQHVKEAQEG*
Coding >Ophun1|5892
ATGACGAAAGAGGATCAGAAAAACCAGTCGGTGCGGCTACCCAAGAACCGCGGCACTGGATTCGAAGAATACTTT
GCCGATCCGCCCATGACGCCTGACGAGGCAGCCGAGGAAAAGACTCAAATCTACGCCAGTGACATCCCCTTTGAA
ACCCGCATCCAATCCTGCATCCAACGCTTCCGCTTCCGCCGCCGCCTCCACGAAGAAAAAGCCCGCTACTTCAAC
GAATATCTCTTCCTCGGCGGCATCGACACCAGCCCCAACGCCTTCGGAGGCCTCCACCACAGCGACCTCGGCGAC
CTCACGCCCTCGGAACGCCGCGACGCGACAGCCACCGACACCGTCCACAGCGATCCCAACACGTCCGACCGCTTC
TACAGCGCCGGCGATGAGAACTGGTCCGTCGACTTTACAGGCGTCCTCGCAGGCTTCTTGTCCACCTCGCTCGTC
TCCCTCACCAGCGGAATCCGCCATGAGATGGAGACGGCTGTCGACGTGGTGGAAAACTTCCTTCGATACGTGAGG
CAGCACGATGTCTGCCCCGAGTATGACCATGATGTCGACAGGGCGCTTGCTCTTTGCGCAGACGTCAGGCGTGAA
TGGATCCTGCTTGAGAAAGCGAGAGCCTCGTTTCCAGGACCCTTTCATGAGGCTGCCACACAGCTATTCTCGCCT
TCGGGCAAGTCCGCCTGGGATTGCCCGTCGGTTTCGCTGCTCAAGGGTCTCGACTATGAAGCAGTCTTCTTCACC
GTCTGCGCTCTTCTCGGCGAGACAAAGACACTGGCAGCCGCCAAGGGAGGAAACACCGTCACGAGAGTATTCAAC
TGCACGGTCGAGGTAGTGAGCGTCCAACTTCCCGACGCAGACCTCGCCGAACGTTTCCGCTCCCTCGCCATCGAC
CACGTCCAACACCACCCAACCCCCGTGGGAAAAGCCTTCTTCAAGCCAGCCACCATCGAAGAGGGATGGTTAGAT
GCAGCCGTCGACCTACCGGGTCGGGACACAGTTGCGTGGCTGTACTTTGAGCAGACCATCCTGAGCAACCTGAAG
CCAGGCATGAAGATGGCGCTGACCATTGCCGAGCTGAAGACGGGGATTCAATTCGTCAAGACGTGGCAGAATCTG
GTGCCGACTTTTTATACTTTTCTGCCCCAGGTGCTCATGAGGCATTACAAGATGCCCAGGCCTAACGAGAAACCG
GCTCCGTCGGTGCAGGACCCTGATGCTGAGGAGAAGCAGCACGTCAAGGAGGCACAGGAGGGCTAG
Transcript >Ophun1|5892
ATGACGAAAGAGGATCAGAAAAACCAGTCGGTGCGGCTACCCAAGAACCGCGGCACTGGATTCGAAGAATACTTT
GCCGATCCGCCCATGACGCCTGACGAGGCAGCCGAGGAAAAGACTCAAATCTACGCCAGTGACATCCCCTTTGAA
ACCCGCATCCAATCCTGCATCCAACGCTTCCGCTTCCGCCGCCGCCTCCACGAAGAAAAAGCCCGCTACTTCAAC
GAATATCTCTTCCTCGGCGGCATCGACACCAGCCCCAACGCCTTCGGAGGCCTCCACCACAGCGACCTCGGCGAC
CTCACGCCCTCGGAACGCCGCGACGCGACAGCCACCGACACCGTCCACAGCGATCCCAACACGTCCGACCGCTTC
TACAGCGCCGGCGATGAGAACTGGTCCGTCGACTTTACAGGCGTCCTCGCAGGCTTCTTGTCCACCTCGCTCGTC
TCCCTCACCAGCGGAATCCGCCATGAGATGGAGACGGCTGTCGACGTGGTGGAAAACTTCCTTCGATACGTGAGG
CAGCACGATGTCTGCCCCGAGTATGACCATGATGTCGACAGGGCGCTTGCTCTTTGCGCAGACGTCAGGCGTGAA
TGGATCCTGCTTGAGAAAGCGAGAGCCTCGTTTCCAGGACCCTTTCATGAGGCTGCCACACAGCTATTCTCGCCT
TCGGGCAAGTCCGCCTGGGATTGCCCGTCGGTTTCGCTGCTCAAGGGTCTCGACTATGAAGCAGTCTTCTTCACC
GTCTGCGCTCTTCTCGGCGAGACAAAGACACTGGCAGCCGCCAAGGGAGGAAACACCGTCACGAGAGTATTCAAC
TGCACGGTCGAGGTAGTGAGCGTCCAACTTCCCGACGCAGACCTCGCCGAACGTTTCCGCTCCCTCGCCATCGAC
CACGTCCAACACCACCCAACCCCCGTGGGAAAAGCCTTCTTCAAGCCAGCCACCATCGAAGAGGGATGGTTAGAT
GCAGCCGTCGACCTACCGGGTCGGGACACAGTTGCGTGGCTGTACTTTGAGCAGACCATCCTGAGCAACCTGAAG
CCAGGCATGAAGATGGCGCTGACCATTGCCGAGCTGAAGACGGGGATTCAATTCGTCAAGACGTGGCAGAATCTG
GTGCCGACTTTTTATACTTTTCTGCCCCAGGTGCTCATGAGGCATTACAAGATGCCCAGGCCTAACGAGAAACCG
GCTCCGTCGGTGCAGGACCCTGATGCTGAGGAGAAGCAGCACGTCAAGGAGGCACAGGAGGGCTAG
Gene >Ophun1|5892
ATGACGAAAGAGGATCAGAAAAACCAGTCGGTGCGGCTACCCAAGAACCGCGGCACTGGATTCGAAGGTGGGTAG
AAACACATGAGATATCGTGATAGCATGCTCATCTTCTAGCAGAATACTTTGCCGATCCGCCCATGACGCCTGACG
AGGCAGCCGAGGAAAAGACTCAAATCTACGCCAGGTCCGTCACCATAACCTCGTTATTCCCCCTTCCTCCTCGCC
CTACTAACCATCAAGCAGTGACATCCCCTTTGAAACGTACGCCCATCATCTCCTCTCCTCTTCTCCCCCAACCTC
CCACTCACCCCAACTCCAGCCGCATCCAATCCTGCATCCAACGCTTCCGCTTCCGCCGCCGCCTCCACGAAGAAA
AAGCCCGCTACTTCAACGAATATCTCTTCCTCGGCGGCATCGACACCAGCCCCAACGCCTTCGGAGGCCTCCACC
ACAGCGACCTCGGCGACCTCACGCCCTCGGAACGCCGCGACGCGACAGCCACCGACACCGTCCACAGCGATCCCA
ACACGTCCGACCGCTTCTACAGCGCCGGCGATGAGAACTGGTCCGTCGACTTTACAGGCGTCCTCGCAGGCTTCT
TGTCCACCTCGCTCGTCTCCCTCACCAGCGGAATCCGCCATGAGATGGAGACGGCTGTCGACGTGGTGGAAAACT
TCCTTCGATACGTGAGGCAGCACGATGTCTGCCCCGAGTATGACCATGATGTCGACAGGGCGCTTGCTCTTTGCG
CAGACGTCAGGCGTGAATGGATCCTGCTTGAGAAAGCGAGAGCCTCGTTTCCAGGACCCTTTCATGAGGCTGCCA
CACAGCTATTCTCGCCTTCGGGCAAGTCCGCCTGGGATTGCCCGTCGGTTTCGCTGCTCAAGGGTCTCGACTATG
AAGCAGTCTTCTTCACCGTCTGCGCTCTTCTCGGCGAGACAAAGACACTGGCAGCCGCCAAGGGAGGAAACACCG
TCACGAGAGTATTCAACTGCACGGTCGAGGTAGTGAGCGTCCAACTTCCCGACGCAGACCTCGCCGAACGTTTCC
GCTCCCTCGCCATCGACCACGTCCAACACCACCCAACCCCCGTGGGAAAAGCCTTCTTCAAGCCAGCCACCATCG
AAGAGGGATGGTTAGATGCAGCCGTCGACCTACCGGGTCGGGACACAGTTGCGTGGCTGTACTTTGAGCAGACCA
TCCTGAGCAACCTGAAGCCAGGCATGAAGATGGCGCTGACCATTGCCGAGCTGAAGACGGGGATTCAATTCGTCA
AGACGTGGCAGAATCTGGTGCCGACTTTTTATACTTTTCTGCCCCAGGTGCTCATGAGGCATTACAAGATGCCCA
GGCCTAACGAGAAACCGGCTCCGTCGGTGCAGGACCCTGATGCTGAGGAGAAGCAGCACGTCAAGGAGGCACAGG
AGGGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail