© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|5892 |
| Gene name | |
| Location | Contig_607:291..1724 |
| Strand | - |
| Gene length (bp) | 1433 |
| Transcript length (bp) | 1266 |
| Coding sequence length (bp) | 1266 |
| Protein length (aa) | 422 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09692 | Arb1 | Argonaute siRNA chaperone (ARC) complex subunit Arb1 | 5.8E-114 | 14 | 394 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P7B8|ARB1_SCHPO | Argonaute-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arb1 PE=1 SV=1 | 15 | 232 | 1.0E-19 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0033167 | ARC complex | Yes |
| GO:0031047 | gene silencing by RNA | Yes |
| GO:0032991 | protein-containing complex | No |
| GO:0048519 | negative regulation of biological process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0031332 | RNAi effector complex | No |
| GO:0008150 | biological_process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0009892 | negative regulation of metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0010629 | negative regulation of gene expression | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0010605 | negative regulation of macromolecule metabolic process | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0065007 | biological regulation | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0050789 | regulation of biological process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 55 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|5892 MTKEDQKNQSVRLPKNRGTGFEEYFADPPMTPDEAAEEKTQIYASDIPFETRIQSCIQRFRFRRRLHEEKARYFN EYLFLGGIDTSPNAFGGLHHSDLGDLTPSERRDATATDTVHSDPNTSDRFYSAGDENWSVDFTGVLAGFLSTSLV SLTSGIRHEMETAVDVVENFLRYVRQHDVCPEYDHDVDRALALCADVRREWILLEKARASFPGPFHEAATQLFSP SGKSAWDCPSVSLLKGLDYEAVFFTVCALLGETKTLAAAKGGNTVTRVFNCTVEVVSVQLPDADLAERFRSLAID HVQHHPTPVGKAFFKPATIEEGWLDAAVDLPGRDTVAWLYFEQTILSNLKPGMKMALTIAELKTGIQFVKTWQNL VPTFYTFLPQVLMRHYKMPRPNEKPAPSVQDPDAEEKQHVKEAQEG* |
| Coding | >Ophun1|5892 ATGACGAAAGAGGATCAGAAAAACCAGTCGGTGCGGCTACCCAAGAACCGCGGCACTGGATTCGAAGAATACTTT GCCGATCCGCCCATGACGCCTGACGAGGCAGCCGAGGAAAAGACTCAAATCTACGCCAGTGACATCCCCTTTGAA ACCCGCATCCAATCCTGCATCCAACGCTTCCGCTTCCGCCGCCGCCTCCACGAAGAAAAAGCCCGCTACTTCAAC GAATATCTCTTCCTCGGCGGCATCGACACCAGCCCCAACGCCTTCGGAGGCCTCCACCACAGCGACCTCGGCGAC CTCACGCCCTCGGAACGCCGCGACGCGACAGCCACCGACACCGTCCACAGCGATCCCAACACGTCCGACCGCTTC TACAGCGCCGGCGATGAGAACTGGTCCGTCGACTTTACAGGCGTCCTCGCAGGCTTCTTGTCCACCTCGCTCGTC TCCCTCACCAGCGGAATCCGCCATGAGATGGAGACGGCTGTCGACGTGGTGGAAAACTTCCTTCGATACGTGAGG CAGCACGATGTCTGCCCCGAGTATGACCATGATGTCGACAGGGCGCTTGCTCTTTGCGCAGACGTCAGGCGTGAA TGGATCCTGCTTGAGAAAGCGAGAGCCTCGTTTCCAGGACCCTTTCATGAGGCTGCCACACAGCTATTCTCGCCT TCGGGCAAGTCCGCCTGGGATTGCCCGTCGGTTTCGCTGCTCAAGGGTCTCGACTATGAAGCAGTCTTCTTCACC GTCTGCGCTCTTCTCGGCGAGACAAAGACACTGGCAGCCGCCAAGGGAGGAAACACCGTCACGAGAGTATTCAAC TGCACGGTCGAGGTAGTGAGCGTCCAACTTCCCGACGCAGACCTCGCCGAACGTTTCCGCTCCCTCGCCATCGAC CACGTCCAACACCACCCAACCCCCGTGGGAAAAGCCTTCTTCAAGCCAGCCACCATCGAAGAGGGATGGTTAGAT GCAGCCGTCGACCTACCGGGTCGGGACACAGTTGCGTGGCTGTACTTTGAGCAGACCATCCTGAGCAACCTGAAG CCAGGCATGAAGATGGCGCTGACCATTGCCGAGCTGAAGACGGGGATTCAATTCGTCAAGACGTGGCAGAATCTG GTGCCGACTTTTTATACTTTTCTGCCCCAGGTGCTCATGAGGCATTACAAGATGCCCAGGCCTAACGAGAAACCG GCTCCGTCGGTGCAGGACCCTGATGCTGAGGAGAAGCAGCACGTCAAGGAGGCACAGGAGGGCTAG |
| Transcript | >Ophun1|5892 ATGACGAAAGAGGATCAGAAAAACCAGTCGGTGCGGCTACCCAAGAACCGCGGCACTGGATTCGAAGAATACTTT GCCGATCCGCCCATGACGCCTGACGAGGCAGCCGAGGAAAAGACTCAAATCTACGCCAGTGACATCCCCTTTGAA ACCCGCATCCAATCCTGCATCCAACGCTTCCGCTTCCGCCGCCGCCTCCACGAAGAAAAAGCCCGCTACTTCAAC GAATATCTCTTCCTCGGCGGCATCGACACCAGCCCCAACGCCTTCGGAGGCCTCCACCACAGCGACCTCGGCGAC CTCACGCCCTCGGAACGCCGCGACGCGACAGCCACCGACACCGTCCACAGCGATCCCAACACGTCCGACCGCTTC TACAGCGCCGGCGATGAGAACTGGTCCGTCGACTTTACAGGCGTCCTCGCAGGCTTCTTGTCCACCTCGCTCGTC TCCCTCACCAGCGGAATCCGCCATGAGATGGAGACGGCTGTCGACGTGGTGGAAAACTTCCTTCGATACGTGAGG CAGCACGATGTCTGCCCCGAGTATGACCATGATGTCGACAGGGCGCTTGCTCTTTGCGCAGACGTCAGGCGTGAA TGGATCCTGCTTGAGAAAGCGAGAGCCTCGTTTCCAGGACCCTTTCATGAGGCTGCCACACAGCTATTCTCGCCT TCGGGCAAGTCCGCCTGGGATTGCCCGTCGGTTTCGCTGCTCAAGGGTCTCGACTATGAAGCAGTCTTCTTCACC GTCTGCGCTCTTCTCGGCGAGACAAAGACACTGGCAGCCGCCAAGGGAGGAAACACCGTCACGAGAGTATTCAAC TGCACGGTCGAGGTAGTGAGCGTCCAACTTCCCGACGCAGACCTCGCCGAACGTTTCCGCTCCCTCGCCATCGAC CACGTCCAACACCACCCAACCCCCGTGGGAAAAGCCTTCTTCAAGCCAGCCACCATCGAAGAGGGATGGTTAGAT GCAGCCGTCGACCTACCGGGTCGGGACACAGTTGCGTGGCTGTACTTTGAGCAGACCATCCTGAGCAACCTGAAG CCAGGCATGAAGATGGCGCTGACCATTGCCGAGCTGAAGACGGGGATTCAATTCGTCAAGACGTGGCAGAATCTG GTGCCGACTTTTTATACTTTTCTGCCCCAGGTGCTCATGAGGCATTACAAGATGCCCAGGCCTAACGAGAAACCG GCTCCGTCGGTGCAGGACCCTGATGCTGAGGAGAAGCAGCACGTCAAGGAGGCACAGGAGGGCTAG |
| Gene | >Ophun1|5892 ATGACGAAAGAGGATCAGAAAAACCAGTCGGTGCGGCTACCCAAGAACCGCGGCACTGGATTCGAAGGTGGGTAG AAACACATGAGATATCGTGATAGCATGCTCATCTTCTAGCAGAATACTTTGCCGATCCGCCCATGACGCCTGACG AGGCAGCCGAGGAAAAGACTCAAATCTACGCCAGGTCCGTCACCATAACCTCGTTATTCCCCCTTCCTCCTCGCC CTACTAACCATCAAGCAGTGACATCCCCTTTGAAACGTACGCCCATCATCTCCTCTCCTCTTCTCCCCCAACCTC CCACTCACCCCAACTCCAGCCGCATCCAATCCTGCATCCAACGCTTCCGCTTCCGCCGCCGCCTCCACGAAGAAA AAGCCCGCTACTTCAACGAATATCTCTTCCTCGGCGGCATCGACACCAGCCCCAACGCCTTCGGAGGCCTCCACC ACAGCGACCTCGGCGACCTCACGCCCTCGGAACGCCGCGACGCGACAGCCACCGACACCGTCCACAGCGATCCCA ACACGTCCGACCGCTTCTACAGCGCCGGCGATGAGAACTGGTCCGTCGACTTTACAGGCGTCCTCGCAGGCTTCT TGTCCACCTCGCTCGTCTCCCTCACCAGCGGAATCCGCCATGAGATGGAGACGGCTGTCGACGTGGTGGAAAACT TCCTTCGATACGTGAGGCAGCACGATGTCTGCCCCGAGTATGACCATGATGTCGACAGGGCGCTTGCTCTTTGCG CAGACGTCAGGCGTGAATGGATCCTGCTTGAGAAAGCGAGAGCCTCGTTTCCAGGACCCTTTCATGAGGCTGCCA CACAGCTATTCTCGCCTTCGGGCAAGTCCGCCTGGGATTGCCCGTCGGTTTCGCTGCTCAAGGGTCTCGACTATG AAGCAGTCTTCTTCACCGTCTGCGCTCTTCTCGGCGAGACAAAGACACTGGCAGCCGCCAAGGGAGGAAACACCG TCACGAGAGTATTCAACTGCACGGTCGAGGTAGTGAGCGTCCAACTTCCCGACGCAGACCTCGCCGAACGTTTCC GCTCCCTCGCCATCGACCACGTCCAACACCACCCAACCCCCGTGGGAAAAGCCTTCTTCAAGCCAGCCACCATCG AAGAGGGATGGTTAGATGCAGCCGTCGACCTACCGGGTCGGGACACAGTTGCGTGGCTGTACTTTGAGCAGACCA TCCTGAGCAACCTGAAGCCAGGCATGAAGATGGCGCTGACCATTGCCGAGCTGAAGACGGGGATTCAATTCGTCA AGACGTGGCAGAATCTGGTGCCGACTTTTTATACTTTTCTGCCCCAGGTGCTCATGAGGCATTACAAGATGCCCA GGCCTAACGAGAAACCGGCTCCGTCGGTGCAGGACCCTGATGCTGAGGAGAAGCAGCACGTCAAGGAGGCACAGG AGGGCTAG |