Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|589
Gene name
LocationContig_1182:779..2789
Strand+
Gene length (bp)2010
Transcript length (bp)1815
Coding sequence length (bp)1815
Protein length (aa) 605

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01424 R3H R3H domain 3.6E-09 323 379
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-04 181 251

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q09868|CIP2_SCHPO RNA-binding post-transcriptional regulator cip2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cip2 PE=1 SV=1 174 377 9.0E-50
sp|P34217|PIN4_YEAST RNA-binding protein PIN4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PIN4 PE=1 SV=1 162 282 7.0E-38
sp|O42923|CIP1_SCHPO RNA-binding post-transcriptional regulator cip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cip1 PE=1 SV=1 173 377 6.0E-37

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003676 nucleic acid binding Yes
GO:0097159 organic cyclic compound binding No
GO:0003674 molecular_function No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 32 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|589
MSQQPHDMGYLDYASPANRSPSSSRQNYGAPFAAGLSLPRQSQRPLDAPLGSSALYPNDRMAAGFNPRAMDSMPV
NAALHGGYMLDNGQAWNYSTAGVATVNGAVHGPNRQRSVNRRAALPQSWTDHAAMPMPNSLQPFPATLNGGHLQN
GCLRLDQGPSHTSPDLRSTASDGDQLIPTAIVIKNIPFAVRKETLASIMLDMNLPQPYAFNYHFDNGVFRGLAFA
NFQSADDTRVVIDAMNGMDVHGRKLRVEYKKMLPEAERERIEREKRERRGQLEEQHRAPMLHQQASLQSLGGMSQ
SQQRSTSSHLGDVDLNDPQTLEFYTELAMFKRDEGREALIFPSSIIPEHRRLIHILAHHMGLEHQSMGEADSRQL
TVLKRQQPSPTANVQNASVVNSLDMHKRGLSRAATFDFAADRDTRAANSNYAHAPGRQGPTLELPGSPDGSGIPN
NLRAAKSFADLRSFTPSPSQASSSYLAPGAGVGSIGTTATARFGDYMAHVPQQSSGTPGPKGDNGLGVALGGLSL
SPFDPSAMAAQTRNAPGAIGSQRPSGPKAAPERQPRVPDWESSAGFGGRGAGANGHAQRGSDSSDNGSRAVPTST
GRYH*
Coding >Ophun1|589
ATGAGCCAGCAGCCTCACGACATGGGCTACCTCGACTACGCCTCCCCTGCCAACCGCTCGCCGAGCTCGTCGAGG
CAAAACTACGGCGCCCCCTTCGCCGCAGGCTTGTCGCTGCCCCGGCAATCCCAGCGCCCTCTGGATGCCCCCCTC
GGCTCCTCTGCTCTCTATCCCAACGACCGCATGGCCGCCGGCTTCAACCCGCGCGCCATGGACAGCATGCCCGTC
AACGCCGCCCTCCACGGCGGCTACATGCTCGACAACGGACAGGCCTGGAACTACAGCACCGCCGGCGTCGCCACC
GTCAACGGCGCCGTCCACGGGCCCAATCGCCAGCGGAGCGTCAACCGCCGCGCCGCCTTGCCACAGAGCTGGACC
GATCACGCCGCCATGCCCATGCCAAACTCGCTGCAGCCCTTCCCCGCCACCCTCAACGGCGGCCATCTGCAGAAT
GGCTGCCTCCGCCTCGACCAGGGCCCTTCCCACACCTCGCCCGACCTGCGGTCCACCGCCTCGGACGGCGACCAG
CTGATTCCCACGGCCATCGTCATCAAAAACATACCCTTTGCCGTCCGCAAGGAGACGCTCGCCTCCATCATGCTC
GACATGAACCTCCCCCAGCCGTACGCCTTCAACTACCACTTCGACAACGGCGTCTTCCGCGGCCTCGCCTTTGCC
AACTTCCAGTCCGCCGACGACACCCGTGTCGTCATCGATGCCATGAACGGCATGGACGTCCACGGCCGCAAGCTG
CGCGTCGAGTACAAGAAGATGCTGCCCGAGGCCGAGCGGGAACGCATCGAGCGCGAGAAGCGGGAGCGTCGCGGC
CAGCTCGAGGAGCAGCACCGCGCACCCATGCTGCATCAGCAGGCATCGCTGCAGTCACTCGGCGGCATGTCTCAG
TCGCAGCAACGCAGCACCTCGAGTCACCTCGGTGATGTCGACCTAAACGATCCCCAGACGCTCGAGTTTTACACG
GAGCTTGCCATGTTCAAGCGCGACGAAGGGCGAGAGGCGCTCATATTCCCCTCCTCCATCATCCCCGAGCACCGG
CGGCTCATCCACATCCTCGCCCATCACATGGGGCTCGAGCATCAGTCCATGGGCGAGGCCGACTCCCGCCAGCTC
ACCGTCCTGAAGCGCCAACAGCCGTCGCCCACGGCAAACGTCCAGAACGCCTCCGTCGTCAACAGCCTCGACATG
CACAAGCGGGGCCTCAGCCGGGCCGCCACCTTTGACTTCGCCGCCGACCGCGACACCCGCGCGGCCAACAGCAAC
TACGCCCACGCCCCGGGCCGCCAGGGTCCCACGCTGGAGCTCCCCGGCAGCCCGGACGGGAGCGGCATACCCAAT
AACCTGCGCGCGGCCAAGAGCTTCGCCGACCTGCGCTCCTTTACCCCGAGCCCGTCACAGGCATCGTCGAGCTAT
CTGGCCCCCGGCGCCGGTGTTGGTAGCATCGGCACCACGGCCACGGCCCGCTTCGGCGACTACATGGCTCACGTC
CCCCAGCAGTCGTCGGGCACCCCCGGTCCCAAAGGCGACAACGGCCTCGGCGTCGCCCTCGGTGGCCTGAGCCTC
AGTCCCTTTGACCCCAGCGCCATGGCGGCACAGACGCGCAACGCCCCGGGCGCCATCGGCAGCCAGCGGCCCAGC
GGCCCCAAGGCGGCGCCCGAGAGGCAGCCCCGTGTCCCGGATTGGGAGTCATCGGCCGGCTTTGGCGGTCGCGGT
GCCGGCGCCAACGGTCACGCGCAGCGCGGCAGCGATTCGTCGGATAACGGCTCGCGCGCGGTGCCCACGTCGACG
GGCCGCTATCACTAG
Transcript >Ophun1|589
ATGAGCCAGCAGCCTCACGACATGGGCTACCTCGACTACGCCTCCCCTGCCAACCGCTCGCCGAGCTCGTCGAGG
CAAAACTACGGCGCCCCCTTCGCCGCAGGCTTGTCGCTGCCCCGGCAATCCCAGCGCCCTCTGGATGCCCCCCTC
GGCTCCTCTGCTCTCTATCCCAACGACCGCATGGCCGCCGGCTTCAACCCGCGCGCCATGGACAGCATGCCCGTC
AACGCCGCCCTCCACGGCGGCTACATGCTCGACAACGGACAGGCCTGGAACTACAGCACCGCCGGCGTCGCCACC
GTCAACGGCGCCGTCCACGGGCCCAATCGCCAGCGGAGCGTCAACCGCCGCGCCGCCTTGCCACAGAGCTGGACC
GATCACGCCGCCATGCCCATGCCAAACTCGCTGCAGCCCTTCCCCGCCACCCTCAACGGCGGCCATCTGCAGAAT
GGCTGCCTCCGCCTCGACCAGGGCCCTTCCCACACCTCGCCCGACCTGCGGTCCACCGCCTCGGACGGCGACCAG
CTGATTCCCACGGCCATCGTCATCAAAAACATACCCTTTGCCGTCCGCAAGGAGACGCTCGCCTCCATCATGCTC
GACATGAACCTCCCCCAGCCGTACGCCTTCAACTACCACTTCGACAACGGCGTCTTCCGCGGCCTCGCCTTTGCC
AACTTCCAGTCCGCCGACGACACCCGTGTCGTCATCGATGCCATGAACGGCATGGACGTCCACGGCCGCAAGCTG
CGCGTCGAGTACAAGAAGATGCTGCCCGAGGCCGAGCGGGAACGCATCGAGCGCGAGAAGCGGGAGCGTCGCGGC
CAGCTCGAGGAGCAGCACCGCGCACCCATGCTGCATCAGCAGGCATCGCTGCAGTCACTCGGCGGCATGTCTCAG
TCGCAGCAACGCAGCACCTCGAGTCACCTCGGTGATGTCGACCTAAACGATCCCCAGACGCTCGAGTTTTACACG
GAGCTTGCCATGTTCAAGCGCGACGAAGGGCGAGAGGCGCTCATATTCCCCTCCTCCATCATCCCCGAGCACCGG
CGGCTCATCCACATCCTCGCCCATCACATGGGGCTCGAGCATCAGTCCATGGGCGAGGCCGACTCCCGCCAGCTC
ACCGTCCTGAAGCGCCAACAGCCGTCGCCCACGGCAAACGTCCAGAACGCCTCCGTCGTCAACAGCCTCGACATG
CACAAGCGGGGCCTCAGCCGGGCCGCCACCTTTGACTTCGCCGCCGACCGCGACACCCGCGCGGCCAACAGCAAC
TACGCCCACGCCCCGGGCCGCCAGGGTCCCACGCTGGAGCTCCCCGGCAGCCCGGACGGGAGCGGCATACCCAAT
AACCTGCGCGCGGCCAAGAGCTTCGCCGACCTGCGCTCCTTTACCCCGAGCCCGTCACAGGCATCGTCGAGCTAT
CTGGCCCCCGGCGCCGGTGTTGGTAGCATCGGCACCACGGCCACGGCCCGCTTCGGCGACTACATGGCTCACGTC
CCCCAGCAGTCGTCGGGCACCCCCGGTCCCAAAGGCGACAACGGCCTCGGCGTCGCCCTCGGTGGCCTGAGCCTC
AGTCCCTTTGACCCCAGCGCCATGGCGGCACAGACGCGCAACGCCCCGGGCGCCATCGGCAGCCAGCGGCCCAGC
GGCCCCAAGGCGGCGCCCGAGAGGCAGCCCCGTGTCCCGGATTGGGAGTCATCGGCCGGCTTTGGCGGTCGCGGT
GCCGGCGCCAACGGTCACGCGCAGCGCGGCAGCGATTCGTCGGATAACGGCTCGCGCGCGGTGCCCACGTCGACG
GGCCGCTATCACTAG
Gene >Ophun1|589
ATGAGCCAGCAGCCTCACGACATGGGCTACCTCGACTACGCCTCCCCTGCCAACCGCTCGCCGAGCTCGTCGAGG
CAAAACTACGGCGCCCCCTTCGCCGCAGGCTTGTCGCTGCCCCGGCAATCCCAGCGCCCTCTGGATGCCCCCCTC
GGCTCCTCTGCTCTCTATCCCAACGACCGCATGGCCGCCGGCTTCAACCCGCGCGCCATGGACAGCATGCCCGTC
AACGCCGCCCTCCACGGCGGCTACATGCTCGACAACGGACAGGCCTGGAACTACAGCACCGCCGGCGTCGCCACC
GTCAACGGCGCCGTCCACGGGCCCAATCGCCAGCGGAGCGTCAACCGCCGCGCCGCCTTGCCACAGGTCTGTATC
GCCCCTGTTTCCGGCCCTGCCGAACCAGCTGACTCTCCCCCCTCCCCTCTCCAGAGCTGGACCGATCACGCCGCC
ATGCCCATGCCAAACTCGCTGCAGCCCTTCCCCGCCACCCTCAACGGCGGCCATCTGCAGAATGGCTGCCTCCGC
CTCGACCAGGGCCCTTCCCACACCTCGCCCGACCTGCGGTCCACCGCCTCGGACGGCGACCAGCTGATTCCCACG
GCCATCGTCATCAAAAACATACCCTTTGCCGTCCGCAAGGAGACGCTCGCCTCCATCATGCTCGACATGAACCTC
CCCCAGCCGTACGCCTTCAACTACCACTTCGACAACGGCGTCTTCCGCGGCCTCGCCTTTGCCAACTTCCAGTCC
GCCGACGACACCCGTGTCGTCATCGATGCCATGAACGGCATGGACGTCCACGGCCGCAAGCTGCGCGTCGAGTAC
AAGAAGATGCTGCCCGAGGCCGAGCGGGAACGCATCGAGCGCGAGAAGCGGGAGCGTCGCGGCCAGCTCGAGGAG
CAGCACCGCGCACCCATGCTGCATCAGCAGGCATCGCTGCAGTCACTCGGCGGCATGTCTCAGTCGCAGCAACGC
AGCACCTCGAGTCACCTCGGTATGGGCCGGCCGATACGAATCCAGCGTCGTCTTTTCTTCTTCTTTTATCTGGTT
GCTGACCTCTTCCGTCAGGTGATGTCGACCTAAACGATCCCCAGACGCTCGAGTTTTACACGGAGCTTGCCATGT
TCAAGCGCGACGAAGGGCGAGAGGCGCTCATATTCCCCTCCTCCATCATCCCCGAGCACCGGCGGCTCATCCACA
TCCTCGCCCATCACATGGGGCTCGAGCATCAGTCCATGGGCGAGGCCGACTCCCGCCAGCTCACCGTCCTGAAGC
GCCAACAGCCGTCGCCCACGGCAAACGTCCAGAACGCCTCCGTCGTCAACAGCCTCGACATGCACAAGCGGGGCC
TCAGCCGGGCCGCCACCTTTGACTTCGCCGCCGACCGCGACACCCGCGCGGCCAACAGCAACTACGCCCACGCCC
CGGGCCGCCAGGGTCCCACGCTGGAGCTCCCCGGCAGCCCGGACGGGAGCGGCATACCCAATAACCTGCGCGCGG
CCAAGAGCTTCGCCGACCTGCGCTCCTTTACCCCGAGCCCGTCACAGGCATCGTCGAGCTATCTGGCCCCCGGCG
CCGGTGTTGGTAGCATCGGCACCACGGCCACGGCCCGCTTCGGCGACTACATGGCTCACGTCCCCCAGCAGTCGT
CGGGCACCCCCGGTCCCAAAGGCGACAACGGCCTCGGCGTCGCCCTCGGTGGCCTGAGCCTCAGTCCCTTTGACC
CCAGCGCCATGGCGGCACAGACGCGCAACGCCCCGGGCGCCATCGGCAGCCAGCGGCCCAGCGGCCCCAAGGCGG
CGCCCGAGAGGCAGCCCCGTGTCCCGGATTGGGAGTCATCGGCCGGCTTTGGCGGTCGCGGTGCCGGCGCCAACG
GTCACGCGCAGCGCGGCAGCGGTAGGTCGTCTTTCGCGTCCGTTCCATCACGTCAAGCTGACGGCTCGTCTGGCC
TTAGATTCGTCGGATAACGGCTCGCGCGCGGTGCCCACGTCGACGGGCCGCTATCACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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