Protein ID | Ophun1|589 |
Gene name | |
Location | Contig_1182:779..2789 |
Strand | + |
Gene length (bp) | 2010 |
Transcript length (bp) | 1815 |
Coding sequence length (bp) | 1815 |
Protein length (aa) | 605 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01424 | R3H | R3H domain | 3.6E-09 | 323 | 379 |
PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.1E-04 | 181 | 251 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q09868|CIP2_SCHPO | RNA-binding post-transcriptional regulator cip2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cip2 PE=1 SV=1 | 174 | 377 | 9.0E-50 |
sp|P34217|PIN4_YEAST | RNA-binding protein PIN4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PIN4 PE=1 SV=1 | 162 | 282 | 7.0E-38 |
sp|O42923|CIP1_SCHPO | RNA-binding post-transcriptional regulator cip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cip1 PE=1 SV=1 | 173 | 377 | 6.0E-37 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003723 | RNA binding | Yes |
GO:0003676 | nucleic acid binding | Yes |
GO:0097159 | organic cyclic compound binding | No |
GO:0003674 | molecular_function | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0005488 | binding | No |
Orthofinder run ID | 4 |
Orthogroup | 3753 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophun1|589 MSQQPHDMGYLDYASPANRSPSSSRQNYGAPFAAGLSLPRQSQRPLDAPLGSSALYPNDRMAAGFNPRAMDSMPV NAALHGGYMLDNGQAWNYSTAGVATVNGAVHGPNRQRSVNRRAALPQSWTDHAAMPMPNSLQPFPATLNGGHLQN GCLRLDQGPSHTSPDLRSTASDGDQLIPTAIVIKNIPFAVRKETLASIMLDMNLPQPYAFNYHFDNGVFRGLAFA NFQSADDTRVVIDAMNGMDVHGRKLRVEYKKMLPEAERERIEREKRERRGQLEEQHRAPMLHQQASLQSLGGMSQ SQQRSTSSHLGDVDLNDPQTLEFYTELAMFKRDEGREALIFPSSIIPEHRRLIHILAHHMGLEHQSMGEADSRQL TVLKRQQPSPTANVQNASVVNSLDMHKRGLSRAATFDFAADRDTRAANSNYAHAPGRQGPTLELPGSPDGSGIPN NLRAAKSFADLRSFTPSPSQASSSYLAPGAGVGSIGTTATARFGDYMAHVPQQSSGTPGPKGDNGLGVALGGLSL SPFDPSAMAAQTRNAPGAIGSQRPSGPKAAPERQPRVPDWESSAGFGGRGAGANGHAQRGSDSSDNGSRAVPTST GRYH* |
Coding | >Ophun1|589 ATGAGCCAGCAGCCTCACGACATGGGCTACCTCGACTACGCCTCCCCTGCCAACCGCTCGCCGAGCTCGTCGAGG CAAAACTACGGCGCCCCCTTCGCCGCAGGCTTGTCGCTGCCCCGGCAATCCCAGCGCCCTCTGGATGCCCCCCTC GGCTCCTCTGCTCTCTATCCCAACGACCGCATGGCCGCCGGCTTCAACCCGCGCGCCATGGACAGCATGCCCGTC AACGCCGCCCTCCACGGCGGCTACATGCTCGACAACGGACAGGCCTGGAACTACAGCACCGCCGGCGTCGCCACC GTCAACGGCGCCGTCCACGGGCCCAATCGCCAGCGGAGCGTCAACCGCCGCGCCGCCTTGCCACAGAGCTGGACC GATCACGCCGCCATGCCCATGCCAAACTCGCTGCAGCCCTTCCCCGCCACCCTCAACGGCGGCCATCTGCAGAAT GGCTGCCTCCGCCTCGACCAGGGCCCTTCCCACACCTCGCCCGACCTGCGGTCCACCGCCTCGGACGGCGACCAG CTGATTCCCACGGCCATCGTCATCAAAAACATACCCTTTGCCGTCCGCAAGGAGACGCTCGCCTCCATCATGCTC GACATGAACCTCCCCCAGCCGTACGCCTTCAACTACCACTTCGACAACGGCGTCTTCCGCGGCCTCGCCTTTGCC AACTTCCAGTCCGCCGACGACACCCGTGTCGTCATCGATGCCATGAACGGCATGGACGTCCACGGCCGCAAGCTG CGCGTCGAGTACAAGAAGATGCTGCCCGAGGCCGAGCGGGAACGCATCGAGCGCGAGAAGCGGGAGCGTCGCGGC CAGCTCGAGGAGCAGCACCGCGCACCCATGCTGCATCAGCAGGCATCGCTGCAGTCACTCGGCGGCATGTCTCAG TCGCAGCAACGCAGCACCTCGAGTCACCTCGGTGATGTCGACCTAAACGATCCCCAGACGCTCGAGTTTTACACG GAGCTTGCCATGTTCAAGCGCGACGAAGGGCGAGAGGCGCTCATATTCCCCTCCTCCATCATCCCCGAGCACCGG CGGCTCATCCACATCCTCGCCCATCACATGGGGCTCGAGCATCAGTCCATGGGCGAGGCCGACTCCCGCCAGCTC ACCGTCCTGAAGCGCCAACAGCCGTCGCCCACGGCAAACGTCCAGAACGCCTCCGTCGTCAACAGCCTCGACATG CACAAGCGGGGCCTCAGCCGGGCCGCCACCTTTGACTTCGCCGCCGACCGCGACACCCGCGCGGCCAACAGCAAC TACGCCCACGCCCCGGGCCGCCAGGGTCCCACGCTGGAGCTCCCCGGCAGCCCGGACGGGAGCGGCATACCCAAT AACCTGCGCGCGGCCAAGAGCTTCGCCGACCTGCGCTCCTTTACCCCGAGCCCGTCACAGGCATCGTCGAGCTAT CTGGCCCCCGGCGCCGGTGTTGGTAGCATCGGCACCACGGCCACGGCCCGCTTCGGCGACTACATGGCTCACGTC CCCCAGCAGTCGTCGGGCACCCCCGGTCCCAAAGGCGACAACGGCCTCGGCGTCGCCCTCGGTGGCCTGAGCCTC AGTCCCTTTGACCCCAGCGCCATGGCGGCACAGACGCGCAACGCCCCGGGCGCCATCGGCAGCCAGCGGCCCAGC GGCCCCAAGGCGGCGCCCGAGAGGCAGCCCCGTGTCCCGGATTGGGAGTCATCGGCCGGCTTTGGCGGTCGCGGT GCCGGCGCCAACGGTCACGCGCAGCGCGGCAGCGATTCGTCGGATAACGGCTCGCGCGCGGTGCCCACGTCGACG GGCCGCTATCACTAG |
Transcript | >Ophun1|589 ATGAGCCAGCAGCCTCACGACATGGGCTACCTCGACTACGCCTCCCCTGCCAACCGCTCGCCGAGCTCGTCGAGG CAAAACTACGGCGCCCCCTTCGCCGCAGGCTTGTCGCTGCCCCGGCAATCCCAGCGCCCTCTGGATGCCCCCCTC GGCTCCTCTGCTCTCTATCCCAACGACCGCATGGCCGCCGGCTTCAACCCGCGCGCCATGGACAGCATGCCCGTC AACGCCGCCCTCCACGGCGGCTACATGCTCGACAACGGACAGGCCTGGAACTACAGCACCGCCGGCGTCGCCACC GTCAACGGCGCCGTCCACGGGCCCAATCGCCAGCGGAGCGTCAACCGCCGCGCCGCCTTGCCACAGAGCTGGACC GATCACGCCGCCATGCCCATGCCAAACTCGCTGCAGCCCTTCCCCGCCACCCTCAACGGCGGCCATCTGCAGAAT GGCTGCCTCCGCCTCGACCAGGGCCCTTCCCACACCTCGCCCGACCTGCGGTCCACCGCCTCGGACGGCGACCAG CTGATTCCCACGGCCATCGTCATCAAAAACATACCCTTTGCCGTCCGCAAGGAGACGCTCGCCTCCATCATGCTC GACATGAACCTCCCCCAGCCGTACGCCTTCAACTACCACTTCGACAACGGCGTCTTCCGCGGCCTCGCCTTTGCC AACTTCCAGTCCGCCGACGACACCCGTGTCGTCATCGATGCCATGAACGGCATGGACGTCCACGGCCGCAAGCTG CGCGTCGAGTACAAGAAGATGCTGCCCGAGGCCGAGCGGGAACGCATCGAGCGCGAGAAGCGGGAGCGTCGCGGC CAGCTCGAGGAGCAGCACCGCGCACCCATGCTGCATCAGCAGGCATCGCTGCAGTCACTCGGCGGCATGTCTCAG TCGCAGCAACGCAGCACCTCGAGTCACCTCGGTGATGTCGACCTAAACGATCCCCAGACGCTCGAGTTTTACACG GAGCTTGCCATGTTCAAGCGCGACGAAGGGCGAGAGGCGCTCATATTCCCCTCCTCCATCATCCCCGAGCACCGG CGGCTCATCCACATCCTCGCCCATCACATGGGGCTCGAGCATCAGTCCATGGGCGAGGCCGACTCCCGCCAGCTC ACCGTCCTGAAGCGCCAACAGCCGTCGCCCACGGCAAACGTCCAGAACGCCTCCGTCGTCAACAGCCTCGACATG CACAAGCGGGGCCTCAGCCGGGCCGCCACCTTTGACTTCGCCGCCGACCGCGACACCCGCGCGGCCAACAGCAAC TACGCCCACGCCCCGGGCCGCCAGGGTCCCACGCTGGAGCTCCCCGGCAGCCCGGACGGGAGCGGCATACCCAAT AACCTGCGCGCGGCCAAGAGCTTCGCCGACCTGCGCTCCTTTACCCCGAGCCCGTCACAGGCATCGTCGAGCTAT CTGGCCCCCGGCGCCGGTGTTGGTAGCATCGGCACCACGGCCACGGCCCGCTTCGGCGACTACATGGCTCACGTC CCCCAGCAGTCGTCGGGCACCCCCGGTCCCAAAGGCGACAACGGCCTCGGCGTCGCCCTCGGTGGCCTGAGCCTC AGTCCCTTTGACCCCAGCGCCATGGCGGCACAGACGCGCAACGCCCCGGGCGCCATCGGCAGCCAGCGGCCCAGC GGCCCCAAGGCGGCGCCCGAGAGGCAGCCCCGTGTCCCGGATTGGGAGTCATCGGCCGGCTTTGGCGGTCGCGGT GCCGGCGCCAACGGTCACGCGCAGCGCGGCAGCGATTCGTCGGATAACGGCTCGCGCGCGGTGCCCACGTCGACG GGCCGCTATCACTAG |
Gene | >Ophun1|589 ATGAGCCAGCAGCCTCACGACATGGGCTACCTCGACTACGCCTCCCCTGCCAACCGCTCGCCGAGCTCGTCGAGG CAAAACTACGGCGCCCCCTTCGCCGCAGGCTTGTCGCTGCCCCGGCAATCCCAGCGCCCTCTGGATGCCCCCCTC GGCTCCTCTGCTCTCTATCCCAACGACCGCATGGCCGCCGGCTTCAACCCGCGCGCCATGGACAGCATGCCCGTC AACGCCGCCCTCCACGGCGGCTACATGCTCGACAACGGACAGGCCTGGAACTACAGCACCGCCGGCGTCGCCACC GTCAACGGCGCCGTCCACGGGCCCAATCGCCAGCGGAGCGTCAACCGCCGCGCCGCCTTGCCACAGGTCTGTATC GCCCCTGTTTCCGGCCCTGCCGAACCAGCTGACTCTCCCCCCTCCCCTCTCCAGAGCTGGACCGATCACGCCGCC ATGCCCATGCCAAACTCGCTGCAGCCCTTCCCCGCCACCCTCAACGGCGGCCATCTGCAGAATGGCTGCCTCCGC CTCGACCAGGGCCCTTCCCACACCTCGCCCGACCTGCGGTCCACCGCCTCGGACGGCGACCAGCTGATTCCCACG GCCATCGTCATCAAAAACATACCCTTTGCCGTCCGCAAGGAGACGCTCGCCTCCATCATGCTCGACATGAACCTC CCCCAGCCGTACGCCTTCAACTACCACTTCGACAACGGCGTCTTCCGCGGCCTCGCCTTTGCCAACTTCCAGTCC GCCGACGACACCCGTGTCGTCATCGATGCCATGAACGGCATGGACGTCCACGGCCGCAAGCTGCGCGTCGAGTAC AAGAAGATGCTGCCCGAGGCCGAGCGGGAACGCATCGAGCGCGAGAAGCGGGAGCGTCGCGGCCAGCTCGAGGAG CAGCACCGCGCACCCATGCTGCATCAGCAGGCATCGCTGCAGTCACTCGGCGGCATGTCTCAGTCGCAGCAACGC AGCACCTCGAGTCACCTCGGTATGGGCCGGCCGATACGAATCCAGCGTCGTCTTTTCTTCTTCTTTTATCTGGTT GCTGACCTCTTCCGTCAGGTGATGTCGACCTAAACGATCCCCAGACGCTCGAGTTTTACACGGAGCTTGCCATGT TCAAGCGCGACGAAGGGCGAGAGGCGCTCATATTCCCCTCCTCCATCATCCCCGAGCACCGGCGGCTCATCCACA TCCTCGCCCATCACATGGGGCTCGAGCATCAGTCCATGGGCGAGGCCGACTCCCGCCAGCTCACCGTCCTGAAGC GCCAACAGCCGTCGCCCACGGCAAACGTCCAGAACGCCTCCGTCGTCAACAGCCTCGACATGCACAAGCGGGGCC TCAGCCGGGCCGCCACCTTTGACTTCGCCGCCGACCGCGACACCCGCGCGGCCAACAGCAACTACGCCCACGCCC CGGGCCGCCAGGGTCCCACGCTGGAGCTCCCCGGCAGCCCGGACGGGAGCGGCATACCCAATAACCTGCGCGCGG CCAAGAGCTTCGCCGACCTGCGCTCCTTTACCCCGAGCCCGTCACAGGCATCGTCGAGCTATCTGGCCCCCGGCG CCGGTGTTGGTAGCATCGGCACCACGGCCACGGCCCGCTTCGGCGACTACATGGCTCACGTCCCCCAGCAGTCGT CGGGCACCCCCGGTCCCAAAGGCGACAACGGCCTCGGCGTCGCCCTCGGTGGCCTGAGCCTCAGTCCCTTTGACC CCAGCGCCATGGCGGCACAGACGCGCAACGCCCCGGGCGCCATCGGCAGCCAGCGGCCCAGCGGCCCCAAGGCGG CGCCCGAGAGGCAGCCCCGTGTCCCGGATTGGGAGTCATCGGCCGGCTTTGGCGGTCGCGGTGCCGGCGCCAACG GTCACGCGCAGCGCGGCAGCGGTAGGTCGTCTTTCGCGTCCGTTCCATCACGTCAAGCTGACGGCTCGTCTGGCC TTAGATTCGTCGGATAACGGCTCGCGCGCGGTGCCCACGTCGACGGGCCGCTATCACTAG |