Protein ID | Ophun1|5880 |
Gene name | |
Location | Contig_603:7538..8649 |
Strand | - |
Gene length (bp) | 1111 |
Transcript length (bp) | 1005 |
Coding sequence length (bp) | 1005 |
Protein length (aa) | 335 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13874 | Nup54 | Nucleoporin complex subunit 54 | 6.8E-36 | 127 | 262 |
PF18570 | Nup54_57_C | NUP57/Nup54 C-terminal domain | 2.3E-14 | 293 | 319 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|G0S0R2|NUP57_CHATD | Nucleoporin NUP57 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=NUP57 PE=1 SV=1 | 69 | 331 | 5.0E-113 |
sp|O42963|NUP44_SCHPO | Nucleoporin nup44 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup44 PE=2 SV=1 | 82 | 322 | 8.0E-32 |
sp|P48837|NUP57_YEAST | Nucleoporin NUP57 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP57 PE=1 SV=1 | 3 | 277 | 6.0E-26 |
sp|Q8BTS4|NUP54_MOUSE | Nuclear pore complex protein Nup54 OS=Mus musculus GN=Nup54 PE=1 SV=1 | 130 | 322 | 7.0E-08 |
sp|P70582|NUP54_RAT | Nuclear pore complex protein Nup54 OS=Rattus norvegicus GN=Nup54 PE=1 SV=1 | 130 | 322 | 3.0E-07 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|G0S0R2|NUP57_CHATD | Nucleoporin NUP57 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=NUP57 PE=1 SV=1 | 69 | 331 | 5.0E-113 |
sp|O42963|NUP44_SCHPO | Nucleoporin nup44 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup44 PE=2 SV=1 | 82 | 322 | 8.0E-32 |
sp|P48837|NUP57_YEAST | Nucleoporin NUP57 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP57 PE=1 SV=1 | 3 | 277 | 6.0E-26 |
sp|Q8BTS4|NUP54_MOUSE | Nuclear pore complex protein Nup54 OS=Mus musculus GN=Nup54 PE=1 SV=1 | 130 | 322 | 7.0E-08 |
sp|P70582|NUP54_RAT | Nuclear pore complex protein Nup54 OS=Rattus norvegicus GN=Nup54 PE=1 SV=1 | 130 | 322 | 3.0E-07 |
sp|Q7Z3B4|NUP54_HUMAN | Nucleoporin p54 OS=Homo sapiens GN=NUP54 PE=1 SV=2 | 130 | 322 | 4.0E-07 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 18 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophun1|5880 MSLFGQSLSLGSGGLFASTQQQPQPTQQSTNVLGQSLTAGQQPTNTGFAGLQQSQQAQSMPVLAQSAAQLSSSLW QPGKETPHQKPILDQIKLVTDKWDPASPNCVFKHYFYNKVDEAHIPFYKPQPYEDPREWEEALQNKPAPGFMPVV CSGYTGVADRLRTQTRAISDFNTRLHQVNGGLDAILQRHELETEVRALAARRRQTAIGERCLALAARLQVVRNRG YALSGDEDDLKNRLQSLEREVQDPALGAREEELWSRLIVLRGYSDRLDKELDQPAGAEGEALDSETYAKAKRVLE DYDKQLGHLKKELESLGADLEEWDKSHEANPKSR* |
Coding | >Ophun1|5880 ATGTCGCTCTTCGGCCAGTCGCTGAGTCTCGGCTCTGGGGGCCTCTTTGCTTCGACGCAACAGCAGCCGCAGCCC ACGCAACAGAGCACCAATGTCCTGGGCCAGAGCCTGACGGCCGGCCAGCAGCCGACCAATACTGGTTTCGCCGGG CTGCAGCAATCGCAGCAGGCTCAGTCCATGCCCGTCCTCGCGCAGTCGGCCGCCCAGCTTTCCAGCTCACTGTGG CAACCGGGCAAGGAGACTCCGCACCAGAAACCTATCCTCGACCAGATCAAGCTCGTGACGGACAAGTGGGATCCG GCGAGTCCAAACTGCGTATTCAAGCATTACTTTTACAACAAGGTCGACGAGGCACACATCCCCTTCTACAAGCCG CAGCCATACGAGGACCCGCGCGAGTGGGAAGAGGCGCTGCAGAATAAGCCCGCGCCGGGCTTCATGCCCGTAGTC TGCTCGGGCTACACCGGCGTCGCTGATCGCTTACGCACCCAGACGCGGGCCATTTCCGACTTCAACACGCGCCTG CACCAGGTCAACGGCGGCCTCGACGCCATCCTGCAGCGGCACGAGCTCGAAACGGAAGTACGCGCGCTGGCTGCG CGGCGACGGCAGACGGCCATCGGCGAGCGGTGTCTCGCCCTAGCGGCCCGTCTGCAGGTCGTGCGTAACCGAGGA TATGCGCTCAGCGGCGACGAAGACGATCTCAAGAACAGGCTCCAGAGCCTCGAGAGGGAGGTTCAAGACCCGGCG CTGGGAGCTAGAGAGGAGGAGCTGTGGAGCAGGCTCATCGTTCTAAGGGGATACTCAGACCGACTGGACAAGGAG CTGGATCAGCCTGCCGGCGCAGAGGGCGAGGCGCTCGACAGCGAGACATACGCCAAGGCAAAGAGGGTTTTGGAG GACTACGACAAACAGCTGGGACATCTGAAAAAGGAGCTCGAATCCCTCGGTGCCGATCTGGAGGAGTGGGACAAG AGCCACGAGGCGAACCCCAAGTCCAGATGA |
Transcript | >Ophun1|5880 ATGTCGCTCTTCGGCCAGTCGCTGAGTCTCGGCTCTGGGGGCCTCTTTGCTTCGACGCAACAGCAGCCGCAGCCC ACGCAACAGAGCACCAATGTCCTGGGCCAGAGCCTGACGGCCGGCCAGCAGCCGACCAATACTGGTTTCGCCGGG CTGCAGCAATCGCAGCAGGCTCAGTCCATGCCCGTCCTCGCGCAGTCGGCCGCCCAGCTTTCCAGCTCACTGTGG CAACCGGGCAAGGAGACTCCGCACCAGAAACCTATCCTCGACCAGATCAAGCTCGTGACGGACAAGTGGGATCCG GCGAGTCCAAACTGCGTATTCAAGCATTACTTTTACAACAAGGTCGACGAGGCACACATCCCCTTCTACAAGCCG CAGCCATACGAGGACCCGCGCGAGTGGGAAGAGGCGCTGCAGAATAAGCCCGCGCCGGGCTTCATGCCCGTAGTC TGCTCGGGCTACACCGGCGTCGCTGATCGCTTACGCACCCAGACGCGGGCCATTTCCGACTTCAACACGCGCCTG CACCAGGTCAACGGCGGCCTCGACGCCATCCTGCAGCGGCACGAGCTCGAAACGGAAGTACGCGCGCTGGCTGCG CGGCGACGGCAGACGGCCATCGGCGAGCGGTGTCTCGCCCTAGCGGCCCGTCTGCAGGTCGTGCGTAACCGAGGA TATGCGCTCAGCGGCGACGAAGACGATCTCAAGAACAGGCTCCAGAGCCTCGAGAGGGAGGTTCAAGACCCGGCG CTGGGAGCTAGAGAGGAGGAGCTGTGGAGCAGGCTCATCGTTCTAAGGGGATACTCAGACCGACTGGACAAGGAG CTGGATCAGCCTGCCGGCGCAGAGGGCGAGGCGCTCGACAGCGAGACATACGCCAAGGCAAAGAGGGTTTTGGAG GACTACGACAAACAGCTGGGACATCTGAAAAAGGAGCTCGAATCCCTCGGTGCCGATCTGGAGGAGTGGGACAAG AGCCACGAGGCGAACCCCAAGTCCAGATGA |
Gene | >Ophun1|5880 ATGTCGCTCTTCGGCCAGTCGCTGAGTCTCGGCTCTGGGGGCCTCTTTGCTTCGACGCAACAGCAGCCGCAGCCC ACGCAACAGAGCACCAATGTCCTGGGCCAGAGCCTGACGGCCGGCCAGCAGCCGACCAATACTGGTTTCGCCGGG CTGCAGCAATCGCAGCAGGCTCAGTCCATGCCCGTCCTCGCGCAGTCGGCCGCCCAGCTTTCCAGCTCACTGTGG CAACCGGGCAAGGAGACTCCGCGTACGTCGTGTCCGCTGCTGGCCACTCATTCGTGATGCTGACAGGGCTCCAGA CCAGAAACCTATCCTCGACCAGATCAAGCTCGTGACGGACAAGTGGGATCCGGCGAGTCCAAACTGCGTATTCAA GCATTACTTTTACAACAAGGTCGACGAGGCACACATCCCCTTCTACAAGCCGCAGCCATACGAGGACCCGCGCGA GTGGGAAGAGGCGCTGCAGAATAAGCCCGCGCCGGGCTTCATGCCCGTAGTCTGCTCGGGCTACACCGGCGTCGC TGATCGCTTACGCACCCAGACGCGGGCCATTTCCGACTTCAACACGCGCCTGCACCAGGTCAACGGCGGCCTCGA CGCCATCCTGCAGCGGCACGAGCTCGAAACGGAAGTACGCGCGCTGGCTGCGCGGCGACGGCAGACGGCCATCGG CGAGCGGTGTCTCGCCCTAGCGGCCCGTCTGCAGGTCGTGCGTAACCGAGGATATGCGCTCAGCGGCGACGAAGA CGATCTCAAGAACAGGCTCCAGAGCCTCGAGAGGGAGGTTCAAGACCCGGCGCTGGGAGCTAGAGAGGAGGAGCT GTGGAGCAGGCTCATCGTTCTAAGGGGATACTCAGACCGACTGGACAAGGAGCTGGATCAGCCTGCCGGCGCAGA GGGCGAGGCGCTCGACAGCGAGACATACGCCAAGGCAAAGAGGGTGCGCATATCAAGTTACCAGGCTACGATGGG CGGGGCTGACCATGTGACGCAGGTTTTGGAGGACTACGACAAACAGCTGGGACATCTGAAAAAGGAGCTCGAATC CCTCGGTGCCGATCTGGAGGAGTGGGACAAGAGCCACGAGGCGAACCCCAAGTCCAGATGA |