© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|5769 |
| Gene name | |
| Location | Contig_592:2235..2874 |
| Strand | - |
| Gene length (bp) | 639 |
| Transcript length (bp) | 639 |
| Coding sequence length (bp) | 639 |
| Protein length (aa) | 213 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01585 | G-patch | G-patch domain | 1.7E-07 | 117 | 161 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09655|GPAN1_CAEEL | G patch domain and ankyrin repeat-containing protein 1 homolog OS=Caenorhabditis elegans GN=ZK1320.7 PE=3 SV=3 | 72 | 166 | 2.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003676 | nucleic acid binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|5769 MRRARNKRRDNDDDDDDDIPLHRKKPFGAGLKRQRVEFVPASKTDDDVEATTKATSAADLYASIVLNDHGPDPPS TTYQICTICSLPITTSPSQHALSMAHQVSLPQAHPPSALDRSRMGLRTLQSQGWDPDARQGLGLHGDGVRFPLKP EVKRDNRGVGAAPLVRVPVKTEEQRKREAEERRVRVSRLQSELWSRIDVEGYLRGDGRDQEI* |
| Coding | >Ophun1|5769 ATGCGCCGCGCTCGAAACAAGAGACGCGACAACGACGATGACGATGACGATGACATCCCGCTCCATCGCAAGAAG CCGTTTGGAGCCGGCTTGAAGCGTCAAAGGGTTGAATTCGTGCCGGCTTCCAAGACAGACGATGATGTCGAAGCA ACGACAAAGGCCACGTCGGCCGCCGATCTCTACGCAAGCATCGTCCTAAACGACCACGGGCCGGATCCCCCGTCA ACGACTTACCAGATTTGCACGATATGCTCGCTCCCCATCACCACATCGCCATCACAGCACGCCCTATCGATGGCT CACCAAGTCAGCCTCCCGCAGGCGCACCCCCCCTCGGCGCTGGACCGATCGCGCATGGGCCTGCGGACGTTGCAG TCGCAGGGCTGGGACCCGGATGCGCGTCAAGGCTTGGGTTTGCACGGCGACGGCGTCCGCTTCCCGCTGAAGCCC GAGGTCAAGCGCGATAATCGGGGTGTGGGCGCGGCGCCGTTGGTTAGAGTGCCGGTGAAGACGGAGGAGCAGCGG AAGAGGGAGGCTGAGGAGAGGAGGGTGAGGGTTTCGCGGTTGCAGTCGGAGTTGTGGAGTCGCATCGACGTCGAG GGCTATCTTCGTGGCGACGGGAGGGATCAGGAGATTTAG |
| Transcript | >Ophun1|5769 ATGCGCCGCGCTCGAAACAAGAGACGCGACAACGACGATGACGATGACGATGACATCCCGCTCCATCGCAAGAAG CCGTTTGGAGCCGGCTTGAAGCGTCAAAGGGTTGAATTCGTGCCGGCTTCCAAGACAGACGATGATGTCGAAGCA ACGACAAAGGCCACGTCGGCCGCCGATCTCTACGCAAGCATCGTCCTAAACGACCACGGGCCGGATCCCCCGTCA ACGACTTACCAGATTTGCACGATATGCTCGCTCCCCATCACCACATCGCCATCACAGCACGCCCTATCGATGGCT CACCAAGTCAGCCTCCCGCAGGCGCACCCCCCCTCGGCGCTGGACCGATCGCGCATGGGCCTGCGGACGTTGCAG TCGCAGGGCTGGGACCCGGATGCGCGTCAAGGCTTGGGTTTGCACGGCGACGGCGTCCGCTTCCCGCTGAAGCCC GAGGTCAAGCGCGATAATCGGGGTGTGGGCGCGGCGCCGTTGGTTAGAGTGCCGGTGAAGACGGAGGAGCAGCGG AAGAGGGAGGCTGAGGAGAGGAGGGTGAGGGTTTCGCGGTTGCAGTCGGAGTTGTGGAGTCGCATCGACGTCGAG GGCTATCTTCGTGGCGACGGGAGGGATCAGGAGATTTAG |
| Gene | >Ophun1|5769 ATGCGCCGCGCTCGAAACAAGAGACGCGACAACGACGATGACGATGACGATGACATCCCGCTCCATCGCAAGAAG CCGTTTGGAGCCGGCTTGAAGCGTCAAAGGGTTGAATTCGTGCCGGCTTCCAAGACAGACGATGATGTCGAAGCA ACGACAAAGGCCACGTCGGCCGCCGATCTCTACGCAAGCATCGTCCTAAACGACCACGGGCCGGATCCCCCGTCA ACGACTTACCAGATTTGCACGATATGCTCGCTCCCCATCACCACATCGCCATCACAGCACGCCCTATCGATGGCT CACCAAGTCAGCCTCCCGCAGGCGCACCCCCCCTCGGCGCTGGACCGATCGCGCATGGGCCTGCGGACGTTGCAG TCGCAGGGCTGGGACCCGGATGCGCGTCAAGGCTTGGGTTTGCACGGCGACGGCGTCCGCTTCCCGCTGAAGCCC GAGGTCAAGCGCGATAATCGGGGTGTGGGCGCGGCGCCGTTGGTTAGAGTGCCGGTGAAGACGGAGGAGCAGCGG AAGAGGGAGGCTGAGGAGAGGAGGGTGAGGGTTTCGCGGTTGCAGTCGGAGTTGTGGAGTCGCATCGACGTCGAG GGCTATCTTCGTGGCGACGGGAGGGATCAGGAGATTTAG |