Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|5735
Gene name
LocationContig_588:7860..8496
Strand-
Gene length (bp)636
Transcript length (bp)570
Coding sequence length (bp)570
Protein length (aa) 190

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02845 CUE CUE domain 5.7E-10 47 87

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q6BKU8|CUE1_DEBHA Coupling of ubiquitin conjugation to ER degradation protein 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CUE1 PE=3 SV=1 51 183 1.0E-10
sp|P87238|CUE4_SCHPO CUE domain-containing protein 4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4G3.13c PE=3 SV=1 51 184 3.0E-07

GO

GO Term Description Terminal node
GO:0043130 ubiquitin binding Yes
GO:0032182 ubiquitin-like protein binding No
GO:0003674 molecular_function No
GO:0005515 protein binding No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 5 27 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|5735
MANDQISLPYLVAILLLSGLIIRYLFFSGPPVRRLATTSPEALLRSREAAVERIQQMFPQTERRSILWDLQRNGG
SIQSTTERILAGRLDTPPVSFQPPPAPVQATTSSSAESPTRPSEKATQPDLITRYNLKGKLSVPAEEERKPLKGW
SSSRDERQLMLQRRRDEMILAARRKMEAKMAAEKTARGS*
Coding >Ophun1|5735
ATGGCCAACGACCAGATATCGCTGCCGTACCTGGTGGCCATCCTACTGCTGTCGGGACTCATCATCCGCTATCTC
TTCTTCTCGGGTCCGCCGGTGAGGAGACTTGCGACGACATCGCCCGAGGCCCTACTGCGATCGCGAGAGGCGGCG
GTGGAGAGGATTCAGCAGATGTTCCCCCAGACGGAGCGGAGAAGCATCCTGTGGGACCTACAGCGGAACGGCGGG
AGCATCCAGAGCACGACGGAGCGCATTCTCGCTGGCCGTCTTGACACGCCGCCCGTCTCGTTTCAGCCGCCACCA
GCGCCGGTTCAAGCGACGACCAGTTCGAGCGCTGAATCGCCAACACGGCCGTCGGAGAAGGCGACACAGCCGGAC
CTGATTACGCGCTACAATCTCAAGGGGAAGTTGAGTGTGCCGGCCGAGGAGGAGAGGAAGCCGTTAAAGGGCTGG
AGCTCGAGTCGGGACGAGCGTCAACTGATGCTACAGCGGCGGAGGGACGAGATGATCTTGGCAGCGAGGCGCAAG
ATGGAGGCCAAGATGGCGGCAGAGAAGACGGCGCGTGGTAGCTGA
Transcript >Ophun1|5735
ATGGCCAACGACCAGATATCGCTGCCGTACCTGGTGGCCATCCTACTGCTGTCGGGACTCATCATCCGCTATCTC
TTCTTCTCGGGTCCGCCGGTGAGGAGACTTGCGACGACATCGCCCGAGGCCCTACTGCGATCGCGAGAGGCGGCG
GTGGAGAGGATTCAGCAGATGTTCCCCCAGACGGAGCGGAGAAGCATCCTGTGGGACCTACAGCGGAACGGCGGG
AGCATCCAGAGCACGACGGAGCGCATTCTCGCTGGCCGTCTTGACACGCCGCCCGTCTCGTTTCAGCCGCCACCA
GCGCCGGTTCAAGCGACGACCAGTTCGAGCGCTGAATCGCCAACACGGCCGTCGGAGAAGGCGACACAGCCGGAC
CTGATTACGCGCTACAATCTCAAGGGGAAGTTGAGTGTGCCGGCCGAGGAGGAGAGGAAGCCGTTAAAGGGCTGG
AGCTCGAGTCGGGACGAGCGTCAACTGATGCTACAGCGGCGGAGGGACGAGATGATCTTGGCAGCGAGGCGCAAG
ATGGAGGCCAAGATGGCGGCAGAGAAGACGGCGCGTGGTAGCTGA
Gene >Ophun1|5735
ATGGCCAACGACCAGATATCGCTGCCGTACCTGGTGGCCATCCTACTGCTGTCGGGACTCATCATCCGCTATCTC
TTCTTCTCGGGTCCGCCGGTGAGGAGACTTGCGACGACATCGCCCGAGGCCCTACTGCGATCGCGAGAGGCGGCG
GTGGAGAGGATTCAGCAGATGTTCCCCCAGACGGAGCGGAGAAGCATCCTGTGGGACCTACAGCGGAACGGCGGG
AGCATCCAGAGCACGACGGAGCGCATTCTCGCTGGCCGTCTTGACACGGTGAGAGGCTTCCTTAGAGCCAAGCAA
CCCCCTGGTGACGATGGACTGACTCGTGGATGTGACTAGCCGCCCGTCTCGTTTCAGCCGCCACCAGCGCCGGTT
CAAGCGACGACCAGTTCGAGCGCTGAATCGCCAACACGGCCGTCGGAGAAGGCGACACAGCCGGACCTGATTACG
CGCTACAATCTCAAGGGGAAGTTGAGTGTGCCGGCCGAGGAGGAGAGGAAGCCGTTAAAGGGCTGGAGCTCGAGT
CGGGACGAGCGTCAACTGATGCTACAGCGGCGGAGGGACGAGATGATCTTGGCAGCGAGGCGCAAGATGGAGGCC
AAGATGGCGGCAGAGAAGACGGCGCGTGGTAGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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