Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|5638
Gene name
LocationContig_57:21041..23139
Strand+
Gene length (bp)2098
Transcript length (bp)2046
Coding sequence length (bp)2046
Protein length (aa) 682

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04791 LMBR1 LMBR1-like membrane protein 2.7E-103 14 509

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O94599|YC8B_SCHPO LIMR family protein C622.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC622.11 PE=3 SV=1 49 521 8.0E-29
sp|Q54TM2|LMD2B_DICDI LMBR1 domain-containing protein 2 homolog B OS=Dictyostelium discoideum GN=DDB_G0281669 PE=3 SV=1 12 511 4.0E-26
sp|Q7ZYA0|LMBD2_XENLA LMBR1 domain-containing protein 2 OS=Xenopus laevis GN=lmbrd2 PE=2 SV=1 82 617 7.0E-26
sp|Q54Q92|LMD2A_DICDI LMBR1 domain-containing protein 2 homolog A OS=Dictyostelium discoideum GN=DDB_G0284019 PE=3 SV=1 92 516 7.0E-21
sp|Q68DH5|LMBD2_HUMAN LMBR1 domain-containing protein 2 OS=Homo sapiens GN=LMBRD2 PE=2 SV=1 82 617 8.0E-20
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O94599|YC8B_SCHPO LIMR family protein C622.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC622.11 PE=3 SV=1 49 521 8.0E-29
sp|Q54TM2|LMD2B_DICDI LMBR1 domain-containing protein 2 homolog B OS=Dictyostelium discoideum GN=DDB_G0281669 PE=3 SV=1 12 511 4.0E-26
sp|Q7ZYA0|LMBD2_XENLA LMBR1 domain-containing protein 2 OS=Xenopus laevis GN=lmbrd2 PE=2 SV=1 82 617 7.0E-26
sp|Q54Q92|LMD2A_DICDI LMBR1 domain-containing protein 2 homolog A OS=Dictyostelium discoideum GN=DDB_G0284019 PE=3 SV=1 92 516 7.0E-21
sp|Q68DH5|LMBD2_HUMAN LMBR1 domain-containing protein 2 OS=Homo sapiens GN=LMBRD2 PE=2 SV=1 82 617 8.0E-20
sp|Q8MRQ4|LMBD2_DROME LMBR1 domain-containing protein 2 homolog OS=Drosophila melanogaster GN=CG8135 PE=2 SV=2 83 564 4.0E-19
sp|Q6P4P2|LMD2B_DANRE LMBR1 domain-containing protein 2-B OS=Danio rerio GN=lmbrd2b PE=2 SV=1 56 516 1.0E-18
sp|Q29BL9|LMBD2_DROPS LMBR1 domain-containing protein 2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA20843 PE=3 SV=1 65 594 2.0E-18
sp|Q8C561|LMBD2_MOUSE LMBR1 domain-containing protein 2 OS=Mus musculus GN=Lmbrd2 PE=1 SV=1 82 526 1.0E-17
sp|Q5F3F5|LMBD2_CHICK LMBR1 domain-containing protein 2 OS=Gallus gallus GN=LMBRD2 PE=2 SV=1 82 516 6.0E-17
sp|Q61ZW5|LMBD2_CAEBR LMBR1 domain-containing protein 2 homolog OS=Caenorhabditis briggsae GN=CBG02934 PE=3 SV=1 31 374 3.0E-12
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 10 32 22
2 43 65 22
3 89 111 22
4 132 154 22
5 164 186 22
6 352 374 22
7 397 419 22
8 440 462 22
9 492 509 17

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|5638
MPHATSAATPVGSIVFCLLALLVISFGVLLMLRHYLPLRSTPAFYLVPIFFALWLPSIVVILVPVDLASSAATDD
DATKGIWLPQRVILVSWRITYWLTFALTWFILPILAEYSDAGYRDPDDKLKYSLRQNAQFYAIFVLAGLAGFIYT
AVVYKLDFASLKAFVMAASYCWVLIFAIYLMGHGLVSIPRRLIRSASISGSLRRLQAMAPKVHDQMEDSLVALEE
VEEEVLEVRRRKVSSCVEFQDWIEELASLIPKQPSSTTIEPASRTSIPVVMTQKYLADLTRRLTRARHARSRHLD
EWNCLKQQASRMQAILDSAASKSLDFGASSKSILTPYTRYLYYYHVAPRIRLVLGGLLAVASVCILWSELIRFAF
PKLSIIRLSVIHHWVGGKAQVGFAGQTISCLYICYMCAAALVSVTEVKAWRGRALVKRNTAYESAFWYSTQVAKL
CIPLSYNYVTFLTPDVYKKTTFYGFLGEQIESTAPGRWFDDLFPIILLFPVVATLFGLYGRAKRLLFGIDLVDDD
DGDDRSSYGTHSWREGQRLLEQDVDGNTASQRHQDATMRLAAALASRSGPGPVSAAATTAGAGSVGGPRATSPKP
RLPSRQRFSDTEPEDDNILQILGHRMRNTIDTMEPPRWLQEIGEGIKNTDLFPGDGRVGDVDFRRWFGGSGGGEG
GGRIRL*
Coding >Ophun1|5638
ATGCCGCACGCCACCAGCGCCGCGACGCCTGTCGGCTCCATCGTCTTTTGTCTCCTGGCGCTGCTCGTCATCTCC
TTCGGGGTGCTGCTGATGCTACGGCATTACCTTCCGCTCCGCTCGACGCCGGCTTTTTATCTTGTCCCCATATTC
TTTGCCCTGTGGCTTCCATCCATCGTCGTCATCCTCGTGCCCGTGGATCTCGCGTCGAGCGCGGCAACCGACGAT
GATGCTACAAAAGGCATATGGCTTCCTCAGCGTGTCATCCTAGTGTCTTGGAGGATCACGTACTGGCTGACGTTT
GCTCTGACCTGGTTCATTCTTCCCATCCTTGCCGAGTACTCCGATGCCGGTTATCGCGACCCCGACGACAAGCTG
AAATACTCGCTACGACAGAATGCCCAGTTTTACGCAATCTTCGTTCTCGCTGGACTCGCCGGCTTCATCTACACG
GCAGTCGTCTACAAGCTCGACTTTGCGTCGCTCAAAGCCTTTGTCATGGCCGCCTCATACTGCTGGGTCCTCATC
TTTGCCATCTACCTCATGGGTCACGGGCTGGTGTCGATCCCGAGACGCCTGATTCGCAGCGCCAGCATCAGCGGC
AGCTTGCGACGACTACAAGCCATGGCACCCAAGGTTCACGACCAGATGGAAGACTCGCTCGTCGCGCTCGAGGAG
GTGGAGGAGGAGGTCCTCGAGGTCCGACGGCGCAAGGTCAGCAGCTGTGTGGAGTTTCAAGACTGGATAGAGGAG
CTCGCCAGCCTCATCCCCAAGCAACCATCATCGACGACCATCGAGCCCGCAAGCCGAACCTCGATTCCCGTCGTC
ATGACGCAGAAATATCTGGCCGATCTTACGAGACGACTCACTCGCGCGCGTCACGCGAGGTCTCGACATCTGGAC
GAGTGGAACTGCTTGAAACAACAGGCATCAAGAATGCAAGCGATCCTAGACTCGGCGGCCTCCAAGAGCCTCGAC
TTTGGCGCATCATCCAAGAGCATACTGACGCCCTACACGCGCTACCTGTATTATTACCACGTCGCTCCTCGCATA
CGCCTGGTCCTAGGCGGTCTTTTGGCGGTGGCGTCCGTCTGCATCCTGTGGTCAGAGCTGATCAGATTTGCGTTT
CCGAAGCTATCCATCATCCGTCTCAGCGTCATCCACCACTGGGTCGGCGGCAAGGCACAGGTTGGGTTCGCGGGC
CAGACGATATCGTGCCTATACATCTGCTACATGTGTGCCGCCGCGCTGGTGTCGGTAACCGAGGTCAAGGCCTGG
CGAGGACGGGCGCTGGTGAAGCGGAACACGGCATACGAGTCGGCGTTTTGGTACTCAACTCAAGTAGCCAAGCTC
TGCATCCCGCTCTCTTACAACTACGTGACGTTTCTCACGCCCGACGTCTACAAGAAGACGACGTTCTACGGATTT
CTCGGCGAGCAGATTGAGTCGACGGCGCCAGGCCGCTGGTTCGATGACTTGTTTCCCATTATCCTTCTTTTCCCT
GTGGTGGCGACGCTGTTTGGCCTGTACGGCAGGGCCAAGCGTCTCTTGTTCGGCATCGACTTGGTTGACGACGAT
GACGGTGATGATCGGTCTAGCTACGGCACTCACTCCTGGCGTGAGGGCCAGCGACTGCTAGAGCAAGACGTCGAC
GGCAATACGGCCTCCCAGCGACACCAAGACGCGACGATGAGACTCGCCGCAGCCCTCGCCAGCCGATCAGGACCG
GGGCCCGTTTCCGCAGCGGCGACAACGGCCGGAGCCGGCAGCGTCGGAGGTCCGCGGGCGACGTCTCCGAAGCCG
AGGCTGCCATCACGACAGCGATTCTCCGACACGGAGCCCGAGGACGATAACATCCTGCAGATTCTCGGGCATCGG
ATGAGGAACACGATTGATACGATGGAGCCGCCGCGGTGGTTGCAGGAGATTGGCGAGGGGATCAAGAATACGGAT
CTGTTTCCTGGGGATGGACGCGTTGGTGACGTTGATTTCCGGCGTTGGTTTGGGGGGAGTGGCGGAGGGGAAGGG
GGGGGGCGGATTCGTCTGTAG
Transcript >Ophun1|5638
ATGCCGCACGCCACCAGCGCCGCGACGCCTGTCGGCTCCATCGTCTTTTGTCTCCTGGCGCTGCTCGTCATCTCC
TTCGGGGTGCTGCTGATGCTACGGCATTACCTTCCGCTCCGCTCGACGCCGGCTTTTTATCTTGTCCCCATATTC
TTTGCCCTGTGGCTTCCATCCATCGTCGTCATCCTCGTGCCCGTGGATCTCGCGTCGAGCGCGGCAACCGACGAT
GATGCTACAAAAGGCATATGGCTTCCTCAGCGTGTCATCCTAGTGTCTTGGAGGATCACGTACTGGCTGACGTTT
GCTCTGACCTGGTTCATTCTTCCCATCCTTGCCGAGTACTCCGATGCCGGTTATCGCGACCCCGACGACAAGCTG
AAATACTCGCTACGACAGAATGCCCAGTTTTACGCAATCTTCGTTCTCGCTGGACTCGCCGGCTTCATCTACACG
GCAGTCGTCTACAAGCTCGACTTTGCGTCGCTCAAAGCCTTTGTCATGGCCGCCTCATACTGCTGGGTCCTCATC
TTTGCCATCTACCTCATGGGTCACGGGCTGGTGTCGATCCCGAGACGCCTGATTCGCAGCGCCAGCATCAGCGGC
AGCTTGCGACGACTACAAGCCATGGCACCCAAGGTTCACGACCAGATGGAAGACTCGCTCGTCGCGCTCGAGGAG
GTGGAGGAGGAGGTCCTCGAGGTCCGACGGCGCAAGGTCAGCAGCTGTGTGGAGTTTCAAGACTGGATAGAGGAG
CTCGCCAGCCTCATCCCCAAGCAACCATCATCGACGACCATCGAGCCCGCAAGCCGAACCTCGATTCCCGTCGTC
ATGACGCAGAAATATCTGGCCGATCTTACGAGACGACTCACTCGCGCGCGTCACGCGAGGTCTCGACATCTGGAC
GAGTGGAACTGCTTGAAACAACAGGCATCAAGAATGCAAGCGATCCTAGACTCGGCGGCCTCCAAGAGCCTCGAC
TTTGGCGCATCATCCAAGAGCATACTGACGCCCTACACGCGCTACCTGTATTATTACCACGTCGCTCCTCGCATA
CGCCTGGTCCTAGGCGGTCTTTTGGCGGTGGCGTCCGTCTGCATCCTGTGGTCAGAGCTGATCAGATTTGCGTTT
CCGAAGCTATCCATCATCCGTCTCAGCGTCATCCACCACTGGGTCGGCGGCAAGGCACAGGTTGGGTTCGCGGGC
CAGACGATATCGTGCCTATACATCTGCTACATGTGTGCCGCCGCGCTGGTGTCGGTAACCGAGGTCAAGGCCTGG
CGAGGACGGGCGCTGGTGAAGCGGAACACGGCATACGAGTCGGCGTTTTGGTACTCAACTCAAGTAGCCAAGCTC
TGCATCCCGCTCTCTTACAACTACGTGACGTTTCTCACGCCCGACGTCTACAAGAAGACGACGTTCTACGGATTT
CTCGGCGAGCAGATTGAGTCGACGGCGCCAGGCCGCTGGTTCGATGACTTGTTTCCCATTATCCTTCTTTTCCCT
GTGGTGGCGACGCTGTTTGGCCTGTACGGCAGGGCCAAGCGTCTCTTGTTCGGCATCGACTTGGTTGACGACGAT
GACGGTGATGATCGGTCTAGCTACGGCACTCACTCCTGGCGTGAGGGCCAGCGACTGCTAGAGCAAGACGTCGAC
GGCAATACGGCCTCCCAGCGACACCAAGACGCGACGATGAGACTCGCCGCAGCCCTCGCCAGCCGATCAGGACCG
GGGCCCGTTTCCGCAGCGGCGACAACGGCCGGAGCCGGCAGCGTCGGAGGTCCGCGGGCGACGTCTCCGAAGCCG
AGGCTGCCATCACGACAGCGATTCTCCGACACGGAGCCCGAGGACGATAACATCCTGCAGATTCTCGGGCATCGG
ATGAGGAACACGATTGATACGATGGAGCCGCCGCGGTGGTTGCAGGAGATTGGCGAGGGGATCAAGAATACGGAT
CTGTTTCCTGGGGATGGACGCGTTGGTGACGTTGATTTCCGGCGTTGGTTTGGGGGGAGTGGCGGAGGGGAAGGG
GGGGGGCGGATTCGTCTGTAG
Gene >Ophun1|5638
ATGCCGCACGCCACCAGCGCCGCGACGCCTGTCGGCTCCATCGTCTTTTGTCTCCTGGCGCTGCTCGTCATCTCC
TTCGGGGTGCTGCTGATGCTACGGCATTACCTTCCGCTCCGCTCGACGCCGGCTTTTTATCTTGTCCCCATATTC
TTTGCCCTGTGGCTTCCATCCATCGTCGTCATCCTCGTGCCCGTGGATCTCGCGTCGAGCGCGGCAACCGACGAT
GATGCTACAAAAGGCATATGGCTTCCTCAGCGTGTCATCCTAGTGTCTTGGAGGATCACGTACTGGCTGACGTTT
GCTCTGACCTGGTATGCGTTGCCAAGCTTCGGCTTCAGTTGGTGATACTGATCTGGGCTTCAGGTTCATTCTTCC
CATCCTTGCCGAGTACTCCGATGCCGGTTATCGCGACCCCGACGACAAGCTGAAATACTCGCTACGACAGAATGC
CCAGTTTTACGCAATCTTCGTTCTCGCTGGACTCGCCGGCTTCATCTACACGGCAGTCGTCTACAAGCTCGACTT
TGCGTCGCTCAAAGCCTTTGTCATGGCCGCCTCATACTGCTGGGTCCTCATCTTTGCCATCTACCTCATGGGTCA
CGGGCTGGTGTCGATCCCGAGACGCCTGATTCGCAGCGCCAGCATCAGCGGCAGCTTGCGACGACTACAAGCCAT
GGCACCCAAGGTTCACGACCAGATGGAAGACTCGCTCGTCGCGCTCGAGGAGGTGGAGGAGGAGGTCCTCGAGGT
CCGACGGCGCAAGGTCAGCAGCTGTGTGGAGTTTCAAGACTGGATAGAGGAGCTCGCCAGCCTCATCCCCAAGCA
ACCATCATCGACGACCATCGAGCCCGCAAGCCGAACCTCGATTCCCGTCGTCATGACGCAGAAATATCTGGCCGA
TCTTACGAGACGACTCACTCGCGCGCGTCACGCGAGGTCTCGACATCTGGACGAGTGGAACTGCTTGAAACAACA
GGCATCAAGAATGCAAGCGATCCTAGACTCGGCGGCCTCCAAGAGCCTCGACTTTGGCGCATCATCCAAGAGCAT
ACTGACGCCCTACACGCGCTACCTGTATTATTACCACGTCGCTCCTCGCATACGCCTGGTCCTAGGCGGTCTTTT
GGCGGTGGCGTCCGTCTGCATCCTGTGGTCAGAGCTGATCAGATTTGCGTTTCCGAAGCTATCCATCATCCGTCT
CAGCGTCATCCACCACTGGGTCGGCGGCAAGGCACAGGTTGGGTTCGCGGGCCAGACGATATCGTGCCTATACAT
CTGCTACATGTGTGCCGCCGCGCTGGTGTCGGTAACCGAGGTCAAGGCCTGGCGAGGACGGGCGCTGGTGAAGCG
GAACACGGCATACGAGTCGGCGTTTTGGTACTCAACTCAAGTAGCCAAGCTCTGCATCCCGCTCTCTTACAACTA
CGTGACGTTTCTCACGCCCGACGTCTACAAGAAGACGACGTTCTACGGATTTCTCGGCGAGCAGATTGAGTCGAC
GGCGCCAGGCCGCTGGTTCGATGACTTGTTTCCCATTATCCTTCTTTTCCCTGTGGTGGCGACGCTGTTTGGCCT
GTACGGCAGGGCCAAGCGTCTCTTGTTCGGCATCGACTTGGTTGACGACGATGACGGTGATGATCGGTCTAGCTA
CGGCACTCACTCCTGGCGTGAGGGCCAGCGACTGCTAGAGCAAGACGTCGACGGCAATACGGCCTCCCAGCGACA
CCAAGACGCGACGATGAGACTCGCCGCAGCCCTCGCCAGCCGATCAGGACCGGGGCCCGTTTCCGCAGCGGCGAC
AACGGCCGGAGCCGGCAGCGTCGGAGGTCCGCGGGCGACGTCTCCGAAGCCGAGGCTGCCATCACGACAGCGATT
CTCCGACACGGAGCCCGAGGACGATAACATCCTGCAGATTCTCGGGCATCGGATGAGGAACACGATTGATACGAT
GGAGCCGCCGCGGTGGTTGCAGGAGATTGGCGAGGGGATCAAGAATACGGATCTGTTTCCTGGGGATGGACGCGT
TGGTGACGTTGATTTCCGGCGTTGGTTTGGGGGGAGTGGCGGAGGGGAAGGGGGGGGGCGGATTCGTCTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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