© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|552 |
| Gene name | |
| Location | Contig_117:25582..26889 |
| Strand | - |
| Gene length (bp) | 1307 |
| Transcript length (bp) | 1245 |
| Coding sequence length (bp) | 1245 |
| Protein length (aa) | 415 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04004 | Leo1 | Leo1-like protein | 1.4E-32 | 84 | 249 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8WVC0|LEO1_HUMAN | RNA polymerase-associated protein LEO1 OS=Homo sapiens GN=LEO1 PE=1 SV=1 | 67 | 290 | 7.0E-09 |
| sp|Q5XJE5|LEO1_MOUSE | RNA polymerase-associated protein LEO1 OS=Mus musculus GN=Leo1 PE=1 SV=2 | 67 | 290 | 7.0E-09 |
| sp|Q6NYV9|LEO1_DANRE | RNA polymerase-associated protein LEO1 OS=Danio rerio GN=leo1 PE=1 SV=1 | 15 | 290 | 1.0E-08 |
| sp|Q641X2|LEO1_RAT | RNA polymerase-associated protein LEO1 OS=Rattus norvegicus GN=Leo1 PE=1 SV=1 | 67 | 290 | 2.0E-08 |
| sp|Q5R4D6|LEO1_PONAB | RNA polymerase-associated protein LEO1 OS=Pongo abelii GN=LEO1 PE=2 SV=1 | 67 | 290 | 2.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8WVC0|LEO1_HUMAN | RNA polymerase-associated protein LEO1 OS=Homo sapiens GN=LEO1 PE=1 SV=1 | 67 | 290 | 7.0E-09 |
| sp|Q5XJE5|LEO1_MOUSE | RNA polymerase-associated protein LEO1 OS=Mus musculus GN=Leo1 PE=1 SV=2 | 67 | 290 | 7.0E-09 |
| sp|Q6NYV9|LEO1_DANRE | RNA polymerase-associated protein LEO1 OS=Danio rerio GN=leo1 PE=1 SV=1 | 15 | 290 | 1.0E-08 |
| sp|Q641X2|LEO1_RAT | RNA polymerase-associated protein LEO1 OS=Rattus norvegicus GN=Leo1 PE=1 SV=1 | 67 | 290 | 2.0E-08 |
| sp|Q5R4D6|LEO1_PONAB | RNA polymerase-associated protein LEO1 OS=Pongo abelii GN=LEO1 PE=2 SV=1 | 67 | 290 | 2.0E-08 |
| sp|Q52KV5|LEO1_XENLA | RNA polymerase-associated protein LEO1 OS=Xenopus laevis GN=leo1 PE=2 SV=1 | 74 | 290 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006368 | transcription elongation from RNA polymerase II promoter | Yes |
| GO:0016593 | Cdc73/Paf1 complex | Yes |
| GO:0016570 | histone modification | Yes |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0019538 | protein metabolic process | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006354 | DNA-templated transcription, elongation | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0008023 | transcription elongation factor complex | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0005575 | cellular_component | No |
| GO:0036211 | protein modification process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|552 MSDSEDPLDAVDEGADDLFGEEDAASPAPRHDDDLASDPDEAADAQNVDDEDAQHLQETRDKVVADIPTYRHRIP KPKDAMLRILRVPKFIKFMPEVYDPDTFEPSEFDVANAKAEQPKAVVRVRRDPTTGELKSNTNMYRWSDGSVTIA VGGEHYDIQKKSLASAPDKPYNELQDGYCYAAAAELDSNLLMTIGHLMEQYNVKPNKAVGDDALSIFADRMAQAS KAMKGEDMIVRTTRDPELQKKQAELAEKERMKAQRRRENAAARMDGGPSRSARGGLSIGDLEGDRRGAATGRKKG ASGPAKTKRRRPEYDSDDDLPQGVGRHEDYDMDDGFLVASDVEEMESGAADEDEEEEDDRLDYAKTDAGRRAKKQ RVAEPEADEDAEGDEIEPMPTDTAGRTRRRNVVDDEDEE* |
| Coding | >Ophun1|552 ATGTCAGACTCGGAAGATCCCCTTGACGCCGTCGACGAAGGCGCCGATGATCTCTTCGGTGAGGAGGACGCCGCC TCGCCCGCGCCCCGTCATGACGATGACCTCGCTTCCGACCCTGACGAGGCGGCCGATGCGCAAAACGTCGACGAC GAAGACGCCCAACACCTTCAGGAGACGCGCGACAAGGTCGTCGCCGACATTCCCACATATCGTCATCGCATCCCC AAGCCAAAGGACGCCATGCTGCGGATACTGCGCGTGCCAAAATTCATAAAGTTCATGCCTGAAGTCTACGATCCA GATACCTTTGAGCCCTCCGAGTTTGACGTCGCCAACGCAAAAGCCGAGCAGCCCAAGGCGGTCGTCCGCGTCCGA CGCGACCCTACCACCGGCGAGCTCAAGAGCAACACAAACATGTATCGCTGGTCTGATGGCTCCGTCACCATTGCC GTAGGCGGAGAGCACTACGACATCCAGAAAAAGTCGCTCGCCTCCGCCCCGGACAAGCCCTACAACGAACTCCAA GACGGATACTGCTACGCCGCGGCCGCCGAGCTCGATAGCAACTTGCTCATGACAATCGGCCATTTGATGGAGCAG TACAATGTCAAGCCCAACAAGGCGGTGGGAGACGACGCCCTGAGCATCTTTGCCGACCGCATGGCCCAGGCCAGC AAGGCGATGAAGGGCGAGGACATGATTGTCCGCACAACGAGGGATCCCGAGCTACAAAAGAAGCAAGCCGAGCTA GCCGAAAAAGAGAGGATGAAGGCCCAACGTCGTCGCGAAAATGCAGCGGCCAGGATGGACGGCGGACCCTCGCGC TCCGCCCGCGGCGGTCTCTCCATAGGAGACCTCGAAGGCGATCGGCGAGGTGCCGCCACGGGGCGCAAGAAGGGA GCTTCAGGTCCGGCCAAGACCAAGCGGCGGCGTCCCGAGTACGACTCAGACGACGACTTGCCGCAGGGCGTGGGA CGACACGAAGACTACGACATGGACGATGGCTTCCTCGTCGCCAGTGACGTCGAGGAGATGGAGAGCGGCGCCGCA GACGAAGACGAAGAAGAAGAAGATGACAGGCTCGACTACGCAAAGACGGATGCAGGCCGCCGCGCCAAAAAGCAG CGCGTCGCCGAACCCGAAGCAGACGAGGACGCCGAGGGAGACGAGATCGAGCCCATGCCCACCGACACCGCAGGC CGGACTCGCAGACGGAACGTGGTGGACGACGAGGACGAAGAGTGA |
| Transcript | >Ophun1|552 ATGTCAGACTCGGAAGATCCCCTTGACGCCGTCGACGAAGGCGCCGATGATCTCTTCGGTGAGGAGGACGCCGCC TCGCCCGCGCCCCGTCATGACGATGACCTCGCTTCCGACCCTGACGAGGCGGCCGATGCGCAAAACGTCGACGAC GAAGACGCCCAACACCTTCAGGAGACGCGCGACAAGGTCGTCGCCGACATTCCCACATATCGTCATCGCATCCCC AAGCCAAAGGACGCCATGCTGCGGATACTGCGCGTGCCAAAATTCATAAAGTTCATGCCTGAAGTCTACGATCCA GATACCTTTGAGCCCTCCGAGTTTGACGTCGCCAACGCAAAAGCCGAGCAGCCCAAGGCGGTCGTCCGCGTCCGA CGCGACCCTACCACCGGCGAGCTCAAGAGCAACACAAACATGTATCGCTGGTCTGATGGCTCCGTCACCATTGCC GTAGGCGGAGAGCACTACGACATCCAGAAAAAGTCGCTCGCCTCCGCCCCGGACAAGCCCTACAACGAACTCCAA GACGGATACTGCTACGCCGCGGCCGCCGAGCTCGATAGCAACTTGCTCATGACAATCGGCCATTTGATGGAGCAG TACAATGTCAAGCCCAACAAGGCGGTGGGAGACGACGCCCTGAGCATCTTTGCCGACCGCATGGCCCAGGCCAGC AAGGCGATGAAGGGCGAGGACATGATTGTCCGCACAACGAGGGATCCCGAGCTACAAAAGAAGCAAGCCGAGCTA GCCGAAAAAGAGAGGATGAAGGCCCAACGTCGTCGCGAAAATGCAGCGGCCAGGATGGACGGCGGACCCTCGCGC TCCGCCCGCGGCGGTCTCTCCATAGGAGACCTCGAAGGCGATCGGCGAGGTGCCGCCACGGGGCGCAAGAAGGGA GCTTCAGGTCCGGCCAAGACCAAGCGGCGGCGTCCCGAGTACGACTCAGACGACGACTTGCCGCAGGGCGTGGGA CGACACGAAGACTACGACATGGACGATGGCTTCCTCGTCGCCAGTGACGTCGAGGAGATGGAGAGCGGCGCCGCA GACGAAGACGAAGAAGAAGAAGATGACAGGCTCGACTACGCAAAGACGGATGCAGGCCGCCGCGCCAAAAAGCAG CGCGTCGCCGAACCCGAAGCAGACGAGGACGCCGAGGGAGACGAGATCGAGCCCATGCCCACCGACACCGCAGGC CGGACTCGCAGACGGAACGTGGTGGACGACGAGGACGAAGAGTGA |
| Gene | >Ophun1|552 ATGTCAGACTCGGAAGATCCCCTTGACGCCGTCGACGAAGGCGCCGATGATCTCTTCGGTGAGGAGGACGCCGCC TCGCCCGCGCCCCGTCATGACGATGACCTCGCTTCCGACCCTGACGAGGCGGCCGATGCGCAAAACGTCGACGAC GAAGACGCCCAACACCTTCAGGAGACGCGCGACAAGGTCGTCGCCGACATTCCCACATATCGTCATCGCATCCCC AAGCCAAAGGACGCCATGGTGAGTCCAAAGCCATCTACACCTCTGCCCGCCGCCATGCTGACCCTTTCCCCGTCT TCCAGCTGCGGATACTGCGCGTGCCAAAATTCATAAAGTTCATGCCTGAAGTCTACGATCCAGATACCTTTGAGC CCTCCGAGTTTGACGTCGCCAACGCAAAAGCCGAGCAGCCCAAGGCGGTCGTCCGCGTCCGACGCGACCCTACCA CCGGCGAGCTCAAGAGCAACACAAACATGTATCGCTGGTCTGATGGCTCCGTCACCATTGCCGTAGGCGGAGAGC ACTACGACATCCAGAAAAAGTCGCTCGCCTCCGCCCCGGACAAGCCCTACAACGAACTCCAAGACGGATACTGCT ACGCCGCGGCCGCCGAGCTCGATAGCAACTTGCTCATGACAATCGGCCATTTGATGGAGCAGTACAATGTCAAGC CCAACAAGGCGGTGGGAGACGACGCCCTGAGCATCTTTGCCGACCGCATGGCCCAGGCCAGCAAGGCGATGAAGG GCGAGGACATGATTGTCCGCACAACGAGGGATCCCGAGCTACAAAAGAAGCAAGCCGAGCTAGCCGAAAAAGAGA GGATGAAGGCCCAACGTCGTCGCGAAAATGCAGCGGCCAGGATGGACGGCGGACCCTCGCGCTCCGCCCGCGGCG GTCTCTCCATAGGAGACCTCGAAGGCGATCGGCGAGGTGCCGCCACGGGGCGCAAGAAGGGAGCTTCAGGTCCGG CCAAGACCAAGCGGCGGCGTCCCGAGTACGACTCAGACGACGACTTGCCGCAGGGCGTGGGACGACACGAAGACT ACGACATGGACGATGGCTTCCTCGTCGCCAGTGACGTCGAGGAGATGGAGAGCGGCGCCGCAGACGAAGACGAAG AAGAAGAAGATGACAGGCTCGACTACGCAAAGACGGATGCAGGCCGCCGCGCCAAAAAGCAGCGCGTCGCCGAAC CCGAAGCAGACGAGGACGCCGAGGGAGACGAGATCGAGCCCATGCCCACCGACACCGCAGGCCGGACTCGCAGAC GGAACGTGGTGGACGACGAGGACGAAGAGTGA |