Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|5402
Gene name
LocationContig_532:975..2637
Strand-
Gene length (bp)1662
Transcript length (bp)1662
Coding sequence length (bp)1662
Protein length (aa) 554

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01694 Rhomboid Rhomboid family 1.2E-23 382 527

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q58EK4|PARL_DANRE Presenilins-associated rhomboid-like protein, mitochondrial OS=Danio rerio GN=parl PE=2 SV=1 337 530 9.0E-20
sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1 305 519 6.0E-17
sp|Q5R5H4|PARL_PONAB Presenilins-associated rhomboid-like protein, mitochondrial OS=Pongo abelii GN=PARL PE=2 SV=1 332 530 1.0E-16
sp|Q2KHV4|PARL_BOVIN Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos taurus GN=PARL PE=2 SV=1 332 530 1.0E-16
sp|Q9H300|PARL_HUMAN Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo sapiens GN=PARL PE=1 SV=2 332 530 2.0E-16
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[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q58EK4|PARL_DANRE Presenilins-associated rhomboid-like protein, mitochondrial OS=Danio rerio GN=parl PE=2 SV=1 337 530 9.0E-20
sp|P53259|PCP1_YEAST Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1 305 519 6.0E-17
sp|Q5R5H4|PARL_PONAB Presenilins-associated rhomboid-like protein, mitochondrial OS=Pongo abelii GN=PARL PE=2 SV=1 332 530 1.0E-16
sp|Q2KHV4|PARL_BOVIN Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos taurus GN=PARL PE=2 SV=1 332 530 1.0E-16
sp|Q9H300|PARL_HUMAN Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo sapiens GN=PARL PE=1 SV=2 332 530 2.0E-16
sp|Q3B8P0|PARL_RAT Presenilins-associated rhomboid-like protein, mitochondrial OS=Rattus norvegicus GN=Parl PE=2 SV=1 332 530 3.0E-16
sp|Q5XJY4|PARL_MOUSE Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus musculus GN=Parl PE=1 SV=1 332 530 8.0E-16
sp|O14364|YOHB_SCHPO Uncharacterized protein C13E7.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13E7.11 PE=4 SV=1 301 521 3.0E-08
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0004252 serine-type endopeptidase activity Yes
GO:0008233 peptidase activity No
GO:0008236 serine-type peptidase activity No
GO:0003674 molecular_function No
GO:0004175 endopeptidase activity No
GO:0140096 catalytic activity, acting on a protein No
GO:0005575 cellular_component No
GO:0003824 catalytic activity No
GO:0016787 hydrolase activity No
GO:0110165 cellular anatomical entity No
GO:0031224 intrinsic component of membrane No
GO:0017171 serine hydrolase activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

Domain # Start End Length
1 299 321 22
2 342 364 22
3 384 406 22
4 419 438 19
5 442 464 22
6 471 493 22
7 508 527 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|5402
MASLLCPRVSRVLLRSVSTSSFSWTILRAPCLPCRRRDEALRPRTRLQQPISRRSLWSLTKKGERVIIRYEELPR
DYRDSKGLAFWRRDLYLGEVRRIFGPDMDTDEGNRLLRILHGRRVAGTLEDPALSVHTARFTARQVADGLAYLRK
TVSVDEVLSAGLRAEDELKLMELEAEKKEKKNKKKPAKTQGAIDKEEVRGEQETGDDVYKPDPVYGRSILDEIRA
RNIAKRKAREKALEEERQATQTAGGDGSVDVVPVTDGDSSRALSDRPREFRSAKLAKYYEEAQSPLKEPPRMTAW
QRIMPSAAVALLTVGLLVGVCAVYEEPTAQYRLFREISASQATVATLVAINVVVFACWRIPPLWKTFNKYMILVV
GKPRAAAVLTSVFSHISLVHLVLNMVPLWFVGTRLHDDLDRAEFLALYVGCGVMGFLSSLVAYTMSGMLVVSTLG
SSGATLGVLSAYLWEARREGFRMFGLPSEGVHGVVLLGLLTAVQLGGLCRASKFKVDFVSHLMGMATGVAGMELI
IRRREAAAAAARRNPRGQGQMRSSEVRP*
Coding >Ophun1|5402
ATGGCCAGCCTGTTGTGTCCTCGGGTCTCGCGCGTCCTTCTGAGGTCCGTCTCAACCAGCAGCTTCTCATGGACG
ATACTGCGGGCGCCGTGCCTCCCCTGTCGGCGCCGTGACGAGGCTCTGCGGCCCAGGACGCGGCTGCAGCAGCCC
ATCAGCCGACGGAGCCTCTGGTCACTGACGAAGAAGGGCGAGCGTGTCATCATCAGATACGAGGAGCTGCCGCGC
GACTACCGTGACAGCAAGGGCCTCGCGTTCTGGCGCAGAGACCTGTATCTGGGCGAGGTCAGGAGGATCTTTGGG
CCGGACATGGACACGGATGAGGGCAATCGACTACTACGCATCCTACACGGCCGAAGAGTCGCCGGAACCCTCGAA
GACCCGGCTTTGTCTGTTCACACGGCCCGCTTCACGGCTCGGCAGGTGGCTGACGGGCTGGCGTACCTGAGAAAG
ACGGTGTCGGTGGACGAGGTGTTGAGTGCGGGACTGAGGGCCGAGGACGAGCTGAAACTCATGGAGCTGGAGGCG
GAGAAGAAGGAGAAGAAGAACAAGAAGAAGCCCGCCAAGACGCAAGGGGCGATCGACAAGGAAGAGGTTCGAGGA
GAACAGGAGACGGGAGATGACGTTTACAAGCCCGACCCCGTCTACGGCCGAAGCATCCTGGACGAGATCCGAGCG
CGCAACATTGCGAAGCGCAAGGCGCGGGAAAAGGCGCTCGAGGAGGAACGACAGGCAACGCAGACGGCAGGCGGC
GACGGCAGCGTGGACGTCGTCCCGGTGACGGATGGCGACTCGTCGCGCGCATTGTCGGACCGGCCGCGGGAATTC
AGGAGCGCCAAACTGGCCAAGTACTACGAGGAGGCGCAGTCGCCGCTCAAGGAGCCGCCGCGGATGACGGCGTGG
CAGAGGATCATGCCATCGGCCGCCGTGGCGCTGCTGACGGTCGGTCTCCTGGTGGGCGTGTGCGCCGTGTACGAG
GAGCCGACGGCGCAGTACCGGCTGTTCCGCGAGATATCGGCGTCACAGGCGACGGTGGCGACGCTGGTGGCCATC
AACGTGGTCGTCTTCGCCTGCTGGCGGATTCCGCCGCTGTGGAAGACGTTTAACAAGTACATGATTCTGGTGGTG
GGCAAGCCGCGGGCGGCGGCGGTCCTGACGAGCGTCTTTTCGCACATATCGCTAGTTCACCTGGTGCTCAACATG
GTGCCGCTGTGGTTCGTCGGCACCCGGCTGCACGACGACCTGGACAGGGCCGAGTTCCTGGCGCTGTACGTCGGC
TGCGGCGTCATGGGCTTCCTCAGCAGCCTGGTGGCCTACACGATGAGCGGGATGCTGGTGGTGTCTACGCTGGGG
TCTTCGGGCGCCACGCTGGGCGTGCTGTCGGCTTACCTGTGGGAGGCCCGGCGAGAGGGCTTCCGCATGTTTGGC
CTGCCGAGCGAGGGGGTCCACGGCGTGGTGCTGCTTGGCTTGTTGACGGCCGTTCAGCTGGGGGGGCTCTGCAGG
GCCAGCAAGTTCAAGGTGGACTTTGTCTCGCACCTGATGGGCATGGCTACGGGGGTGGCCGGCATGGAGTTGATA
ATCCGCCGGAGGGAGGCTGCAGCCGCGGCGGCGAGAAGAAACCCACGAGGCCAAGGCCAGATGAGGTCGAGCGAG
GTACGGCCTTGA
Transcript >Ophun1|5402
ATGGCCAGCCTGTTGTGTCCTCGGGTCTCGCGCGTCCTTCTGAGGTCCGTCTCAACCAGCAGCTTCTCATGGACG
ATACTGCGGGCGCCGTGCCTCCCCTGTCGGCGCCGTGACGAGGCTCTGCGGCCCAGGACGCGGCTGCAGCAGCCC
ATCAGCCGACGGAGCCTCTGGTCACTGACGAAGAAGGGCGAGCGTGTCATCATCAGATACGAGGAGCTGCCGCGC
GACTACCGTGACAGCAAGGGCCTCGCGTTCTGGCGCAGAGACCTGTATCTGGGCGAGGTCAGGAGGATCTTTGGG
CCGGACATGGACACGGATGAGGGCAATCGACTACTACGCATCCTACACGGCCGAAGAGTCGCCGGAACCCTCGAA
GACCCGGCTTTGTCTGTTCACACGGCCCGCTTCACGGCTCGGCAGGTGGCTGACGGGCTGGCGTACCTGAGAAAG
ACGGTGTCGGTGGACGAGGTGTTGAGTGCGGGACTGAGGGCCGAGGACGAGCTGAAACTCATGGAGCTGGAGGCG
GAGAAGAAGGAGAAGAAGAACAAGAAGAAGCCCGCCAAGACGCAAGGGGCGATCGACAAGGAAGAGGTTCGAGGA
GAACAGGAGACGGGAGATGACGTTTACAAGCCCGACCCCGTCTACGGCCGAAGCATCCTGGACGAGATCCGAGCG
CGCAACATTGCGAAGCGCAAGGCGCGGGAAAAGGCGCTCGAGGAGGAACGACAGGCAACGCAGACGGCAGGCGGC
GACGGCAGCGTGGACGTCGTCCCGGTGACGGATGGCGACTCGTCGCGCGCATTGTCGGACCGGCCGCGGGAATTC
AGGAGCGCCAAACTGGCCAAGTACTACGAGGAGGCGCAGTCGCCGCTCAAGGAGCCGCCGCGGATGACGGCGTGG
CAGAGGATCATGCCATCGGCCGCCGTGGCGCTGCTGACGGTCGGTCTCCTGGTGGGCGTGTGCGCCGTGTACGAG
GAGCCGACGGCGCAGTACCGGCTGTTCCGCGAGATATCGGCGTCACAGGCGACGGTGGCGACGCTGGTGGCCATC
AACGTGGTCGTCTTCGCCTGCTGGCGGATTCCGCCGCTGTGGAAGACGTTTAACAAGTACATGATTCTGGTGGTG
GGCAAGCCGCGGGCGGCGGCGGTCCTGACGAGCGTCTTTTCGCACATATCGCTAGTTCACCTGGTGCTCAACATG
GTGCCGCTGTGGTTCGTCGGCACCCGGCTGCACGACGACCTGGACAGGGCCGAGTTCCTGGCGCTGTACGTCGGC
TGCGGCGTCATGGGCTTCCTCAGCAGCCTGGTGGCCTACACGATGAGCGGGATGCTGGTGGTGTCTACGCTGGGG
TCTTCGGGCGCCACGCTGGGCGTGCTGTCGGCTTACCTGTGGGAGGCCCGGCGAGAGGGCTTCCGCATGTTTGGC
CTGCCGAGCGAGGGGGTCCACGGCGTGGTGCTGCTTGGCTTGTTGACGGCCGTTCAGCTGGGGGGGCTCTGCAGG
GCCAGCAAGTTCAAGGTGGACTTTGTCTCGCACCTGATGGGCATGGCTACGGGGGTGGCCGGCATGGAGTTGATA
ATCCGCCGGAGGGAGGCTGCAGCCGCGGCGGCGAGAAGAAACCCACGAGGCCAAGGCCAGATGAGGTCGAGCGAG
GTACGGCCTTGA
Gene >Ophun1|5402
ATGGCCAGCCTGTTGTGTCCTCGGGTCTCGCGCGTCCTTCTGAGGTCCGTCTCAACCAGCAGCTTCTCATGGACG
ATACTGCGGGCGCCGTGCCTCCCCTGTCGGCGCCGTGACGAGGCTCTGCGGCCCAGGACGCGGCTGCAGCAGCCC
ATCAGCCGACGGAGCCTCTGGTCACTGACGAAGAAGGGCGAGCGTGTCATCATCAGATACGAGGAGCTGCCGCGC
GACTACCGTGACAGCAAGGGCCTCGCGTTCTGGCGCAGAGACCTGTATCTGGGCGAGGTCAGGAGGATCTTTGGG
CCGGACATGGACACGGATGAGGGCAATCGACTACTACGCATCCTACACGGCCGAAGAGTCGCCGGAACCCTCGAA
GACCCGGCTTTGTCTGTTCACACGGCCCGCTTCACGGCTCGGCAGGTGGCTGACGGGCTGGCGTACCTGAGAAAG
ACGGTGTCGGTGGACGAGGTGTTGAGTGCGGGACTGAGGGCCGAGGACGAGCTGAAACTCATGGAGCTGGAGGCG
GAGAAGAAGGAGAAGAAGAACAAGAAGAAGCCCGCCAAGACGCAAGGGGCGATCGACAAGGAAGAGGTTCGAGGA
GAACAGGAGACGGGAGATGACGTTTACAAGCCCGACCCCGTCTACGGCCGAAGCATCCTGGACGAGATCCGAGCG
CGCAACATTGCGAAGCGCAAGGCGCGGGAAAAGGCGCTCGAGGAGGAACGACAGGCAACGCAGACGGCAGGCGGC
GACGGCAGCGTGGACGTCGTCCCGGTGACGGATGGCGACTCGTCGCGCGCATTGTCGGACCGGCCGCGGGAATTC
AGGAGCGCCAAACTGGCCAAGTACTACGAGGAGGCGCAGTCGCCGCTCAAGGAGCCGCCGCGGATGACGGCGTGG
CAGAGGATCATGCCATCGGCCGCCGTGGCGCTGCTGACGGTCGGTCTCCTGGTGGGCGTGTGCGCCGTGTACGAG
GAGCCGACGGCGCAGTACCGGCTGTTCCGCGAGATATCGGCGTCACAGGCGACGGTGGCGACGCTGGTGGCCATC
AACGTGGTCGTCTTCGCCTGCTGGCGGATTCCGCCGCTGTGGAAGACGTTTAACAAGTACATGATTCTGGTGGTG
GGCAAGCCGCGGGCGGCGGCGGTCCTGACGAGCGTCTTTTCGCACATATCGCTAGTTCACCTGGTGCTCAACATG
GTGCCGCTGTGGTTCGTCGGCACCCGGCTGCACGACGACCTGGACAGGGCCGAGTTCCTGGCGCTGTACGTCGGC
TGCGGCGTCATGGGCTTCCTCAGCAGCCTGGTGGCCTACACGATGAGCGGGATGCTGGTGGTGTCTACGCTGGGG
TCTTCGGGCGCCACGCTGGGCGTGCTGTCGGCTTACCTGTGGGAGGCCCGGCGAGAGGGCTTCCGCATGTTTGGC
CTGCCGAGCGAGGGGGTCCACGGCGTGGTGCTGCTTGGCTTGTTGACGGCCGTTCAGCTGGGGGGGCTCTGCAGG
GCCAGCAAGTTCAAGGTGGACTTTGTCTCGCACCTGATGGGCATGGCTACGGGGGTGGCCGGCATGGAGTTGATA
ATCCGCCGGAGGGAGGCTGCAGCCGCGGCGGCGAGAAGAAACCCACGAGGCCAAGGCCAGATGAGGTCGAGCGAG
GTACGGCCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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