Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|5344
Gene name
LocationContig_521:4914..6909
Strand-
Gene length (bp)1995
Transcript length (bp)1890
Coding sequence length (bp)1890
Protein length (aa) 630

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02582 DUF155 RMND1/Sif2-Sif3/Mrx10, DUF155 2.2E-52 317 499

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q09877|SIF3_SCHPO Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 57 522 3.0E-84
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 291 554 6.0E-82
sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 289 543 4.0E-50
sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 98 543 4.0E-50
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 5 277 3.0E-26
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q09877|SIF3_SCHPO Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 57 522 3.0E-84
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 291 554 6.0E-82
sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 289 543 4.0E-50
sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 98 543 4.0E-50
sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 5 277 3.0E-26
sp|Q8CI78|RMND1_MOUSE Required for meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Rmnd1 PE=1 SV=1 317 543 4.0E-20
sp|Q9NWS8|RMND1_HUMAN Required for meiotic nuclear division protein 1 homolog OS=Homo sapiens GN=RMND1 PE=1 SV=2 317 543 1.0E-19
sp|Q5RAR5|RMND1_PONAB Required for meiotic nuclear division protein 1 homolog OS=Pongo abelii GN=RMND1 PE=2 SV=1 317 543 8.0E-19
sp|Q05648|MRX10_YEAST MIOREX complex component 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRX10 PE=1 SV=1 317 540 2.0E-16
sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 50 213 8.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 67 0.45

Transmembrane Domains

Domain # Start End Length
1 523 545 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|5344
MSSGKQRPSVLVTDSRQRPNARTRRQDTSSSSSGRTPMRFMTVDNVLQYNSQIPSGQPRGPPAPAQRLLPAAAGT
APGRRVAAVGLPNGQSRTGQSMPSRTTKISEKLVLLPEADPGEEDDAEDEVENEATMARRLQEEDNRPLKDEELD
VLRKRGGIRGKSFAERLPKVQRKDKVSRLTAYCTAQAFKVGATSEFLRKKHEAKTKLYDDCLYVIYALPLLNGTD
GYRVRGRPMLKTPGTGKTMLDLEIERSERRDHYEGYFEDDAYTNPESPDRGSRATPPFGDPSPDDEMHREHDDGF
RSHINRIAPDAKSFAEMFVFSYGVVVFWNFTEHQEKDILADLTFADAQDGISLLTRPFEQDTFETEEFHFEYSAD
VKRPRVFNDMITLMPRSDHMIKLTISHSIAQSTKLCFFEERMSETMLDAQHVPKTLALTGHLNMTRTEIVKILGR
LFKSRVDINLSSNILDVPNFFWDSEPTLHPLYVAVREYLEIDPRIKVLNERCRVFLDLAEILSDSVNDAKMSYIT
WIIIILIVVSILVTVTEVGLRFGMLSKSSDKAKGLAGVAAVSWAGGSSPGAVPEMVLVPPAADVDEIGKLALVLG
LQSNASFDDVQQGIIDLRRAAARRRRWRV*
Coding >Ophun1|5344
ATGTCTTCCGGGAAACAGCGACCATCTGTACTGGTTACGGACTCGAGGCAAAGGCCTAATGCGAGAACGCGACGT
CAGGACACTTCATCGTCGTCCAGCGGCCGGACGCCGATGCGATTCATGACGGTCGATAATGTCCTTCAGTACAAC
TCGCAGATCCCCTCCGGTCAACCGCGGGGTCCGCCCGCGCCCGCTCAGCGGTTACTCCCCGCAGCCGCCGGCACG
GCTCCCGGCCGTCGAGTCGCCGCCGTAGGTCTGCCCAACGGCCAATCACGCACGGGGCAGTCGATGCCATCGAGG
ACGACTAAGATCAGCGAGAAGCTGGTTCTTCTCCCGGAGGCTGACCCTGGCGAAGAAGACGATGCCGAGGACGAG
GTCGAGAACGAGGCGACCATGGCCAGAAGACTGCAGGAGGAGGATAACCGGCCGCTCAAAGACGAAGAGCTGGAT
GTGTTGAGGAAGAGAGGTGGCATCCGCGGCAAAAGCTTTGCGGAAAGGCTTCCTAAAGTGCAGAGGAAAGACAAG
GTCAGCCGTCTGACAGCCTACTGCACGGCTCAGGCGTTCAAGGTCGGCGCCACGTCCGAGTTCCTGAGGAAGAAG
CACGAGGCCAAGACGAAACTCTACGACGACTGCCTCTACGTCATCTACGCTCTACCCTTGCTCAACGGAACCGAC
GGCTACCGGGTCCGCGGCCGGCCCATGCTCAAGACTCCGGGGACAGGCAAAACCATGCTTGATTTGGAGATTGAG
CGAAGCGAGCGTCGAGACCATTATGAAGGATATTTTGAGGACGACGCGTACACAAATCCCGAGAGTCCGGACAGG
GGCAGTCGCGCGACACCACCCTTTGGCGATCCGTCTCCCGACGACGAGATGCACAGGGAGCACGACGACGGGTTC
CGATCGCACATCAATCGCATTGCGCCCGACGCCAAGAGCTTCGCCGAGATGTTTGTCTTCTCCTACGGCGTCGTC
GTGTTCTGGAACTTTACAGAGCACCAGGAAAAGGACATCCTCGCGGACCTGACTTTTGCGGACGCCCAAGACGGC
ATCAGCCTCCTGACCAGGCCGTTTGAGCAAGACACGTTTGAGACGGAAGAGTTCCACTTTGAGTACAGCGCCGAC
GTCAAGCGGCCGCGAGTATTTAACGACATGATTACGCTGATGCCACGATCGGACCACATGATCAAGCTCACCATC
AGTCACTCGATCGCGCAGAGCACCAAGCTTTGTTTCTTTGAGGAGCGGATGAGCGAGACGATGCTGGATGCGCAG
CACGTGCCCAAGACGCTGGCCTTGACCGGGCATCTCAACATGACGAGGACGGAGATTGTCAAGATACTCGGCAGG
CTGTTTAAGAGTCGCGTCGACATTAATCTTTCGTCCAACATTCTCGACGTGCCCAACTTCTTCTGGGATTCGGAA
CCGACACTGCATCCGCTGTACGTGGCGGTGCGCGAGTACCTGGAAATCGATCCTCGTATCAAGGTGCTCAACGAG
CGATGCCGCGTCTTCCTCGACCTGGCCGAGATCCTGTCGGACTCGGTCAACGACGCCAAGATGAGTTACATAACG
TGGATCATCATCATCCTCATCGTCGTCAGCATCCTCGTCACCGTCACCGAAGTCGGGCTACGGTTCGGCATGCTT
AGCAAGAGTTCGGACAAGGCCAAGGGCTTGGCAGGCGTGGCAGCCGTCAGCTGGGCTGGGGGTAGCAGCCCGGGC
GCGGTGCCCGAGATGGTACTCGTCCCCCCGGCGGCGGACGTGGACGAAATAGGGAAGCTCGCGTTGGTGCTCGGC
CTGCAGTCCAACGCCAGCTTCGACGACGTGCAACAGGGCATCATCGACTTGAGGCGGGCGGCGGCGCGTCGACGT
CGTTGGCGAGTCTAG
Transcript >Ophun1|5344
ATGTCTTCCGGGAAACAGCGACCATCTGTACTGGTTACGGACTCGAGGCAAAGGCCTAATGCGAGAACGCGACGT
CAGGACACTTCATCGTCGTCCAGCGGCCGGACGCCGATGCGATTCATGACGGTCGATAATGTCCTTCAGTACAAC
TCGCAGATCCCCTCCGGTCAACCGCGGGGTCCGCCCGCGCCCGCTCAGCGGTTACTCCCCGCAGCCGCCGGCACG
GCTCCCGGCCGTCGAGTCGCCGCCGTAGGTCTGCCCAACGGCCAATCACGCACGGGGCAGTCGATGCCATCGAGG
ACGACTAAGATCAGCGAGAAGCTGGTTCTTCTCCCGGAGGCTGACCCTGGCGAAGAAGACGATGCCGAGGACGAG
GTCGAGAACGAGGCGACCATGGCCAGAAGACTGCAGGAGGAGGATAACCGGCCGCTCAAAGACGAAGAGCTGGAT
GTGTTGAGGAAGAGAGGTGGCATCCGCGGCAAAAGCTTTGCGGAAAGGCTTCCTAAAGTGCAGAGGAAAGACAAG
GTCAGCCGTCTGACAGCCTACTGCACGGCTCAGGCGTTCAAGGTCGGCGCCACGTCCGAGTTCCTGAGGAAGAAG
CACGAGGCCAAGACGAAACTCTACGACGACTGCCTCTACGTCATCTACGCTCTACCCTTGCTCAACGGAACCGAC
GGCTACCGGGTCCGCGGCCGGCCCATGCTCAAGACTCCGGGGACAGGCAAAACCATGCTTGATTTGGAGATTGAG
CGAAGCGAGCGTCGAGACCATTATGAAGGATATTTTGAGGACGACGCGTACACAAATCCCGAGAGTCCGGACAGG
GGCAGTCGCGCGACACCACCCTTTGGCGATCCGTCTCCCGACGACGAGATGCACAGGGAGCACGACGACGGGTTC
CGATCGCACATCAATCGCATTGCGCCCGACGCCAAGAGCTTCGCCGAGATGTTTGTCTTCTCCTACGGCGTCGTC
GTGTTCTGGAACTTTACAGAGCACCAGGAAAAGGACATCCTCGCGGACCTGACTTTTGCGGACGCCCAAGACGGC
ATCAGCCTCCTGACCAGGCCGTTTGAGCAAGACACGTTTGAGACGGAAGAGTTCCACTTTGAGTACAGCGCCGAC
GTCAAGCGGCCGCGAGTATTTAACGACATGATTACGCTGATGCCACGATCGGACCACATGATCAAGCTCACCATC
AGTCACTCGATCGCGCAGAGCACCAAGCTTTGTTTCTTTGAGGAGCGGATGAGCGAGACGATGCTGGATGCGCAG
CACGTGCCCAAGACGCTGGCCTTGACCGGGCATCTCAACATGACGAGGACGGAGATTGTCAAGATACTCGGCAGG
CTGTTTAAGAGTCGCGTCGACATTAATCTTTCGTCCAACATTCTCGACGTGCCCAACTTCTTCTGGGATTCGGAA
CCGACACTGCATCCGCTGTACGTGGCGGTGCGCGAGTACCTGGAAATCGATCCTCGTATCAAGGTGCTCAACGAG
CGATGCCGCGTCTTCCTCGACCTGGCCGAGATCCTGTCGGACTCGGTCAACGACGCCAAGATGAGTTACATAACG
TGGATCATCATCATCCTCATCGTCGTCAGCATCCTCGTCACCGTCACCGAAGTCGGGCTACGGTTCGGCATGCTT
AGCAAGAGTTCGGACAAGGCCAAGGGCTTGGCAGGCGTGGCAGCCGTCAGCTGGGCTGGGGGTAGCAGCCCGGGC
GCGGTGCCCGAGATGGTACTCGTCCCCCCGGCGGCGGACGTGGACGAAATAGGGAAGCTCGCGTTGGTGCTCGGC
CTGCAGTCCAACGCCAGCTTCGACGACGTGCAACAGGGCATCATCGACTTGAGGCGGGCGGCGGCGCGTCGACGT
CGTTGGCGAGTCTAG
Gene >Ophun1|5344
ATGTCTTCCGGGAAACAGCGACCATCTGTACTGGTGCGGCTCGTATTCATGCTTGTCGTCTGACCCTTGGCTAAC
TAGCGCAGGTTACGGACTCGAGGCAAAGGCCTAATGCGAGAACGCGACGTCAGGACACTTCATCGTCGTCCAGCG
GCCGGACGCCGATGCGATTCATGACGGTCGATAATGTCCTTCAGTACAACTCGCAGATCCCCTCCGGTCAACCGC
GGGGTCCGCCCGCGCCCGCTCAGCGGTTACTCCCCGCAGCCGCCGGCACGGCTCCCGGCCGTCGAGTCGCCGCCG
TAGGTCTGCCCAACGGCCAATCACGCACGGGGCAGTCGATGCCATCGAGGACGACTAAGATCAGCGAGAAGCTGG
TTCTTCTCCCGGAGGCTGACCCTGGCGAAGAAGACGATGCCGAGGACGAGGTCGAGAACGAGGCGACCATGGCCA
GAAGACTGCAGGAGGAGGATAACCGGCCGCTCAAAGACGAAGAGCTGGATGTGTTGAGGAAGAGAGGTGGCATCC
GCGGCAAAAGCTTTGCGGAAAGGCTTCCTAAAGTGCAGAGGAAAGACAAGGTCAGCCGTCTGACAGCCTACTGCA
CGGCTCAGGCGTTCAAGGTCGGCGCCACGTCCGAGTTCCTGAGGAAGAAGCACGAGGCCAAGACGAAACTCTACG
ACGACTGCCTCTACGTCATCTACGCTCTACCCTTGCTCAACGGAACCGACGGCTACCGGGTCCGCGGCCGGCCCA
TGCTCAAGACTCCGGGGACAGGCAAAACCATGCTTGATTTGGAGATTGAGCGAAGCGAGCGTCGAGACCATTATG
AAGGATATTTTGAGGACGACGCGTACACAAATCCCGAGAGTCCGGACAGGGGCAGTCGCGCGACACCACCCTTTG
GCGATCCGTCTCCCGACGACGAGATGCACAGGGAGCACGACGACGGGTTCCGATCGCACATCAATCGCATTGCGC
CCGACGCCAAGAGCTTCGCCGAGATGTTTGTCTTCTCCTACGGCGTCGTCGTGTTCTGGAACTTTACAGAGCACC
AGGAAAAGGACATCCTCGCGGACCTGACTTTTGCGGACGCCCAAGACGGCATCAGCCTCCTGACCAGGCCGTTTG
AGCAAGACACGTTTGAGACGGAAGAGTTCCACTTTGAGTACAGCGCCGACGTCAAGCGGCCGCGAGTATTTAACG
ACATGATTACGCTGATGCCACGATCGGACCACATGATCAAGCTCACCATCAGTCACTCGATCGCGCAGAGCACCA
AGCTTTGTTTCTTTGAGGAGCGGATGAGCGAGACGATGCTGGATGCGCAGCACGTGCCCAAGACGCTGGCCTTGA
CCGGGCATCTCAACATGACGAGGACGGAGATTGTCAAGATACTCGGCAGGCTGTTTAAGAGTCGCGTCGACATTA
ATCTTTGTAAGCTGGAAGAGCTGTCAAGGGAGAAGACGACTTGCTGACGAGTTCACTGCAGCGTCCAACATTCTC
GACGTGCCCAACTTCTTCTGGGATTCGGAACCGACACTGCATCCGCTGTACGTGGCGGTGCGCGAGTACCTGGAA
ATCGATCCTCGTATCAAGGTGCTCAACGAGCGATGCCGCGTCTTCCTCGACCTGGCCGAGATCCTGTCGGACTCG
GTCAACGACGCCAAGATGAGTTACATAACGTGGATCATCATCATCCTCATCGTCGTCAGCATCCTCGTCACCGTC
ACCGAAGTCGGGCTACGGTTCGGCATGCTTAGCAAGAGTTCGGACAAGGCCAAGGGCTTGGCAGGCGTGGCAGCC
GTCAGCTGGGCTGGGGGTAGCAGCCCGGGCGCGGTGCCCGAGATGGTACTCGTCCCCCCGGCGGCGGACGTGGAC
GAAATAGGGAAGCTCGCGTTGGTGCTCGGCCTGCAGTCCAACGCCAGCTTCGACGACGTGCAACAGGGCATCATC
GACTTGAGGCGGGCGGCGGCGCGTCGACGTCGTTGGCGAGTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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