© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|5326 |
| Gene name | |
| Location | Contig_52:19787..20418 |
| Strand | - |
| Gene length (bp) | 631 |
| Transcript length (bp) | 540 |
| Coding sequence length (bp) | 540 |
| Protein length (aa) | 180 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04145 | Ctr | Ctr copper transporter family | 3.3E-33 | 20 | 147 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94722|CTR4_SCHPO | Copper transport protein ctr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctr4 PE=1 SV=1 | 11 | 146 | 3.0E-24 |
| sp|Q9P7F9|CTR5_SCHPO | Copper transport protein ctr5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctr5 PE=1 SV=1 | 13 | 146 | 3.0E-24 |
| sp|Q06686|CTR3_YEAST | Copper transport protein CTR3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTR3 PE=1 SV=1 | 6 | 87 | 8.0E-17 |
| sp|P38865|CTR2_YEAST | Copper transport protein CTR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTR2 PE=1 SV=1 | 2 | 145 | 2.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005375 | copper ion transmembrane transporter activity | Yes |
| GO:0035434 | copper ion transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0034220 | ion transmembrane transport | No |
| GO:0051179 | localization | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0000041 | transition metal ion transport | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0009987 | cellular process | No |
| GO:0006810 | transport | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0055085 | transmembrane transport | No |
| GO:0005575 | cellular_component | No |
| GO:0006825 | copper ion transport | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0008150 | biological_process | No |
| GO:0030001 | metal ion transport | No |
| GO:0046915 | transition metal ion transmembrane transporter activity | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 42 | 61 | 19 |
| 2 | 120 | 142 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3582 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|5326 MDHAHMDMGSGDAASCKISMLWNWYTIDACFLSPGWHIRNGGMFAATCLGVIALVVFVELLRRLGKEYDAFILRQ ARRHFADRYADEKSFDSPVVTFRATVPQQLIRSAIHAGTFGGAYIVMLLAMYFNGFVILCIFIGAGLGKFLCDWM ILHIDVDQGRVSDGPHKGSGIEDPSVCCG* |
| Coding | >Ophun1|5326 ATGGACCACGCACACATGGACATGGGCTCCGGCGACGCAGCCAGCTGCAAGATATCGATGCTCTGGAACTGGTAC ACCATCGACGCCTGCTTCCTCTCCCCCGGATGGCATATTCGCAACGGTGGCATGTTCGCCGCTACCTGCCTCGGC GTCATTGCTCTGGTAGTCTTCGTCGAGCTGCTACGCCGGCTGGGAAAGGAGTACGATGCCTTCATCCTGCGGCAA GCGAGGCGGCATTTCGCAGATCGGTATGCCGACGAGAAGAGCTTCGACTCACCCGTCGTCACCTTTCGGGCTACG GTACCGCAGCAGCTCATCCGCTCGGCCATACACGCTGGCACATTTGGCGGTGCCTATATCGTCATGCTGCTGGCC ATGTACTTTAACGGCTTCGTCATTCTGTGCATCTTCATTGGCGCTGGGCTGGGCAAGTTTCTATGCGACTGGATG ATCCTTCATATCGACGTCGACCAGGGGCGGGTTTCTGATGGGCCGCACAAGGGAAGTGGCATCGAGGATCCCAGT GTTTGCTGTGGATGA |
| Transcript | >Ophun1|5326 ATGGACCACGCACACATGGACATGGGCTCCGGCGACGCAGCCAGCTGCAAGATATCGATGCTCTGGAACTGGTAC ACCATCGACGCCTGCTTCCTCTCCCCCGGATGGCATATTCGCAACGGTGGCATGTTCGCCGCTACCTGCCTCGGC GTCATTGCTCTGGTAGTCTTCGTCGAGCTGCTACGCCGGCTGGGAAAGGAGTACGATGCCTTCATCCTGCGGCAA GCGAGGCGGCATTTCGCAGATCGGTATGCCGACGAGAAGAGCTTCGACTCACCCGTCGTCACCTTTCGGGCTACG GTACCGCAGCAGCTCATCCGCTCGGCCATACACGCTGGCACATTTGGCGGTGCCTATATCGTCATGCTGCTGGCC ATGTACTTTAACGGCTTCGTCATTCTGTGCATCTTCATTGGCGCTGGGCTGGGCAAGTTTCTATGCGACTGGATG ATCCTTCATATCGACGTCGACCAGGGGCGGGTTTCTGATGGGCCGCACAAGGGAAGTGGCATCGAGGATCCCAGT GTTTGCTGTGGATGA |
| Gene | >Ophun1|5326 ATGGACCACGCACACATGGACATGGGCTCCGGCGACGCAGCCAGCTGCAAGATATCGGTGAGTCTCTTTCTTTCT TTCTCTCTTTCTCTCTCTCTCTCTCTCTTTAACTCTGTCTGTCTCACGAGCCAAGCTGACTGGAATCAAACAGAT GCTCTGGAACTGGTACACCATCGACGCCTGCTTCCTCTCCCCCGGATGGCATATTCGCAACGGTGGCATGTTCGC CGCTACCTGCCTCGGCGTCATTGCTCTGGTAGTCTTCGTCGAGCTGCTACGCCGGCTGGGAAAGGAGTACGATGC CTTCATCCTGCGGCAAGCGAGGCGGCATTTCGCAGATCGGTATGCCGACGAGAAGAGCTTCGACTCACCCGTCGT CACCTTTCGGGCTACGGTACCGCAGCAGCTCATCCGCTCGGCCATACACGCTGGCACATTTGGCGGTGCCTATAT CGTCATGCTGCTGGCCATGTACTTTAACGGCTTCGTCATTCTGTGCATCTTCATTGGCGCTGGGCTGGGCAAGTT TCTATGCGACTGGATGATCCTTCATATCGACGTCGACCAGGGGCGGGTTTCTGATGGGCCGCACAAGGGAAGTGG CATCGAGGATCCCAGTGTTTGCTGTGGATGA |