© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|5311 |
| Gene name | |
| Location | Contig_518:8014..8958 |
| Strand | - |
| Gene length (bp) | 944 |
| Transcript length (bp) | 885 |
| Coding sequence length (bp) | 885 |
| Protein length (aa) | 295 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09749 | HVSL | Uncharacterised conserved protein | 5.2E-83 | 36 | 278 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7SEZ0|USB1_NEUCR | U6 snRNA phosphodiesterase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=usb1 PE=3 SV=2 | 34 | 283 | 6.0E-58 |
| sp|Q5I0I5|USB1_RAT | U6 snRNA phosphodiesterase OS=Rattus norvegicus GN=Usb1 PE=2 SV=1 | 3 | 279 | 1.0E-10 |
| sp|Q91W78|USB1_MOUSE | U6 snRNA phosphodiesterase OS=Mus musculus GN=Usb1 PE=2 SV=1 | 3 | 279 | 5.0E-10 |
| sp|Q0II50|USB1_BOVIN | U6 snRNA phosphodiesterase OS=Bos taurus GN=USB1 PE=2 SV=1 | 3 | 234 | 2.0E-09 |
| sp|Q6DEF6|USB1_DANRE | U6 snRNA phosphodiesterase OS=Danio rerio GN=usb1 PE=2 SV=1 | 10 | 279 | 2.0E-09 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7SEZ0|USB1_NEUCR | U6 snRNA phosphodiesterase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=usb1 PE=3 SV=2 | 34 | 283 | 6.0E-58 |
| sp|Q5I0I5|USB1_RAT | U6 snRNA phosphodiesterase OS=Rattus norvegicus GN=Usb1 PE=2 SV=1 | 3 | 279 | 1.0E-10 |
| sp|Q91W78|USB1_MOUSE | U6 snRNA phosphodiesterase OS=Mus musculus GN=Usb1 PE=2 SV=1 | 3 | 279 | 5.0E-10 |
| sp|Q0II50|USB1_BOVIN | U6 snRNA phosphodiesterase OS=Bos taurus GN=USB1 PE=2 SV=1 | 3 | 234 | 2.0E-09 |
| sp|Q6DEF6|USB1_DANRE | U6 snRNA phosphodiesterase OS=Danio rerio GN=usb1 PE=2 SV=1 | 10 | 279 | 2.0E-09 |
| sp|Q9BQ65|USB1_HUMAN | U6 snRNA phosphodiesterase OS=Homo sapiens GN=USB1 PE=1 SV=1 | 37 | 279 | 6.0E-08 |
| sp|Q7ZYI9|USB1_XENLA | U6 snRNA phosphodiesterase OS=Xenopus laevis GN=usb1 PE=2 SV=1 | 1 | 279 | 8.0E-08 |
| sp|Q12208|USB1_YEAST | U6 snRNA phosphodiesterase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=USB1 PE=1 SV=1 | 62 | 186 | 1.0E-07 |
| sp|Q9VHB3|USB1_DROME | U6 snRNA phosphodiesterase OS=Drosophila melanogaster GN=CG16790 PE=2 SV=1 | 52 | 272 | 6.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004518 | nuclease activity | Yes |
| GO:0034477 | U6 snRNA 3'-end processing | Yes |
| GO:0044237 | cellular metabolic process | No |
| GO:0034472 | snRNA 3'-end processing | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0003824 | catalytic activity | No |
| GO:0009987 | cellular process | No |
| GO:0006396 | RNA processing | No |
| GO:0008152 | metabolic process | No |
| GO:0016180 | snRNA processing | No |
| GO:0031123 | RNA 3'-end processing | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0016073 | snRNA metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| Orthofinder run ID | 4 |
| Orthogroup | 5729 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|5311 MALVDYPSSSSSSEAGDAHAPKRLKSQQDTKALAMPPLPAAFHDLYASTVRHSVVDDPCLHQGRKRQTPHIPGCW PSHIYIEWHPTPQQHETLSKLLSMVEAEIGRGFKLHRFLTSDLGAPLPLHISLSRPLSLRSADKDAFLDRLTQSI QTSGLGTFPVAPCGLAWYKSPDSDRTFFILRVAAAPKLTNPQLTTLLERCNATANLYGQPTLYQKTRGEAVDMAF HVSIAWSFGLPGDEASVETLKLFQHNDLTGLPKMRIDVTAVKAKIGNVVTHIPLAEHGNQPDGTGLALA* |
| Coding | >Ophun1|5311 ATGGCTCTCGTCGACTATCCATCTTCCTCATCCTCTTCAGAGGCTGGAGACGCACACGCGCCCAAGCGCCTCAAG AGTCAACAGGACACCAAGGCTCTGGCCATGCCGCCGCTTCCCGCTGCCTTTCACGATCTCTATGCCTCGACGGTC CGCCACAGCGTCGTCGATGATCCCTGCCTGCATCAAGGCCGCAAGAGACAGACCCCTCACATTCCCGGCTGCTGG CCGTCACACATCTACATCGAGTGGCATCCGACGCCGCAGCAGCACGAGACGCTCAGCAAGCTGCTGTCCATGGTC GAGGCCGAGATAGGCCGCGGTTTCAAGCTCCACCGCTTCCTCACCAGCGACCTCGGCGCGCCTCTGCCCCTGCAC ATCAGTCTTTCGCGTCCCCTGAGCCTGCGCTCCGCCGACAAGGACGCCTTCCTCGACCGACTGACGCAGTCGATC CAGACATCCGGACTCGGCACCTTTCCCGTCGCTCCCTGCGGCCTGGCCTGGTACAAATCTCCCGACTCGGACCGA ACGTTTTTCATCCTCCGCGTCGCGGCGGCACCCAAGTTGACGAACCCGCAGCTGACGACGCTCCTTGAGCGTTGC AACGCCACGGCCAACTTGTACGGCCAGCCCACGCTCTACCAGAAGACGCGTGGCGAGGCCGTCGACATGGCCTTC CACGTCTCCATCGCCTGGTCGTTTGGCCTGCCCGGCGATGAGGCGTCAGTCGAGACGCTCAAGCTCTTCCAGCAC AACGACTTGACTGGTCTGCCCAAGATGCGCATCGACGTAACGGCAGTAAAGGCCAAGATAGGCAATGTCGTGACT CACATTCCTCTGGCCGAACACGGGAACCAGCCTGATGGTACCGGGCTCGCTCTCGCCTGA |
| Transcript | >Ophun1|5311 ATGGCTCTCGTCGACTATCCATCTTCCTCATCCTCTTCAGAGGCTGGAGACGCACACGCGCCCAAGCGCCTCAAG AGTCAACAGGACACCAAGGCTCTGGCCATGCCGCCGCTTCCCGCTGCCTTTCACGATCTCTATGCCTCGACGGTC CGCCACAGCGTCGTCGATGATCCCTGCCTGCATCAAGGCCGCAAGAGACAGACCCCTCACATTCCCGGCTGCTGG CCGTCACACATCTACATCGAGTGGCATCCGACGCCGCAGCAGCACGAGACGCTCAGCAAGCTGCTGTCCATGGTC GAGGCCGAGATAGGCCGCGGTTTCAAGCTCCACCGCTTCCTCACCAGCGACCTCGGCGCGCCTCTGCCCCTGCAC ATCAGTCTTTCGCGTCCCCTGAGCCTGCGCTCCGCCGACAAGGACGCCTTCCTCGACCGACTGACGCAGTCGATC CAGACATCCGGACTCGGCACCTTTCCCGTCGCTCCCTGCGGCCTGGCCTGGTACAAATCTCCCGACTCGGACCGA ACGTTTTTCATCCTCCGCGTCGCGGCGGCACCCAAGTTGACGAACCCGCAGCTGACGACGCTCCTTGAGCGTTGC AACGCCACGGCCAACTTGTACGGCCAGCCCACGCTCTACCAGAAGACGCGTGGCGAGGCCGTCGACATGGCCTTC CACGTCTCCATCGCCTGGTCGTTTGGCCTGCCCGGCGATGAGGCGTCAGTCGAGACGCTCAAGCTCTTCCAGCAC AACGACTTGACTGGTCTGCCCAAGATGCGCATCGACGTAACGGCAGTAAAGGCCAAGATAGGCAATGTCGTGACT CACATTCCTCTGGCCGAACACGGGAACCAGCCTGATGGTACCGGGCTCGCTCTCGCCTGA |
| Gene | >Ophun1|5311 ATGGCTCTCGTCGACTATCCATCTTCCTCATCCTCTTCAGAGGCTGGAGACGCACACGCGCCCAAGCGCCTCAAG AGTCAACAGGACACCAAGGCTCTGGCCATGCCGCCGCTTCCCGCTGCCTTTCACGATCTCTATGCCTCGACGGTC CGCCACAGCGTCGTCGATGATCCCTGCCTGCATCAAGGCCGCAAGAGACAGACCCCTCACATTCCCGGCTGCTGG CCGTCACACATCTACATCGAGTGTGCCGTCTGCTCCGCTCCGCCTTCCAGTTCCCCTTCGGCTTCTGACGATGCT CTACAGGGCATCCGACGCCGCAGCAGCACGAGACGCTCAGCAAGCTGCTGTCCATGGTCGAGGCCGAGATAGGCC GCGGTTTCAAGCTCCACCGCTTCCTCACCAGCGACCTCGGCGCGCCTCTGCCCCTGCACATCAGTCTTTCGCGTC CCCTGAGCCTGCGCTCCGCCGACAAGGACGCCTTCCTCGACCGACTGACGCAGTCGATCCAGACATCCGGACTCG GCACCTTTCCCGTCGCTCCCTGCGGCCTGGCCTGGTACAAATCTCCCGACTCGGACCGAACGTTTTTCATCCTCC GCGTCGCGGCGGCACCCAAGTTGACGAACCCGCAGCTGACGACGCTCCTTGAGCGTTGCAACGCCACGGCCAACT TGTACGGCCAGCCCACGCTCTACCAGAAGACGCGTGGCGAGGCCGTCGACATGGCCTTCCACGTCTCCATCGCCT GGTCGTTTGGCCTGCCCGGCGATGAGGCGTCAGTCGAGACGCTCAAGCTCTTCCAGCACAACGACTTGACTGGTC TGCCCAAGATGCGCATCGACGTAACGGCAGTAAAGGCCAAGATAGGCAATGTCGTGACTCACATTCCTCTGGCCG AACACGGGAACCAGCCTGATGGTACCGGGCTCGCTCTCGCCTGA |