© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|5173 |
| Gene name | |
| Location | Contig_5:47606..49146 |
| Strand | - |
| Gene length (bp) | 1540 |
| Transcript length (bp) | 1359 |
| Coding sequence length (bp) | 1359 |
| Protein length (aa) | 453 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16010 | CDH-cyt | Cytochrome domain of cellobiose dehydrogenase | 3.9E-22 | 20 | 181 |
| PF03188 | Cytochrom_B561 | Eukaryotic cytochrome b561 | 3.7E-08 | 239 | 337 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q8VYH6|B651B_ARATH | Cytochrome b561 and DOMON domain-containing protein At4g17280 OS=Arabidopsis thaliana GN=At4g17280 PE=2 SV=1 | 213 | 392 | 4.0E-07 |
| sp|Q9SV71|B561O_ARATH | Cytochrome b561 and DOMON domain-containing protein At4g12980 OS=Arabidopsis thaliana GN=At4g12980 PE=2 SV=1 | 208 | 374 | 7.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 217 | 239 | 22 |
| 2 | 246 | 268 | 22 |
| 3 | 278 | 300 | 22 |
| 4 | 320 | 337 | 17 |
| 5 | 347 | 366 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|5173 MRLGLTAALAAAAASALQSTFVSPNRDLAFALSVPDTDNTDIFFSIRAPISYSWAAVGLGSDDMKGALFLIIYRN KHRDNVTLSPRLAYGNYEPQHYPDMQYDVLPGSGIVGDHMVLNARCTQHCRSWPAADSNSGYMDVSSASGKAVFA LGPRTGFGSDSPAADLQFHREFGVFSIDIKRTLGAPDPPELRDDSESVGTSLDYRRTDRREPRSSLHGSFMVFSV VFLLPVGAALRSSGRWARFHSLCQSMAVLIMLAGVATGVLASLRFQRSRNFRAHHQIIGFIVVGFVLAQLVLGFL HQRKMRKTNLPTNYGRYHRYLGVTIIIFGVLNAFFGFDLALDYKMGYTLCGFVIISVFLVLFLYLSRRGVRGRRQ RQTASAADGPSTGYQPQPWREEPNPPDAPPSYEAASSQYISLQPVPSRASPWRGSDVKDGEDDQPALGGLQRPRE FT* |
| Coding | >Ophun1|5173 ATGAGGCTCGGGCTCACGGCCGCTCTGGCCGCAGCAGCGGCCTCGGCTCTTCAGTCAACCTTCGTCTCCCCCAAC CGCGACCTCGCCTTCGCCCTCTCGGTTCCAGACACAGACAACACCGACATCTTCTTCAGCATCCGAGCCCCCATC TCCTATTCCTGGGCCGCCGTCGGTCTCGGCAGCGACGACATGAAGGGCGCCCTCTTCCTCATCATCTACCGCAAC AAGCACCGCGATAACGTCACCCTCTCCCCCCGCCTGGCCTACGGCAACTACGAGCCTCAGCACTACCCAGACATG CAGTACGACGTGCTGCCAGGCTCGGGCATCGTCGGCGATCACATGGTGCTGAATGCCCGGTGCACGCAGCACTGT CGCAGCTGGCCGGCTGCCGATTCGAACAGCGGGTATATGGATGTGTCGTCGGCGTCGGGCAAGGCTGTTTTTGCG CTGGGCCCGCGGACTGGCTTTGGGAGTGATAGCCCGGCTGCTGACTTGCAGTTCCATCGCGAGTTTGGCGTCTTT TCCATTGATATCAAGAGGACGCTTGGTGCTCCGGATCCGCCTGAGTTGAGAGATGACTCTGAGTCTGTGGGGACG TCGTTGGATTACCGCCGCACTGATCGTCGTGAGCCTCGGTCTAGTCTTCACGGCTCTTTCATGGTCTTTTCTGTT GTCTTTCTTTTGCCTGTTGGAGCTGCTTTGCGCAGTTCGGGACGATGGGCTCGCTTCCACTCTCTTTGCCAGTCC ATGGCCGTGCTCATCATGCTGGCTGGCGTCGCTACTGGTGTTCTGGCCAGTCTTCGCTTCCAGAGGTCCCGCAAC TTTCGCGCTCATCATCAGATCATTGGCTTCATCGTCGTCGGCTTCGTCCTCGCTCAGCTCGTCCTTGGCTTCCTT CACCAACGGAAGATGCGCAAGACGAATCTGCCGACAAACTACGGCCGGTATCATCGCTACCTGGGGGTCACCATC ATCATCTTTGGCGTCCTCAATGCCTTCTTTGGCTTCGACCTAGCCCTCGACTACAAAATGGGCTACACGCTCTGC GGCTTCGTCATCATCTCCGTCTTCCTCGTCCTATTCCTCTACCTCAGTCGCCGCGGCGTACGCGGGAGGAGACAG CGGCAGACGGCTTCCGCAGCGGACGGTCCGTCGACGGGATACCAGCCGCAGCCGTGGCGCGAGGAGCCGAATCCG CCGGATGCGCCGCCGAGTTACGAAGCTGCTTCTTCGCAGTACATCAGTCTGCAGCCGGTTCCCTCGCGGGCTTCC CCTTGGCGGGGCTCGGATGTCAAGGATGGGGAGGATGATCAGCCGGCTTTGGGTGGTTTGCAGCGGCCTAGGGAG TTTACGTAG |
| Transcript | >Ophun1|5173 ATGAGGCTCGGGCTCACGGCCGCTCTGGCCGCAGCAGCGGCCTCGGCTCTTCAGTCAACCTTCGTCTCCCCCAAC CGCGACCTCGCCTTCGCCCTCTCGGTTCCAGACACAGACAACACCGACATCTTCTTCAGCATCCGAGCCCCCATC TCCTATTCCTGGGCCGCCGTCGGTCTCGGCAGCGACGACATGAAGGGCGCCCTCTTCCTCATCATCTACCGCAAC AAGCACCGCGATAACGTCACCCTCTCCCCCCGCCTGGCCTACGGCAACTACGAGCCTCAGCACTACCCAGACATG CAGTACGACGTGCTGCCAGGCTCGGGCATCGTCGGCGATCACATGGTGCTGAATGCCCGGTGCACGCAGCACTGT CGCAGCTGGCCGGCTGCCGATTCGAACAGCGGGTATATGGATGTGTCGTCGGCGTCGGGCAAGGCTGTTTTTGCG CTGGGCCCGCGGACTGGCTTTGGGAGTGATAGCCCGGCTGCTGACTTGCAGTTCCATCGCGAGTTTGGCGTCTTT TCCATTGATATCAAGAGGACGCTTGGTGCTCCGGATCCGCCTGAGTTGAGAGATGACTCTGAGTCTGTGGGGACG TCGTTGGATTACCGCCGCACTGATCGTCGTGAGCCTCGGTCTAGTCTTCACGGCTCTTTCATGGTCTTTTCTGTT GTCTTTCTTTTGCCTGTTGGAGCTGCTTTGCGCAGTTCGGGACGATGGGCTCGCTTCCACTCTCTTTGCCAGTCC ATGGCCGTGCTCATCATGCTGGCTGGCGTCGCTACTGGTGTTCTGGCCAGTCTTCGCTTCCAGAGGTCCCGCAAC TTTCGCGCTCATCATCAGATCATTGGCTTCATCGTCGTCGGCTTCGTCCTCGCTCAGCTCGTCCTTGGCTTCCTT CACCAACGGAAGATGCGCAAGACGAATCTGCCGACAAACTACGGCCGGTATCATCGCTACCTGGGGGTCACCATC ATCATCTTTGGCGTCCTCAATGCCTTCTTTGGCTTCGACCTAGCCCTCGACTACAAAATGGGCTACACGCTCTGC GGCTTCGTCATCATCTCCGTCTTCCTCGTCCTATTCCTCTACCTCAGTCGCCGCGGCGTACGCGGGAGGAGACAG CGGCAGACGGCTTCCGCAGCGGACGGTCCGTCGACGGGATACCAGCCGCAGCCGTGGCGCGAGGAGCCGAATCCG CCGGATGCGCCGCCGAGTTACGAAGCTGCTTCTTCGCAGTACATCAGTCTGCAGCCGGTTCCCTCGCGGGCTTCC CCTTGGCGGGGCTCGGATGTCAAGGATGGGGAGGATGATCAGCCGGCTTTGGGTGGTTTGCAGCGGCCTAGGGAG TTTACGTAG |
| Gene | >Ophun1|5173 ATGAGGCTCGGGCTCACGGCCGCTCTGGCCGCAGCAGGTAAGACACCAGCTTCAGACGGAGATGACGATGACGAT GGCTGATCTCGAACCTCTTCTACCAATACAGCGGCCTCGGCTCTTCAGTCAACCTTCGTCTCCCCCAACCGCGAC CTCGCCTTCGCCCTCTCGGTTCCAGACACAGACAACACCGACATCTTCTTCAGCATCCGAGCCCCCATCTCCTAT TCCTGGGCCGCCGTCGGTCTCGGCAGCGACGACATGAAGGGCGCCCTCTTCCTCATCATCTACCGCAACAAGCAC CGCGATAACGTCACCCTCTCCCCCCGCCTGGCCTACGGCAACTACGAGCCTCAGCACTACCCAGACATGCAGTAC GACGTGCTGCCAGGCTCGGGCATCGTCGGCGATCACATGGTGCTGAATGCCCGGTGCACGCAGCACTGTCGCAGC TGGCCGGCTGCCGATTCGAACAGCGGGTATATGGATGTGTCGTCGGCGTCGGGCAAGGCTGTTTTTGCGCTGGGC CCGCGGACTGGCTTTGGGAGTGATAGCCCGGCTGCTGACTTGCAGTTCCATCGCGAGTTTGGCGTCTTTTCCATT GATATCAAGAGGACGCTTGGTGCTCCGGATCCGCCTGAGTTGAGAGATGACTCTGAGTCTGTGGGGACGTCGTTG GATTACCGCCGCACTGATCGTCGTGAGCCTCGGTCTAGTCTTCACGGCTCTTTCATGGTCTTTTCTGTTGTCTTT CTTTTGCCTGTTGGAGCTGCTTTGCGCAGTTCGGGACGATGGGCTCGCTTCCACTCTCTTTGCCAGTCCATGGCC GTGCTCATCATGCTGGCTGGCGTCGCTACTGGTGTTCTGGCCAGTCTTCGCTTCCAGAGGGTGCGTCTGATGGTC ATACTACTTTCTGGATGTTCTACTCACGGTTGTCTAGTCCCGCAACTTTCGCGCTCATCATCAGATCATTGGCTT CATCGTCGTCGGCTTCGTCCTCGCTCAGCTCGTCCTTGGCTTCCTTCACCAACGGAAGATGCGCAAGACGAATCT GCCGACAAACTACGGCCGGTATCATCGCTACCTGGGGGTCACCATCATCATCTTTGGCGTCCTCAATGCCTTCTT GTGCGTCTCCCCCACAGATCCCCTTCTGAAGAATCTCTCGCTCACGCTACAGCCTCACAGTGGCTTCGACCTAGC CCTCGACTACAAAATGGGCTACACGCTCTGCGGCTTCGTCATCATCTCCGTCTTCCTCGTCCTATTCCTCTACCT CAGTCGCCGCGGCGTACGCGGGAGGAGACAGCGGCAGACGGCTTCCGCAGCGGACGGTCCGTCGACGGGATACCA GCCGCAGCCGTGGCGCGAGGAGCCGAATCCGCCGGATGCGCCGCCGAGTTACGAAGCTGCTTCTTCGCAGTACAT CAGTCTGCAGCCGGTTCCCTCGCGGGCTTCCCCTTGGCGGGGCTCGGATGTCAAGGATGGGGAGGATGATCAGCC GGCTTTGGGTGGTTTGCAGCGGCCTAGGGAGTTTACGTAG |