Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|5169
Gene name
LocationContig_5:41067..42127
Strand-
Gene length (bp)1060
Transcript length (bp)885
Coding sequence length (bp)885
Protein length (aa) 295

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04733 Coatomer_E Coatomer epsilon subunit 4.8E-62 9 288

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q60445|COPE_CRIGR Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2 9 290 9.0E-33
sp|Q9SA78|COPE1_ARATH Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1 9 271 1.0E-32
sp|Q5ZIK9|COPE_CHICK Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1 9 290 2.0E-31
sp|Q9MAX6|COPE1_ORYSJ Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1 PE=2 SV=1 10 271 3.0E-31
sp|Q28104|COPE_BOVIN Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3 9 290 3.0E-31
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[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q60445|COPE_CRIGR Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2 9 290 9.0E-33
sp|Q9SA78|COPE1_ARATH Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1 9 271 1.0E-32
sp|Q5ZIK9|COPE_CHICK Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1 9 290 2.0E-31
sp|Q9MAX6|COPE1_ORYSJ Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1 PE=2 SV=1 10 271 3.0E-31
sp|Q28104|COPE_BOVIN Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3 9 290 3.0E-31
sp|O89079|COPE_MOUSE Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=1 SV=3 9 290 9.0E-31
sp|Q5RFR8|COPE_PONAB Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1 9 290 1.0E-30
sp|O64748|COPE2_ARATH Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840 PE=2 SV=1 9 271 1.0E-30
sp|O14579|COPE_HUMAN Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3 9 290 2.0E-30
sp|P0C541|COPE2_ORYSJ Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica GN=Os04g0644700 PE=3 SV=1 9 283 5.0E-30
sp|A2XY73|COPE2_ORYSI Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica GN=H0413E07.10 PE=3 SV=2 9 283 3.0E-29
sp|O74767|COPE_SCHPO Probable coatomer subunit epsilon OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec28 PE=1 SV=1 5 288 2.0E-27
sp|O62246|COPE_CAEEL Coatomer subunit epsilon OS=Caenorhabditis elegans GN=cope-1 PE=3 SV=1 9 286 3.0E-18
sp|Q55FU2|COPE_DICDI Coatomer subunit epsilon OS=Dictyostelium discoideum GN=cope PE=3 SV=1 15 289 2.0E-15
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 56 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|5169
MDPYSAEGELINLHNYFHQGQYQEAIDFDTSALSPDNALPARVLQLRARIALGEADEVLSEVKNASEPDIEAIAA
LAELALGKGPAAVQRVEKLVSSAADNATVQVVGGTVLQAAGKSDEALALLSQHQSSLEAVALIVQIQLQQNRSDL
AIKEVAAARRWAQDSLLVNLAEAWVGLRVGGDKYQQSFYVYEELAQAPATASIRSLVSQAVCELHMGRLEEAQVA
LEQALKKDPQYVDAIANMLVLKVLSGSDASGFAASLEKTGPDHALIVDLKEKSALFDKVAAKYSPKVAS*
Coding >Ophun1|5169
ATGGATCCCTACTCTGCTGAAGGCGAGCTGATTAATCTTCACAATTATTTTCACCAAGGCCAGTATCAAGAAGCC
ATCGACTTCGACACCTCAGCCCTCTCGCCGGACAATGCACTCCCCGCCCGCGTGCTACAGCTGCGTGCGCGCATC
GCCCTGGGCGAAGCGGACGAGGTCCTTTCCGAGGTGAAGAACGCCTCGGAACCCGATATCGAGGCCATAGCCGCC
TTGGCTGAGCTTGCGCTGGGGAAGGGTCCTGCCGCCGTGCAGCGGGTTGAGAAGCTGGTTTCCTCGGCTGCGGAT
AACGCTACAGTTCAGGTTGTTGGTGGGACGGTGCTGCAGGCTGCTGGCAAGTCGGACGAGGCGCTGGCGCTGCTT
TCGCAACATCAGTCCAGTCTCGAGGCTGTTGCCTTGATCGTGCAGATTCAGTTGCAGCAGAACCGGTCTGATCTT
GCCATCAAGGAGGTCGCCGCCGCTCGGAGATGGGCTCAGGATAGTCTTTTGGTGAACCTGGCCGAGGCGTGGGTT
GGCTTGCGCGTTGGCGGCGACAAGTATCAGCAGTCGTTCTACGTCTACGAAGAACTCGCGCAAGCCCCAGCTACG
GCATCGATCCGCAGTCTCGTTTCCCAGGCGGTCTGCGAGCTGCACATGGGCCGACTGGAAGAAGCACAGGTAGCG
CTGGAGCAGGCGCTAAAGAAGGATCCCCAATACGTCGACGCCATTGCCAACATGCTGGTTCTAAAAGTCCTGTCC
GGAAGTGATGCTTCCGGATTTGCTGCATCGCTGGAGAAGACTGGGCCGGATCACGCACTGATCGTGGACCTCAAG
GAGAAGAGCGCGCTGTTTGACAAGGTGGCGGCCAAGTACAGCCCCAAGGTTGCGTCTTGA
Transcript >Ophun1|5169
ATGGATCCCTACTCTGCTGAAGGCGAGCTGATTAATCTTCACAATTATTTTCACCAAGGCCAGTATCAAGAAGCC
ATCGACTTCGACACCTCAGCCCTCTCGCCGGACAATGCACTCCCCGCCCGCGTGCTACAGCTGCGTGCGCGCATC
GCCCTGGGCGAAGCGGACGAGGTCCTTTCCGAGGTGAAGAACGCCTCGGAACCCGATATCGAGGCCATAGCCGCC
TTGGCTGAGCTTGCGCTGGGGAAGGGTCCTGCCGCCGTGCAGCGGGTTGAGAAGCTGGTTTCCTCGGCTGCGGAT
AACGCTACAGTTCAGGTTGTTGGTGGGACGGTGCTGCAGGCTGCTGGCAAGTCGGACGAGGCGCTGGCGCTGCTT
TCGCAACATCAGTCCAGTCTCGAGGCTGTTGCCTTGATCGTGCAGATTCAGTTGCAGCAGAACCGGTCTGATCTT
GCCATCAAGGAGGTCGCCGCCGCTCGGAGATGGGCTCAGGATAGTCTTTTGGTGAACCTGGCCGAGGCGTGGGTT
GGCTTGCGCGTTGGCGGCGACAAGTATCAGCAGTCGTTCTACGTCTACGAAGAACTCGCGCAAGCCCCAGCTACG
GCATCGATCCGCAGTCTCGTTTCCCAGGCGGTCTGCGAGCTGCACATGGGCCGACTGGAAGAAGCACAGGTAGCG
CTGGAGCAGGCGCTAAAGAAGGATCCCCAATACGTCGACGCCATTGCCAACATGCTGGTTCTAAAAGTCCTGTCC
GGAAGTGATGCTTCCGGATTTGCTGCATCGCTGGAGAAGACTGGGCCGGATCACGCACTGATCGTGGACCTCAAG
GAGAAGAGCGCGCTGTTTGACAAGGTGGCGGCCAAGTACAGCCCCAAGGTTGCGTCTTGA
Gene >Ophun1|5169
ATGGATCCCTACTCTGCTGAAGGCGAGCTGATTAATCTTCACAATTATTTTCACCAAGGCCAGTATCAAGAAGCC
ATCGACTTCGACACCTCAGCCCTCTCGCCGGACAATGCACTCCCCGCCCGCGTGCTACAGCTGCGTGCGCGCATC
GCCCTGGGCGAAGCGGACGAGGTCCTTTCCGAGGTGAAGAACGCCTCGGAACCCGATATCGAGGCCATAGCCGCC
TTGGCTGAGCTTGCGCTGGGGAAGGGTCCTGCCGCCGTGCAGCGGGTTGAGAAGCTGGTTTCCTCGGCTGCGGAT
AACGCTACAGTTCAGGTTGTTGGTGGGACGGTGCTGCAGGCTGCTGGCAAGTCGGACGAGGCGCTGGCGCTGCTT
TCGCAACATCAGTCCAGTCGTGAGTTTCTCTGGGATGGGGCGAGGCTGGGTGGGTGAGAGCGTTCAGCTGACTGG
TTGTCTGCAGTCGAGGCTGTTGCCTTGATCGTGCAGATTCAGTTGCAGCAGAACCGGTCTGATCTTGCCATCAAG
GAGGTCGCCGCCGCTCGGAGATGGGCTCAGGATAGTCTTTTGGTGAACCTGGCCGAGGCGTGGGTTGGCTTGCGC
GTTGTGAGCCGATCCTTCATTACTTTCACATGTCATCGCAATGGACTGACGAATTGCAGGGCGGCGACAAGTATC
AGCAGTCGTTCTACGTCTACGAAGAACTCGCGCAAGCCCCAGCTACGGCATCGATCCGCAGTCTCGTTTCCCAGG
CGGTCTGCGAGCTGCACATGGGCCGACTGGAAGAAGCACAGGTAGCGCTGGAGCAGGCGCTAAAGAAGGATCCCC
AATACGTCGACGCCATTGCCAACATGCTGGTTCTAAAAGTCCTGTCCGGAAGTGATGCTTCCGGATTTGCTGCGT
AAGTGGACGCCCAGCTCAACTTATACTTCGAGATTGCTGATGCACCACCAGATCGCTGGAGAAGACTGGGCCGGA
TCACGCACTGATCGTGGACCTCAAGGAGAAGAGCGCGCTGTTTGACAAGGTGGCGGCCAAGTACAGCCCCAAGGT
TGCGTCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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