Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|5144
Gene name
LocationContig_499:2966..3913
Strand-
Gene length (bp)947
Transcript length (bp)879
Coding sequence length (bp)879
Protein length (aa) 293

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e 8.2E-20 124 253

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O74464|RM22_SCHPO 54S ribosomal protein L22, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl22 PE=3 SV=1 123 292 5.0E-13
sp|P53881|RM22_YEAST 54S ribosomal protein L22, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL22 PE=1 SV=2 106 285 1.0E-06

GO

GO Term Description Terminal node
GO:0003735 structural constituent of ribosome Yes
GO:0006412 translation Yes
GO:0005840 ribosome Yes
GO:0043043 peptide biosynthetic process No
GO:0043226 organelle No
GO:0043229 intracellular organelle No
GO:0043170 macromolecule metabolic process No
GO:1901576 organic substance biosynthetic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0019538 protein metabolic process No
GO:0006518 peptide metabolic process No
GO:0008152 metabolic process No
GO:0009058 biosynthetic process No
GO:0009987 cellular process No
GO:0005198 structural molecule activity No
GO:0044238 primary metabolic process No
GO:0044237 cellular metabolic process No
GO:0043232 intracellular non-membrane-bounded organelle No
GO:0006807 nitrogen compound metabolic process No
GO:0110165 cellular anatomical entity No
GO:0043228 non-membrane-bounded organelle No
GO:0005575 cellular_component No
GO:0044249 cellular biosynthetic process No
GO:0003674 molecular_function No
GO:0034641 cellular nitrogen compound metabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:1901566 organonitrogen compound biosynthetic process No
GO:0008150 biological_process No
GO:0009059 macromolecule biosynthetic process No
GO:0071704 organic substance metabolic process No
GO:0034645 cellular macromolecule biosynthetic process No
GO:0043604 amide biosynthetic process No
GO:0043603 cellular amide metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|5144
MKSWITGKDRKKSKPKDVANEVGEELNDSEKRAEYRQKQLTQTSQGTIFEDEIARPDTDAKEAGSGPSVGPPATR
NVMAMSTDPNPANRIRWHRKKVIQMVRTNGRLTRQQKINMTERQLLHKSPFMQTSTKKLVMLSRQITGKTIEDAI
VQMRWSKKKMSKEVLYYLEEARDLAIAQRGMGLGRVKGEMLKEPRRIRNKDGKWVDVVDPTRIYIAQSWVGRGEY
VDWTMDYKARGRGCIMWHPRTSLTVLLKEEKTRIRQHEEQEAKKAAKGPWIHLPDRPLHGQRPYYTW*
Coding >Ophun1|5144
ATGAAGAGCTGGATCACCGGGAAGGACCGCAAAAAATCTAAGCCCAAGGACGTGGCCAATGAAGTCGGCGAGGAG
CTCAACGACTCGGAAAAGAGAGCAGAGTATCGCCAGAAGCAGCTGACGCAGACCTCTCAGGGCACCATCTTCGAA
GATGAGATTGCCCGGCCCGATACGGATGCCAAAGAAGCCGGCTCCGGACCTTCCGTTGGCCCCCCTGCCACGCGC
AACGTCATGGCCATGTCTACAGACCCCAATCCAGCCAACCGCATCCGCTGGCATCGCAAAAAAGTCATACAGATG
GTTCGCACCAATGGCCGCCTCACGCGCCAGCAAAAGATCAACATGACGGAGAGGCAGCTCCTGCACAAAAGCCCC
TTCATGCAGACCAGCACCAAGAAGCTCGTCATGCTGTCTCGCCAGATCACCGGCAAGACCATCGAAGACGCCATC
GTCCAGATGCGCTGGTCCAAAAAGAAAATGTCCAAAGAGGTTCTCTACTACCTCGAGGAGGCCCGCGACCTCGCC
ATCGCCCAGCGCGGCATGGGCCTCGGCAGGGTCAAGGGCGAGATGCTCAAGGAGCCGCGCAGGATCCGTAACAAG
GACGGCAAGTGGGTCGACGTCGTAGACCCGACTCGCATCTACATCGCCCAGTCGTGGGTTGGCAGGGGAGAGTAT
GTCGACTGGACGATGGACTACAAAGCCCGAGGCCGCGGCTGTATTATGTGGCATCCCAGAACCAGCTTGACCGTC
CTGCTCAAGGAAGAGAAGACGAGGATACGGCAGCACGAAGAGCAAGAGGCTAAAAAGGCCGCCAAGGGACCCTGG
ATTCACCTGCCAGATCGTCCCCTCCACGGGCAACGTCCTTATTACACCTGGTAG
Transcript >Ophun1|5144
ATGAAGAGCTGGATCACCGGGAAGGACCGCAAAAAATCTAAGCCCAAGGACGTGGCCAATGAAGTCGGCGAGGAG
CTCAACGACTCGGAAAAGAGAGCAGAGTATCGCCAGAAGCAGCTGACGCAGACCTCTCAGGGCACCATCTTCGAA
GATGAGATTGCCCGGCCCGATACGGATGCCAAAGAAGCCGGCTCCGGACCTTCCGTTGGCCCCCCTGCCACGCGC
AACGTCATGGCCATGTCTACAGACCCCAATCCAGCCAACCGCATCCGCTGGCATCGCAAAAAAGTCATACAGATG
GTTCGCACCAATGGCCGCCTCACGCGCCAGCAAAAGATCAACATGACGGAGAGGCAGCTCCTGCACAAAAGCCCC
TTCATGCAGACCAGCACCAAGAAGCTCGTCATGCTGTCTCGCCAGATCACCGGCAAGACCATCGAAGACGCCATC
GTCCAGATGCGCTGGTCCAAAAAGAAAATGTCCAAAGAGGTTCTCTACTACCTCGAGGAGGCCCGCGACCTCGCC
ATCGCCCAGCGCGGCATGGGCCTCGGCAGGGTCAAGGGCGAGATGCTCAAGGAGCCGCGCAGGATCCGTAACAAG
GACGGCAAGTGGGTCGACGTCGTAGACCCGACTCGCATCTACATCGCCCAGTCGTGGGTTGGCAGGGGAGAGTAT
GTCGACTGGACGATGGACTACAAAGCCCGAGGCCGCGGCTGTATTATGTGGCATCCCAGAACCAGCTTGACCGTC
CTGCTCAAGGAAGAGAAGACGAGGATACGGCAGCACGAAGAGCAAGAGGCTAAAAAGGCCGCCAAGGGACCCTGG
ATTCACCTGCCAGATCGTCCCCTCCACGGGCAACGTCCTTATTACACCTGGTAG
Gene >Ophun1|5144
ATGAAGAGCTGGATCACCGGGAAGGACCGCAAAAAATCTAAGCCCAAGGACGTGGCCAATGAAGTCGGCGAGGAG
CTCAACGACTCGGAAAAGAGAGCAGAGTATCGCCAGAAGCAGCTGACGCAGACCTCTCAGGGCACCATCTTCGAA
GATGAGATTGCCCGGCCCGATACGGATGCCAAAGAAGCCGGCTCCGGACCTTCCGTTGGCCCCCCTGCCACGCGC
AACGTCATGGCCATGTCTACAGACCCCAATCCAGCCAACCGCATCCGCTGGCATCGCAAAAAAGTCATACAGATG
GTTCGCACCAATGGCCGCCTCACGCGCCAGCAAAAGATCAACATGACGGAGAGGCAGCTCCTGCACAAAAGCCCC
TTCATGCAGACCAGCACCAAGAAGCTCGTCATGCTGTCTCGCCAGATCACCGGCAAGACCATCGAAGACGCCATC
GTCCAGATGCGCTGGTCCAAAAAGAAAATGTCCAAAGAGGTTCTCTACTACCTCGAGGAGGCCCGCGACCTCGCC
ATCGCCCAGCGCGGCATGGGCCTCGGCAGGGTCAAGGGCGAGATGCTCAAGGAGCCGCGCAGGATCCGTAACAAG
GACGGCAAGTGGGTCGACGTCGTAGACCCGACTCGCATCTACATCGCCCAGTCGTGGGTTGGCAGGGGAGAGTAT
GTCGACTGGACGATGGACTACAAAGCCCGAGGCCGCGGCTGTATTATGTGGCATCCCAGAACCAGTCAGTCTCCT
CTTTTCCCCCTCCGTCCCCTTTGGACCACCATCACCCTGACCATCTACCGTCCTTAGGCTTGACCGTCCTGCTCA
AGGAAGAGAAGACGAGGATACGGCAGCACGAAGAGCAAGAGGCTAAAAAGGCCGCCAAGGGACCCTGGATTCACC
TGCCAGATCGTCCCCTCCACGGGCAACGTCCTTATTACACCTGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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