Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|5080
Gene name
LocationContig_488:12250..13685
Strand+
Gene length (bp)1435
Transcript length (bp)669
Coding sequence length (bp)669
Protein length (aa) 223

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein 4.5E-07 85 212

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|F4JCQ3|DG783_ARATH Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana GN=At3g47830 PE=3 SV=1 32 212 2.0E-28
sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=nth PE=3 SV=1 83 212 2.0E-10
sp|Q4UK93|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=nth PE=3 SV=1 84 214 3.0E-10
sp|Q92GH4|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=nth PE=3 SV=1 84 214 4.0E-10
sp|Q58829|Y1434_METJA Putative endonuclease MJ1434 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1434 PE=3 SV=1 82 213 9.0E-10
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Swissprot ID Swissprot Description Start End E-value
sp|F4JCQ3|DG783_ARATH Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana GN=At3g47830 PE=3 SV=1 32 212 2.0E-28
sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=nth PE=3 SV=1 83 212 2.0E-10
sp|Q4UK93|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=nth PE=3 SV=1 84 214 3.0E-10
sp|Q92GH4|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=nth PE=3 SV=1 84 214 4.0E-10
sp|Q58829|Y1434_METJA Putative endonuclease MJ1434 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1434 PE=3 SV=1 82 213 9.0E-10
sp|O05956|END3_RICPR Endonuclease III OS=Rickettsia prowazekii (strain Madrid E) GN=nth PE=3 SV=1 84 214 1.0E-09
sp|Q68W04|END3_RICTY Endonuclease III OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=nth PE=3 SV=1 84 214 2.0E-07
sp|Q89AW4|END3_BUCBP Endonuclease III OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=nth PE=3 SV=1 79 214 2.0E-07
sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2 100 208 3.0E-07
sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2 100 212 3.0E-07
sp|Q8KA16|END3_BUCAP Endonuclease III OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=nth PE=3 SV=1 81 214 5.0E-07
sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2 99 208 7.0E-07
sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2 100 208 2.0E-06
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GO

GO Term Description Terminal node
GO:0006284 base-excision repair Yes
GO:0090304 nucleic acid metabolic process No
GO:0044237 cellular metabolic process No
GO:0044238 primary metabolic process No
GO:0009987 cellular process No
GO:0008152 metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0006259 DNA metabolic process No
GO:0050896 response to stimulus No
GO:0006725 cellular aromatic compound metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0051716 cellular response to stimulus No
GO:0006807 nitrogen compound metabolic process No
GO:0006281 DNA repair No
GO:0033554 cellular response to stress No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0006974 cellular response to DNA damage stimulus No
GO:0046483 heterocycle metabolic process No
GO:0008150 biological_process No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0006950 response to stress No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2454
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|540
Ophiocordyceps australis map64 (Brazil) OphauB2|6235
Ophiocordyceps camponoti-floridani Ophcf2|03055
Ophiocordyceps camponoti-rufipedis Ophun1|5080 (this protein)
Ophiocordyceps kimflemingae Ophio5|6481
Ophiocordyceps subramaniannii Hirsu2|3525

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|5080
MIEAWAIKDSPEKAALLRDRKLKTFAAHAQNSPFPNWPRPTDADCQLAHAILARLHGDRVQPARIVAPTDTAGCG
ASPSVLDALVRTILSQNTSDVNSSRAKRNMDVVYGGSDKWEAIVEGGQEKLQQAIRSGGLSVVKSRVIIRVLEQV
KSRYGSYTLDHLFHVSDEDAMREMLSFQGVGPKTASCVLLFCLRRASFAVDTHVYRLAEVWGVSGWGEEGWV*
Coding >Ophun1|5080
ATGATTGAGGCTTGGGCCATCAAAGACTCCCCCGAAAAAGCCGCCCTCCTCCGAGACCGCAAACTAAAGACCTTC
GCCGCCCACGCCCAAAACTCCCCCTTTCCAAACTGGCCCCGTCCCACCGACGCAGACTGTCAGCTTGCCCACGCA
ATCCTCGCCCGCCTGCACGGAGACCGCGTCCAGCCTGCGCGCATCGTCGCCCCGACTGATACCGCCGGCTGCGGG
GCTTCACCCTCTGTGCTTGACGCGCTGGTGCGCACCATCCTTTCGCAGAATACCAGCGATGTCAACAGCTCGCGC
GCCAAGAGGAATATGGATGTCGTCTACGGAGGGTCGGATAAGTGGGAAGCCATCGTCGAGGGGGGACAGGAAAAG
CTACAGCAGGCTATCCGCTCAGGCGGTCTCAGCGTCGTCAAGTCGCGCGTGATAATCCGCGTACTGGAGCAAGTC
AAGTCCCGCTACGGCAGCTACACGCTCGACCACCTCTTCCACGTCAGCGACGAGGACGCCATGCGCGAGATGCTC
TCCTTCCAAGGCGTCGGCCCCAAGACGGCCAGCTGCGTGCTCCTCTTCTGTCTGCGGCGGGCGAGCTTCGCCGTC
GACACGCACGTGTATCGGCTGGCGGAGGTGTGGGGAGTGTCGGGCTGGGGGGAAGAGGGTTGGGTGTGA
Transcript >Ophun1|5080
ATGATTGAGGCTTGGGCCATCAAAGACTCCCCCGAAAAAGCCGCCCTCCTCCGAGACCGCAAACTAAAGACCTTC
GCCGCCCACGCCCAAAACTCCCCCTTTCCAAACTGGCCCCGTCCCACCGACGCAGACTGTCAGCTTGCCCACGCA
ATCCTCGCCCGCCTGCACGGAGACCGCGTCCAGCCTGCGCGCATCGTCGCCCCGACTGATACCGCCGGCTGCGGG
GCTTCACCCTCTGTGCTTGACGCGCTGGTGCGCACCATCCTTTCGCAGAATACCAGCGATGTCAACAGCTCGCGC
GCCAAGAGGAATATGGATGTCGTCTACGGAGGGTCGGATAAGTGGGAAGCCATCGTCGAGGGGGGACAGGAAAAG
CTACAGCAGGCTATCCGCTCAGGCGGTCTCAGCGTCGTCAAGTCGCGCGTGATAATCCGCGTACTGGAGCAAGTC
AAGTCCCGCTACGGCAGCTACACGCTCGACCACCTCTTCCACGTCAGCGACGAGGACGCCATGCGCGAGATGCTC
TCCTTCCAAGGCGTCGGCCCCAAGACGGCCAGCTGCGTGCTCCTCTTCTGTCTGCGGCGGGCGAGCTTCGCCGTC
GACACGCACGTGTATCGGCTGGCGGAGGTGTGGGGAGTGTCGGGCTGGGGGGAAGAGGGTTGGGTGTGA
Gene >Ophun1|5080
ATGATTGAGGCTTGGGCCATGTGCGTCTCGCGTGTGCGACGGGTGCTTCCGTGGGCGGGCCGATGATAGTCCGGT
CAGGGGAGATAAAGTGACGTCAACACTTTTCGTCGACATCGTCTTTGAAGAGGAAGAGGAAGAAGATGGCGTTGC
GCAGAACTTCTCTTGTTATCTTTGTTTCTGTCGCTACTCCGTGACTCGCTCCTGGTCGTCGGTACGGTTCAATGG
CTGTGTCTGCTGCTGGGAAGACGCCGGTGAGGCGCAGCGGCCGGAATGTGAAGAGAGTCGACTTGGAGATGGCAT
CGTCGTCAGAAGCGGGCGTCTTGTCGAAGAAGCGAAGAATCAAGAAGGAAGAAGAGCAGCAACAGCTTCAATCAC
CGACTATCAAGACGGAATCATCGTCTGAAGCAACCCCCTCGCCCAAGAAGCGAAGAATCAAGAAAGAACAAGGGC
AGCACCTCTCATCAACCCCCAATCCAGACTCCCCATCCAAAGCGACCCCCTCACCCAGGAAGCGAAGAATCAAGA
ACGAAGAAGCGCAGCGCCTCTCATCAACCCCAAACCCAGACTCCCCATCCAAAGCAACCCCTACCCCCAACAACC
GCAGAATCAAAAAAGAAGAATCCCCATCCCCATCCAAACAAACCACCCCCTTAAAACACCAACCCAGCAAAGACT
CCCCCGAAAAAGCCGCCCTCCTCCGAGACCGCAAACTAAAGACCTTCGCCGCCCACGCCCAAAACTCCCCCTTTC
CAAACTGGCCCCGTCCCACCGACGCAGACTGTCAGCTTGCCCACGCAATCCTCGCCCGCCTGCACGGAGACCGCG
TCCAGCCTGCGCGCATCGTCGCCCCGACTGATACCGCCGGCTGCGGGGCTTCACCCTCTGTGCTTGACGCGCTGG
TGCGCACCATCCTTTCGCAGAATACCAGCGATGTCAACAGCTCGCGCGCCAAGAGGAATATGGATGTCGTCTACG
GAGGGTCGGATAAGTGGGAAGCCATCGTCGAGGGGGGACAGGAAAAGCTACAGCAGGCTATCCGCTCAGGCGGTC
TCAGCGTCGTCAAGTCGCGCGTGATAATCCGCGTACTGGAGCAAGTCAAGTCCCGCTACGGCAGCTACACGCTCG
ACCACCTCTTCCACGTCAGCGACGAGGACGCCATGCGCGAGATGCTCTCCTTCCAAGGCGTCGGCCCCAAGACGG
CCAGCTGCGTGCTCCTCTTCTGTCTGCGGCGGGCGAGCTTCGCCGTCGACACGCACGTGTATCGGCTGGCGGGTC
TGCTGGGGTGGAGGCCGGCTGGGGCGTCGAGGGAGGAGACGCAGGCGCATCTCGATGCGAGGATTCCGGATGGGG
AGAAGTATGCTTTGCATGTTTTGCTGATTGTTCATGGGAAGAGGTGTGGGGAGTGTCGGGCTGGGGGGAAGAGGG
TTGGGTGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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