© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|5074 |
| Gene name | |
| Location | Contig_487:12044..14094 |
| Strand | + |
| Gene length (bp) | 2050 |
| Transcript length (bp) | 1623 |
| Coding sequence length (bp) | 1623 |
| Protein length (aa) | 541 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03943 | TAP_C | TAP C-terminal domain | 3.0E-16 | 489 | 534 |
| PF02136 | NTF2 | Nuclear transport factor 2 (NTF2) domain | 3.1E-05 | 294 | 465 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y8G3|MEX67_SCHPO | mRNA export factor mex67 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mex67 PE=1 SV=1 | 98 | 535 | 3.0E-48 |
| sp|Q99257|MEX67_YEAST | mRNA export factor MEX67 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEX67 PE=1 SV=1 | 50 | 470 | 2.0E-45 |
| sp|P84149|MEX67_CANAL | mRNA export factor MEX67 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MEX67 PE=1 SV=2 | 62 | 534 | 2.0E-34 |
| sp|Q99JX7|NXF1_MOUSE | Nuclear RNA export factor 1 OS=Mus musculus GN=Nxf1 PE=1 SV=3 | 109 | 534 | 1.0E-27 |
| sp|O88984|NXF1_RAT | Nuclear RNA export factor 1 OS=Rattus norvegicus GN=Nxf1 PE=2 SV=1 | 109 | 534 | 1.0E-27 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y8G3|MEX67_SCHPO | mRNA export factor mex67 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mex67 PE=1 SV=1 | 98 | 535 | 3.0E-48 |
| sp|Q99257|MEX67_YEAST | mRNA export factor MEX67 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEX67 PE=1 SV=1 | 50 | 470 | 2.0E-45 |
| sp|P84149|MEX67_CANAL | mRNA export factor MEX67 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MEX67 PE=1 SV=2 | 62 | 534 | 2.0E-34 |
| sp|Q99JX7|NXF1_MOUSE | Nuclear RNA export factor 1 OS=Mus musculus GN=Nxf1 PE=1 SV=3 | 109 | 534 | 1.0E-27 |
| sp|O88984|NXF1_RAT | Nuclear RNA export factor 1 OS=Rattus norvegicus GN=Nxf1 PE=2 SV=1 | 109 | 534 | 1.0E-27 |
| sp|Q9UBU9|NXF1_HUMAN | Nuclear RNA export factor 1 OS=Homo sapiens GN=NXF1 PE=1 SV=1 | 109 | 534 | 3.0E-26 |
| sp|Q1RMS5|NXF1_BOVIN | Nuclear RNA export factor 1 OS=Bos taurus GN=NXF1 PE=2 SV=1 | 109 | 534 | 3.0E-26 |
| sp|P58797|NXF1_COTJA | Nuclear RNA export factor 1 OS=Coturnix coturnix japonica GN=NXF1 PE=1 SV=1 | 109 | 534 | 2.0E-25 |
| sp|Q5R752|NXF1_PONAB | Nuclear RNA export factor 1 OS=Pongo abelii GN=NXF1 PE=3 SV=1 | 109 | 534 | 6.0E-25 |
| sp|Q9GZY0|NXF2_HUMAN | Nuclear RNA export factor 2 OS=Homo sapiens GN=NXF2 PE=1 SV=1 | 110 | 538 | 1.0E-20 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0051028 | mRNA transport | Yes |
| GO:0005634 | nucleus | Yes |
| GO:0005575 | cellular_component | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0008150 | biological_process | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0051236 | establishment of RNA localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0050658 | RNA transport | No |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0015931 | nucleobase-containing compound transport | No |
| GO:0071702 | organic substance transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0043229 | intracellular organelle | No |
| GO:0050657 | nucleic acid transport | No |
| GO:0043226 | organelle | No |
| GO:0071705 | nitrogen compound transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|5074 MDGDLDMDATGKRFSKEFPSGMSGQRRPPRSTASQGPRNSRALPGRPQTSHAAGDYVFIGASQEDADEIIKLNTF TFAGTQLEIVESDDSLEYHGKATESKDTQELRAKLQAILSQRYQGDNKLLKLDALACDPELVTLGMFENRERALK TFKGLMAICDGLFKTAVEKREAIESISIAHNSIDDIFQVESLATTFPQLKNLDMSGNQLSDMRALDPWKGKFREL ETIYVTGNPLENLDASYQTTLLEWFPKLQNINGSQVRTAEQIAEQRAAASRSKAIPQSGPDFRDVNGIGENFLLE FFTAYDHDRQGLSSRFYDEASKFSLAVDTQSARRGNMPAPLPWSAYIRVSRNLMKITTVNARTQRLFKGVDVITD VWKSLPLTKHPNIKEDLSKYIMDCHPLPGLGDPNEQTRTGVDGLIISVHGEFEELDQKSGERGQRSFSRTFVLGP GQAGKGPIRVVSDMLSLRAYNPLPDVFAQTTANNTHQAMIDELSKQTGMVSEYCEMCLSQVDWQFDKAIAMFHEK KAALPTEAFSSVSRC* |
| Coding | >Ophun1|5074 ATGGATGGAGACCTGGACATGGATGCTACTGGCAAACGGTTCTCCAAGGAGTTTCCTTCTGGAATGAGCGGACAG AGACGACCCCCGCGTTCGACAGCCTCTCAAGGTCCAAGAAACTCTCGCGCTTTGCCGGGAAGACCTCAGACGTCC CACGCGGCCGGCGACTATGTGTTCATCGGCGCCAGCCAGGAAGACGCGGATGAGATTATCAAGCTCAACACCTTC ACCTTTGCCGGTACCCAACTCGAGATTGTCGAGTCTGACGACAGTCTCGAGTATCACGGCAAGGCCACGGAGTCC AAGGATACGCAGGAGCTGCGGGCCAAACTCCAAGCCATCTTGAGCCAGCGATACCAGGGCGACAACAAGCTGCTG AAGCTGGACGCTCTCGCATGCGACCCGGAGCTCGTCACGCTCGGCATGTTTGAGAACCGAGAGAGGGCCCTCAAG ACGTTCAAGGGGCTCATGGCCATATGCGACGGCCTCTTCAAGACGGCAGTGGAAAAACGAGAGGCCATCGAGAGC ATCAGCATCGCCCATAATAGCATCGACGACATTTTTCAGGTCGAGTCGCTGGCCACGACGTTTCCGCAGCTGAAG AACCTCGACATGAGCGGCAATCAGTTGAGCGACATGAGAGCGCTGGACCCCTGGAAGGGCAAGTTTAGGGAACTT GAGACCATCTACGTGACGGGGAATCCGCTGGAGAATCTCGATGCCAGCTACCAGACGACGCTCCTCGAGTGGTTC CCCAAGCTGCAAAACATCAACGGCAGCCAAGTACGAACGGCCGAGCAGATTGCCGAACAGCGAGCTGCCGCTTCG AGGTCCAAGGCCATACCGCAGAGCGGACCAGACTTTCGCGACGTTAACGGCATCGGGGAGAATTTCCTGCTCGAA TTCTTTACGGCTTACGACCACGACCGGCAAGGCCTGTCGTCGCGCTTCTACGATGAAGCCAGTAAGTTTTCCCTT GCTGTGGACACGCAATCAGCGCGAAGGGGGAACATGCCGGCGCCGCTTCCGTGGTCGGCATACATCAGGGTGTCA CGGAACTTGATGAAGATTACGACGGTGAACGCGAGGACGCAGAGGCTTTTCAAGGGGGTCGACGTCATCACCGAC GTCTGGAAGAGCCTCCCCCTCACCAAGCATCCCAACATCAAAGAGGACCTCAGCAAGTACATCATGGACTGTCAC CCGCTGCCGGGCCTAGGGGATCCCAACGAACAGACGCGCACGGGCGTGGACGGACTGATCATCTCGGTGCACGGC GAATTCGAGGAGCTCGACCAGAAGAGCGGGGAACGAGGACAGCGCAGTTTCTCGCGCACCTTTGTGCTCGGGCCT GGCCAGGCGGGCAAAGGGCCGATCCGGGTGGTTAGCGACATGCTGTCACTCAGAGCCTACAACCCGCTGCCCGAC GTCTTTGCGCAAACGACGGCAAACAACACGCACCAGGCCATGATTGACGAGCTGTCGAAGCAAACGGGCATGGTG AGCGAGTACTGCGAGATGTGTCTCTCGCAGGTGGACTGGCAGTTTGACAAGGCCATTGCCATGTTCCACGAGAAA AAGGCGGCGCTTCCCACGGAGGCCTTTTCATCGGTGTCTCGGTGTTAG |
| Transcript | >Ophun1|5074 ATGGATGGAGACCTGGACATGGATGCTACTGGCAAACGGTTCTCCAAGGAGTTTCCTTCTGGAATGAGCGGACAG AGACGACCCCCGCGTTCGACAGCCTCTCAAGGTCCAAGAAACTCTCGCGCTTTGCCGGGAAGACCTCAGACGTCC CACGCGGCCGGCGACTATGTGTTCATCGGCGCCAGCCAGGAAGACGCGGATGAGATTATCAAGCTCAACACCTTC ACCTTTGCCGGTACCCAACTCGAGATTGTCGAGTCTGACGACAGTCTCGAGTATCACGGCAAGGCCACGGAGTCC AAGGATACGCAGGAGCTGCGGGCCAAACTCCAAGCCATCTTGAGCCAGCGATACCAGGGCGACAACAAGCTGCTG AAGCTGGACGCTCTCGCATGCGACCCGGAGCTCGTCACGCTCGGCATGTTTGAGAACCGAGAGAGGGCCCTCAAG ACGTTCAAGGGGCTCATGGCCATATGCGACGGCCTCTTCAAGACGGCAGTGGAAAAACGAGAGGCCATCGAGAGC ATCAGCATCGCCCATAATAGCATCGACGACATTTTTCAGGTCGAGTCGCTGGCCACGACGTTTCCGCAGCTGAAG AACCTCGACATGAGCGGCAATCAGTTGAGCGACATGAGAGCGCTGGACCCCTGGAAGGGCAAGTTTAGGGAACTT GAGACCATCTACGTGACGGGGAATCCGCTGGAGAATCTCGATGCCAGCTACCAGACGACGCTCCTCGAGTGGTTC CCCAAGCTGCAAAACATCAACGGCAGCCAAGTACGAACGGCCGAGCAGATTGCCGAACAGCGAGCTGCCGCTTCG AGGTCCAAGGCCATACCGCAGAGCGGACCAGACTTTCGCGACGTTAACGGCATCGGGGAGAATTTCCTGCTCGAA TTCTTTACGGCTTACGACCACGACCGGCAAGGCCTGTCGTCGCGCTTCTACGATGAAGCCAGTAAGTTTTCCCTT GCTGTGGACACGCAATCAGCGCGAAGGGGGAACATGCCGGCGCCGCTTCCGTGGTCGGCATACATCAGGGTGTCA CGGAACTTGATGAAGATTACGACGGTGAACGCGAGGACGCAGAGGCTTTTCAAGGGGGTCGACGTCATCACCGAC GTCTGGAAGAGCCTCCCCCTCACCAAGCATCCCAACATCAAAGAGGACCTCAGCAAGTACATCATGGACTGTCAC CCGCTGCCGGGCCTAGGGGATCCCAACGAACAGACGCGCACGGGCGTGGACGGACTGATCATCTCGGTGCACGGC GAATTCGAGGAGCTCGACCAGAAGAGCGGGGAACGAGGACAGCGCAGTTTCTCGCGCACCTTTGTGCTCGGGCCT GGCCAGGCGGGCAAAGGGCCGATCCGGGTGGTTAGCGACATGCTGTCACTCAGAGCCTACAACCCGCTGCCCGAC GTCTTTGCGCAAACGACGGCAAACAACACGCACCAGGCCATGATTGACGAGCTGTCGAAGCAAACGGGCATGGTG AGCGAGTACTGCGAGATGTGTCTCTCGCAGGTGGACTGGCAGTTTGACAAGGCCATTGCCATGTTCCACGAGAAA AAGGCGGCGCTTCCCACGGAGGCCTTTTCATCGGTGTCTCGGTGTTAG |
| Gene | >Ophun1|5074 ATGGATGGAGACCTGGACATGGATGCTACTGGCAAACGGTTCTCCAAGGAGTTTCCTTCTGGAATGAGCGGACAG AGACGACCCCCGCGTTCGACAGCCTCTCAAGGTCCAAGAAACTCTCGCGCTTTGCCGGGAAGACCTCAGACGGTA CCGAGACGGCAAAGAGGCGGCGCTGGTCCCTACATCACTCGTCACTTGGATGCCGCTTCAAGGGTTCGCGGCAGA CTGGTCTTTCTACGTGTGCACGGCCTCAAGCAGAGCAAGGCAGCAACCAACAAGGACGGAGGCATAAGCAACCTC GTAGACTTTCTGGAAAGAAAAGCGTCCTCCTTCAACGGACGTCCAATGCGGCCAATCATGATCAAAAAGGTTAGT CCTAACTCGATGGCGGCTCCCGAATGCCAGCAAAGTTCTTCAAAGAAAGATCGGCTCGTCTACTTGCAAGAGAGA GCGCTCAGCCTAGCGTCTTGTTTCGTCACCTCAAACATCGGCTTCAAGCTGACGGGCGGCAGTCCCACGCGGCCG GCGACTATGTGTTCATCGGCGCCAGCCAGGAAGACGCGGATGAGATTATCAAGCTCAACACCTTCACCTTTGCCG GTACCCAACTCGAGATTGTCGAGTCTGACGACAGTCTCGAGTATCACGGCAAGGCCACGGAGTCCAAGGATACGC AGGAGCTGCGGGCCAAACTCCAAGCCATCTTGAGCCAGCGATACCAGGGCGACAACAAGCTGCTGAAGCTGGACG CTCTCGCATGCGACCCGGAGCTCGTCACGCTCGGCATGTTTGAGAACCGAGAGAGGGCCCTCAAGACGTTCAAGG GGCTCATGGCCATATGCGACGGCCTCTTCAAGACGGCAGTGGAAAAACGAGAGGCCATCGAGAGCATCAGCATCG CCCATAATAGCATCGACGACATTTTTCAGGTCGAGTCGCTGGCCACGACGTTTCCGCAGCTGAAGAACCTCGACA TGAGCGGCAATCAGTTGAGCGACATGAGAGCGCTGGACCCCTGGAAGGGCAAGTTTAGGGAACTTGAGACCATCT ACGTGACGGGGAATCCGCTGGAGAATCTCGATGCCAGCTACCAGACGACGCTCCTCGAGTGGTTCCCCAAGCTGC AAAACATCAACGGCAGCCAAGTACGAACGGCCGAGCAGATTGCCGAACAGCGAGCTGCCGCTTCGAGGTCCAAGG CCATACCGCAGAGCGGACCAGACTTTCGCGACGTTAACGGCATCGGGGAGAATTTCCTGCTCGAATTCTTTACGG CTTACGACCACGACCGGCAAGGCCTGTCGTCGCGCTTCTACGATGAAGCCAGTAAGTTTTCCCTTGCTGTGGACA CGCAATCAGCGCGAAGGGGGAACATGCCGGCGCCGCTTCCGTGGTCGGCATACATCAGGGTGTCACGGAACTTGA TGAAGATTACGACGGTGAACGCGAGGACGCAGAGGCTTTTCAAGGGGGTCGACGTCATCACCGACGTCTGGAAGA GCCTCCCCCTCACCAAGCATCCCAACATCAAAGAGGACCTCAGCAAGTACATCATGGACTGTCACCCGCTGCCGG GCCTAGGGGATCCCAACGAACAGACGCGCACGGGCGTGGACGGACTGATCATCTCGGTGCACGGCGAATTCGAGG AGCTCGACCAGAAGAGCGGGGAACGAGGACAGCGCAGTTTCTCGCGCACCTTTGTGCTCGGGCCTGGCCAGGCGG GCAAAGGGCCGATCCGGGTGGTTAGCGACATGCTGTCACTCAGAGCCTACAACCCGCTGCCCGACGTCTTTGCGC AAACGACGGCAAACAACACGCACCAGGCCATGATTGACGAGCTGTCGAAGCAAACGGGCATGGTGAGCGAGTACT GCGAGATGTGTCTCTCGCAGGTGGACTGGCAGTTTGACAAGGCCATTGCCATGTTCCACGAGAAAAAGGTACGGG GGATTTAGCATCGATGACGGGGGGAGGCGTGTTGGTTGCTGACGGACTGGAGCAGGCGGCGCTTCCCACGGAGGC CTTTTCATCGGTGTCTCGGTGTTAG |