Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|5074
Gene name
LocationContig_487:12044..14094
Strand+
Gene length (bp)2050
Transcript length (bp)1623
Coding sequence length (bp)1623
Protein length (aa) 541

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03943 TAP_C TAP C-terminal domain 3.0E-16 489 534
PF02136 NTF2 Nuclear transport factor 2 (NTF2) domain 3.1E-05 294 465

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9Y8G3|MEX67_SCHPO mRNA export factor mex67 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mex67 PE=1 SV=1 98 535 3.0E-48
sp|Q99257|MEX67_YEAST mRNA export factor MEX67 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEX67 PE=1 SV=1 50 470 2.0E-45
sp|P84149|MEX67_CANAL mRNA export factor MEX67 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MEX67 PE=1 SV=2 62 534 2.0E-34
sp|Q99JX7|NXF1_MOUSE Nuclear RNA export factor 1 OS=Mus musculus GN=Nxf1 PE=1 SV=3 109 534 1.0E-27
sp|O88984|NXF1_RAT Nuclear RNA export factor 1 OS=Rattus norvegicus GN=Nxf1 PE=2 SV=1 109 534 1.0E-27
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9Y8G3|MEX67_SCHPO mRNA export factor mex67 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mex67 PE=1 SV=1 98 535 3.0E-48
sp|Q99257|MEX67_YEAST mRNA export factor MEX67 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEX67 PE=1 SV=1 50 470 2.0E-45
sp|P84149|MEX67_CANAL mRNA export factor MEX67 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MEX67 PE=1 SV=2 62 534 2.0E-34
sp|Q99JX7|NXF1_MOUSE Nuclear RNA export factor 1 OS=Mus musculus GN=Nxf1 PE=1 SV=3 109 534 1.0E-27
sp|O88984|NXF1_RAT Nuclear RNA export factor 1 OS=Rattus norvegicus GN=Nxf1 PE=2 SV=1 109 534 1.0E-27
sp|Q9UBU9|NXF1_HUMAN Nuclear RNA export factor 1 OS=Homo sapiens GN=NXF1 PE=1 SV=1 109 534 3.0E-26
sp|Q1RMS5|NXF1_BOVIN Nuclear RNA export factor 1 OS=Bos taurus GN=NXF1 PE=2 SV=1 109 534 3.0E-26
sp|P58797|NXF1_COTJA Nuclear RNA export factor 1 OS=Coturnix coturnix japonica GN=NXF1 PE=1 SV=1 109 534 2.0E-25
sp|Q5R752|NXF1_PONAB Nuclear RNA export factor 1 OS=Pongo abelii GN=NXF1 PE=3 SV=1 109 534 6.0E-25
sp|Q9GZY0|NXF2_HUMAN Nuclear RNA export factor 2 OS=Homo sapiens GN=NXF2 PE=1 SV=1 110 538 1.0E-20
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GO

GO Term Description Terminal node
GO:0051028 mRNA transport Yes
GO:0005634 nucleus Yes
GO:0005575 cellular_component No
GO:0043231 intracellular membrane-bounded organelle No
GO:0008150 biological_process No
GO:0043227 membrane-bounded organelle No
GO:0051236 establishment of RNA localization No
GO:0110165 cellular anatomical entity No
GO:0050658 RNA transport No
GO:0006810 transport No
GO:0051179 localization No
GO:0015931 nucleobase-containing compound transport No
GO:0071702 organic substance transport No
GO:0051234 establishment of localization No
GO:0043229 intracellular organelle No
GO:0050657 nucleic acid transport No
GO:0043226 organelle No
GO:0071705 nitrogen compound transport No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 47 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|5074
MDGDLDMDATGKRFSKEFPSGMSGQRRPPRSTASQGPRNSRALPGRPQTSHAAGDYVFIGASQEDADEIIKLNTF
TFAGTQLEIVESDDSLEYHGKATESKDTQELRAKLQAILSQRYQGDNKLLKLDALACDPELVTLGMFENRERALK
TFKGLMAICDGLFKTAVEKREAIESISIAHNSIDDIFQVESLATTFPQLKNLDMSGNQLSDMRALDPWKGKFREL
ETIYVTGNPLENLDASYQTTLLEWFPKLQNINGSQVRTAEQIAEQRAAASRSKAIPQSGPDFRDVNGIGENFLLE
FFTAYDHDRQGLSSRFYDEASKFSLAVDTQSARRGNMPAPLPWSAYIRVSRNLMKITTVNARTQRLFKGVDVITD
VWKSLPLTKHPNIKEDLSKYIMDCHPLPGLGDPNEQTRTGVDGLIISVHGEFEELDQKSGERGQRSFSRTFVLGP
GQAGKGPIRVVSDMLSLRAYNPLPDVFAQTTANNTHQAMIDELSKQTGMVSEYCEMCLSQVDWQFDKAIAMFHEK
KAALPTEAFSSVSRC*
Coding >Ophun1|5074
ATGGATGGAGACCTGGACATGGATGCTACTGGCAAACGGTTCTCCAAGGAGTTTCCTTCTGGAATGAGCGGACAG
AGACGACCCCCGCGTTCGACAGCCTCTCAAGGTCCAAGAAACTCTCGCGCTTTGCCGGGAAGACCTCAGACGTCC
CACGCGGCCGGCGACTATGTGTTCATCGGCGCCAGCCAGGAAGACGCGGATGAGATTATCAAGCTCAACACCTTC
ACCTTTGCCGGTACCCAACTCGAGATTGTCGAGTCTGACGACAGTCTCGAGTATCACGGCAAGGCCACGGAGTCC
AAGGATACGCAGGAGCTGCGGGCCAAACTCCAAGCCATCTTGAGCCAGCGATACCAGGGCGACAACAAGCTGCTG
AAGCTGGACGCTCTCGCATGCGACCCGGAGCTCGTCACGCTCGGCATGTTTGAGAACCGAGAGAGGGCCCTCAAG
ACGTTCAAGGGGCTCATGGCCATATGCGACGGCCTCTTCAAGACGGCAGTGGAAAAACGAGAGGCCATCGAGAGC
ATCAGCATCGCCCATAATAGCATCGACGACATTTTTCAGGTCGAGTCGCTGGCCACGACGTTTCCGCAGCTGAAG
AACCTCGACATGAGCGGCAATCAGTTGAGCGACATGAGAGCGCTGGACCCCTGGAAGGGCAAGTTTAGGGAACTT
GAGACCATCTACGTGACGGGGAATCCGCTGGAGAATCTCGATGCCAGCTACCAGACGACGCTCCTCGAGTGGTTC
CCCAAGCTGCAAAACATCAACGGCAGCCAAGTACGAACGGCCGAGCAGATTGCCGAACAGCGAGCTGCCGCTTCG
AGGTCCAAGGCCATACCGCAGAGCGGACCAGACTTTCGCGACGTTAACGGCATCGGGGAGAATTTCCTGCTCGAA
TTCTTTACGGCTTACGACCACGACCGGCAAGGCCTGTCGTCGCGCTTCTACGATGAAGCCAGTAAGTTTTCCCTT
GCTGTGGACACGCAATCAGCGCGAAGGGGGAACATGCCGGCGCCGCTTCCGTGGTCGGCATACATCAGGGTGTCA
CGGAACTTGATGAAGATTACGACGGTGAACGCGAGGACGCAGAGGCTTTTCAAGGGGGTCGACGTCATCACCGAC
GTCTGGAAGAGCCTCCCCCTCACCAAGCATCCCAACATCAAAGAGGACCTCAGCAAGTACATCATGGACTGTCAC
CCGCTGCCGGGCCTAGGGGATCCCAACGAACAGACGCGCACGGGCGTGGACGGACTGATCATCTCGGTGCACGGC
GAATTCGAGGAGCTCGACCAGAAGAGCGGGGAACGAGGACAGCGCAGTTTCTCGCGCACCTTTGTGCTCGGGCCT
GGCCAGGCGGGCAAAGGGCCGATCCGGGTGGTTAGCGACATGCTGTCACTCAGAGCCTACAACCCGCTGCCCGAC
GTCTTTGCGCAAACGACGGCAAACAACACGCACCAGGCCATGATTGACGAGCTGTCGAAGCAAACGGGCATGGTG
AGCGAGTACTGCGAGATGTGTCTCTCGCAGGTGGACTGGCAGTTTGACAAGGCCATTGCCATGTTCCACGAGAAA
AAGGCGGCGCTTCCCACGGAGGCCTTTTCATCGGTGTCTCGGTGTTAG
Transcript >Ophun1|5074
ATGGATGGAGACCTGGACATGGATGCTACTGGCAAACGGTTCTCCAAGGAGTTTCCTTCTGGAATGAGCGGACAG
AGACGACCCCCGCGTTCGACAGCCTCTCAAGGTCCAAGAAACTCTCGCGCTTTGCCGGGAAGACCTCAGACGTCC
CACGCGGCCGGCGACTATGTGTTCATCGGCGCCAGCCAGGAAGACGCGGATGAGATTATCAAGCTCAACACCTTC
ACCTTTGCCGGTACCCAACTCGAGATTGTCGAGTCTGACGACAGTCTCGAGTATCACGGCAAGGCCACGGAGTCC
AAGGATACGCAGGAGCTGCGGGCCAAACTCCAAGCCATCTTGAGCCAGCGATACCAGGGCGACAACAAGCTGCTG
AAGCTGGACGCTCTCGCATGCGACCCGGAGCTCGTCACGCTCGGCATGTTTGAGAACCGAGAGAGGGCCCTCAAG
ACGTTCAAGGGGCTCATGGCCATATGCGACGGCCTCTTCAAGACGGCAGTGGAAAAACGAGAGGCCATCGAGAGC
ATCAGCATCGCCCATAATAGCATCGACGACATTTTTCAGGTCGAGTCGCTGGCCACGACGTTTCCGCAGCTGAAG
AACCTCGACATGAGCGGCAATCAGTTGAGCGACATGAGAGCGCTGGACCCCTGGAAGGGCAAGTTTAGGGAACTT
GAGACCATCTACGTGACGGGGAATCCGCTGGAGAATCTCGATGCCAGCTACCAGACGACGCTCCTCGAGTGGTTC
CCCAAGCTGCAAAACATCAACGGCAGCCAAGTACGAACGGCCGAGCAGATTGCCGAACAGCGAGCTGCCGCTTCG
AGGTCCAAGGCCATACCGCAGAGCGGACCAGACTTTCGCGACGTTAACGGCATCGGGGAGAATTTCCTGCTCGAA
TTCTTTACGGCTTACGACCACGACCGGCAAGGCCTGTCGTCGCGCTTCTACGATGAAGCCAGTAAGTTTTCCCTT
GCTGTGGACACGCAATCAGCGCGAAGGGGGAACATGCCGGCGCCGCTTCCGTGGTCGGCATACATCAGGGTGTCA
CGGAACTTGATGAAGATTACGACGGTGAACGCGAGGACGCAGAGGCTTTTCAAGGGGGTCGACGTCATCACCGAC
GTCTGGAAGAGCCTCCCCCTCACCAAGCATCCCAACATCAAAGAGGACCTCAGCAAGTACATCATGGACTGTCAC
CCGCTGCCGGGCCTAGGGGATCCCAACGAACAGACGCGCACGGGCGTGGACGGACTGATCATCTCGGTGCACGGC
GAATTCGAGGAGCTCGACCAGAAGAGCGGGGAACGAGGACAGCGCAGTTTCTCGCGCACCTTTGTGCTCGGGCCT
GGCCAGGCGGGCAAAGGGCCGATCCGGGTGGTTAGCGACATGCTGTCACTCAGAGCCTACAACCCGCTGCCCGAC
GTCTTTGCGCAAACGACGGCAAACAACACGCACCAGGCCATGATTGACGAGCTGTCGAAGCAAACGGGCATGGTG
AGCGAGTACTGCGAGATGTGTCTCTCGCAGGTGGACTGGCAGTTTGACAAGGCCATTGCCATGTTCCACGAGAAA
AAGGCGGCGCTTCCCACGGAGGCCTTTTCATCGGTGTCTCGGTGTTAG
Gene >Ophun1|5074
ATGGATGGAGACCTGGACATGGATGCTACTGGCAAACGGTTCTCCAAGGAGTTTCCTTCTGGAATGAGCGGACAG
AGACGACCCCCGCGTTCGACAGCCTCTCAAGGTCCAAGAAACTCTCGCGCTTTGCCGGGAAGACCTCAGACGGTA
CCGAGACGGCAAAGAGGCGGCGCTGGTCCCTACATCACTCGTCACTTGGATGCCGCTTCAAGGGTTCGCGGCAGA
CTGGTCTTTCTACGTGTGCACGGCCTCAAGCAGAGCAAGGCAGCAACCAACAAGGACGGAGGCATAAGCAACCTC
GTAGACTTTCTGGAAAGAAAAGCGTCCTCCTTCAACGGACGTCCAATGCGGCCAATCATGATCAAAAAGGTTAGT
CCTAACTCGATGGCGGCTCCCGAATGCCAGCAAAGTTCTTCAAAGAAAGATCGGCTCGTCTACTTGCAAGAGAGA
GCGCTCAGCCTAGCGTCTTGTTTCGTCACCTCAAACATCGGCTTCAAGCTGACGGGCGGCAGTCCCACGCGGCCG
GCGACTATGTGTTCATCGGCGCCAGCCAGGAAGACGCGGATGAGATTATCAAGCTCAACACCTTCACCTTTGCCG
GTACCCAACTCGAGATTGTCGAGTCTGACGACAGTCTCGAGTATCACGGCAAGGCCACGGAGTCCAAGGATACGC
AGGAGCTGCGGGCCAAACTCCAAGCCATCTTGAGCCAGCGATACCAGGGCGACAACAAGCTGCTGAAGCTGGACG
CTCTCGCATGCGACCCGGAGCTCGTCACGCTCGGCATGTTTGAGAACCGAGAGAGGGCCCTCAAGACGTTCAAGG
GGCTCATGGCCATATGCGACGGCCTCTTCAAGACGGCAGTGGAAAAACGAGAGGCCATCGAGAGCATCAGCATCG
CCCATAATAGCATCGACGACATTTTTCAGGTCGAGTCGCTGGCCACGACGTTTCCGCAGCTGAAGAACCTCGACA
TGAGCGGCAATCAGTTGAGCGACATGAGAGCGCTGGACCCCTGGAAGGGCAAGTTTAGGGAACTTGAGACCATCT
ACGTGACGGGGAATCCGCTGGAGAATCTCGATGCCAGCTACCAGACGACGCTCCTCGAGTGGTTCCCCAAGCTGC
AAAACATCAACGGCAGCCAAGTACGAACGGCCGAGCAGATTGCCGAACAGCGAGCTGCCGCTTCGAGGTCCAAGG
CCATACCGCAGAGCGGACCAGACTTTCGCGACGTTAACGGCATCGGGGAGAATTTCCTGCTCGAATTCTTTACGG
CTTACGACCACGACCGGCAAGGCCTGTCGTCGCGCTTCTACGATGAAGCCAGTAAGTTTTCCCTTGCTGTGGACA
CGCAATCAGCGCGAAGGGGGAACATGCCGGCGCCGCTTCCGTGGTCGGCATACATCAGGGTGTCACGGAACTTGA
TGAAGATTACGACGGTGAACGCGAGGACGCAGAGGCTTTTCAAGGGGGTCGACGTCATCACCGACGTCTGGAAGA
GCCTCCCCCTCACCAAGCATCCCAACATCAAAGAGGACCTCAGCAAGTACATCATGGACTGTCACCCGCTGCCGG
GCCTAGGGGATCCCAACGAACAGACGCGCACGGGCGTGGACGGACTGATCATCTCGGTGCACGGCGAATTCGAGG
AGCTCGACCAGAAGAGCGGGGAACGAGGACAGCGCAGTTTCTCGCGCACCTTTGTGCTCGGGCCTGGCCAGGCGG
GCAAAGGGCCGATCCGGGTGGTTAGCGACATGCTGTCACTCAGAGCCTACAACCCGCTGCCCGACGTCTTTGCGC
AAACGACGGCAAACAACACGCACCAGGCCATGATTGACGAGCTGTCGAAGCAAACGGGCATGGTGAGCGAGTACT
GCGAGATGTGTCTCTCGCAGGTGGACTGGCAGTTTGACAAGGCCATTGCCATGTTCCACGAGAAAAAGGTACGGG
GGATTTAGCATCGATGACGGGGGGAGGCGTGTTGGTTGCTGACGGACTGGAGCAGGCGGCGCTTCCCACGGAGGC
CTTTTCATCGGTGTCTCGGTGTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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