Fungal Genomics

at Utrecht University

General Properties

Protein IDOphun1|5063
Gene name
LocationContig_486:6616..7292
Strand+
Gene length (bp)676
Transcript length (bp)618
Coding sequence length (bp)618
Protein length (aa) 206

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16242 Pyrid_ox_like Pyridoxamine 5'-phosphate oxidase like 3.4E-22 30 182
PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase 3.9E-08 34 116

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q01358|BLI3_NEUCR Protein bli-3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=bli-3 PE=2 SV=1 3 204 6.0E-96

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 53 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophun1|5063
MSFSNTSVGDKPADPYRQANLDNVDVKTKISDLVDFMTACKFSMMTTHEAATNNLVSRCMALAATETGGIDLLFH
TNTESHKTNDIASDSHINISFINASGEWASISGTASVVTDRDLVKKHYTPALKAWVGDLGDGTHDGSENDPRIGV
VRVKMNFASYSLVAKNILSRAAEVVQGAVTGKPAHVMKLREINPKEVEQWRSVHT*
Coding >Ophun1|5063
ATGTCCTTCTCCAACACCTCCGTCGGCGACAAGCCCGCAGATCCCTACCGACAGGCCAACCTCGACAATGTCGAC
GTCAAGACAAAAATCTCCGACCTCGTCGACTTCATGACGGCCTGCAAGTTCAGCATGATGACCACCCACGAGGCC
GCCACCAATAACCTCGTGTCGCGATGCATGGCTCTGGCCGCAACCGAAACGGGCGGCATCGATCTGCTGTTCCAC
ACCAACACCGAGTCGCACAAGACCAATGACATCGCCAGCGATTCCCACATCAACATCTCCTTCATCAACGCCTCG
GGCGAGTGGGCTTCCATCTCCGGTACCGCCTCCGTCGTCACCGATCGCGACCTCGTCAAGAAGCACTACACGCCC
GCCCTCAAGGCCTGGGTCGGAGATCTGGGCGACGGCACCCACGACGGCTCGGAAAACGACCCCCGCATCGGCGTC
GTCCGCGTCAAGATGAACTTTGCCAGCTACTCGCTCGTCGCCAAGAACATCCTGAGCCGAGCCGCAGAGGTCGTG
CAGGGGGCTGTGACGGGCAAGCCTGCTCACGTCATGAAGCTGAGGGAAATCAACCCCAAGGAGGTCGAGCAATGG
CGTTCGGTACACACGTAA
Transcript >Ophun1|5063
ATGTCCTTCTCCAACACCTCCGTCGGCGACAAGCCCGCAGATCCCTACCGACAGGCCAACCTCGACAATGTCGAC
GTCAAGACAAAAATCTCCGACCTCGTCGACTTCATGACGGCCTGCAAGTTCAGCATGATGACCACCCACGAGGCC
GCCACCAATAACCTCGTGTCGCGATGCATGGCTCTGGCCGCAACCGAAACGGGCGGCATCGATCTGCTGTTCCAC
ACCAACACCGAGTCGCACAAGACCAATGACATCGCCAGCGATTCCCACATCAACATCTCCTTCATCAACGCCTCG
GGCGAGTGGGCTTCCATCTCCGGTACCGCCTCCGTCGTCACCGATCGCGACCTCGTCAAGAAGCACTACACGCCC
GCCCTCAAGGCCTGGGTCGGAGATCTGGGCGACGGCACCCACGACGGCTCGGAAAACGACCCCCGCATCGGCGTC
GTCCGCGTCAAGATGAACTTTGCCAGCTACTCGCTCGTCGCCAAGAACATCCTGAGCCGAGCCGCAGAGGTCGTG
CAGGGGGCTGTGACGGGCAAGCCTGCTCACGTCATGAAGCTGAGGGAAATCAACCCCAAGGAGGTCGAGCAATGG
CGTTCGGTACACACGTAA
Gene >Ophun1|5063
ATGTCCTTCTCCAACACCTCCGTCGGCGACAAGCCCGCAGATCCCTACCGACAGGCCAACCTCGACAATGTCGAC
GTCAAGACAAAAATCTCCGACCTCGTCGACTTCATGACGGCCTGCAAGTTCAGCATGATGACCACCCACGAGGCC
GCCACCAATAACCTCGTGTCGCGATGCATGGCTCTGGCCGCAACCGTGAGAGTCCTTGATGCCGTTCGCTGCAGA
GACGTCGCCTAACTCCTCCTCCTCTCAGGAAACGGGCGGCATCGATCTGCTGTTCCACACCAACACCGAGTCGCA
CAAGACCAATGACATCGCCAGCGATTCCCACATCAACATCTCCTTCATCAACGCCTCGGGCGAGTGGGCTTCCAT
CTCCGGTACCGCCTCCGTCGTCACCGATCGCGACCTCGTCAAGAAGCACTACACGCCCGCCCTCAAGGCCTGGGT
CGGAGATCTGGGCGACGGCACCCACGACGGCTCGGAAAACGACCCCCGCATCGGCGTCGTCCGCGTCAAGATGAA
CTTTGCCAGCTACTCGCTCGTCGCCAAGAACATCCTGAGCCGAGCCGCAGAGGTCGTGCAGGGGGCTGTGACGGG
CAAGCCTGCTCACGTCATGAAGCTGAGGGAAATCAACCCCAAGGAGGTCGAGCAATGGCGTTCGGTACACACGTA
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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