© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophun1|4743 |
| Gene name | |
| Location | Contig_444:6655..7743 |
| Strand | - |
| Gene length (bp) | 1088 |
| Transcript length (bp) | 948 |
| Coding sequence length (bp) | 948 |
| Protein length (aa) | 316 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00789 | UBX | UBX domain | 2.3E-06 | 238 | 315 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10483|YDFB_SCHPO | Uncharacterized protein C17C9.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.11c PE=4 SV=2 | 77 | 313 | 4.0E-24 |
| sp|Q6NXA9|UBXN1_DANRE | UBX domain-containing protein 1 OS=Danio rerio GN=ubxn1 PE=2 SV=1 | 5 | 314 | 1.0E-21 |
| sp|Q6GL77|UBXN1_XENTR | UBX domain-containing protein 1 OS=Xenopus tropicalis GN=ubxn1 PE=2 SV=1 | 3 | 314 | 1.0E-20 |
| sp|Q6IP50|UBX1A_XENLA | UBX domain-containing protein 1-A OS=Xenopus laevis GN=ubxn1-a PE=2 SV=1 | 3 | 314 | 1.0E-17 |
| sp|Q6GLV4|UBX1B_XENLA | UBX domain-containing protein 1-B OS=Xenopus laevis GN=ubxn1-b PE=2 SV=1 | 3 | 314 | 2.0E-16 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10483|YDFB_SCHPO | Uncharacterized protein C17C9.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.11c PE=4 SV=2 | 77 | 313 | 4.0E-24 |
| sp|Q6NXA9|UBXN1_DANRE | UBX domain-containing protein 1 OS=Danio rerio GN=ubxn1 PE=2 SV=1 | 5 | 314 | 1.0E-21 |
| sp|Q6GL77|UBXN1_XENTR | UBX domain-containing protein 1 OS=Xenopus tropicalis GN=ubxn1 PE=2 SV=1 | 3 | 314 | 1.0E-20 |
| sp|Q6IP50|UBX1A_XENLA | UBX domain-containing protein 1-A OS=Xenopus laevis GN=ubxn1-a PE=2 SV=1 | 3 | 314 | 1.0E-17 |
| sp|Q6GLV4|UBX1B_XENLA | UBX domain-containing protein 1-B OS=Xenopus laevis GN=ubxn1-b PE=2 SV=1 | 3 | 314 | 2.0E-16 |
| sp|Q922Y1|UBXN1_MOUSE | UBX domain-containing protein 1 OS=Mus musculus GN=Ubxn1 PE=1 SV=1 | 5 | 314 | 5.0E-14 |
| sp|Q499N6|UBXN1_RAT | UBX domain-containing protein 1 OS=Rattus norvegicus GN=Ubxn1 PE=3 SV=2 | 5 | 314 | 4.0E-13 |
| sp|Q32KW2|UBXN1_BOVIN | UBX domain-containing protein 1 OS=Bos taurus GN=UBXN1 PE=2 SV=1 | 5 | 314 | 4.0E-10 |
| sp|Q04323|UBXN1_HUMAN | UBX domain-containing protein 1 OS=Homo sapiens GN=UBXN1 PE=1 SV=2 | 5 | 314 | 3.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophun1|4743 MPSDLDQLLDMGFEKARAEMAVKKSGGLQGALQWLEDNQEKSLEEIQEASKDANEDEDEAETRAKIAELETGKAQ SLVCNECGKRFRNQDLASYHATKTEHTDFSESTEEIAPLTEEEKKAKLDELRERLKAKKAVQSVQDKEDQKRNEK IRQKATKETQDAKEELQRKEQMKEVARKRQEKAEDMEAKKRIKAKIEADKAERRRKADEAKAARDGKVPEPQPSA VQTPAAPAAQPRSDRNEARLRLQLASGNITKTLPAGTTLFELAQMVQSETGNAVTSFSTTLPRKTFEGDLDMSKT LKEAGLVPSSVLIVK* |
| Coding | >Ophun1|4743 ATGCCTTCCGATCTGGACCAGCTGCTCGACATGGGCTTCGAGAAAGCCCGCGCCGAAATGGCCGTGAAAAAATCC GGTGGCCTCCAAGGCGCTCTGCAGTGGCTGGAGGACAACCAGGAAAAGTCGCTGGAAGAGATTCAAGAAGCTTCC AAAGATGCCAACGAAGACGAAGACGAGGCCGAGACGAGGGCCAAGATTGCAGAGCTGGAGACTGGCAAGGCTCAA TCGCTGGTTTGCAACGAGTGTGGCAAGCGTTTCCGCAACCAAGATCTGGCAAGCTACCATGCCACCAAGACAGAA CACACCGACTTTTCCGAATCGACCGAAGAAATCGCCCCCCTGACCGAAGAGGAGAAAAAGGCCAAGCTGGACGAA CTCCGAGAGCGCCTCAAGGCCAAAAAGGCCGTACAGTCCGTTCAGGACAAGGAGGATCAGAAACGAAACGAGAAA ATCCGCCAAAAGGCCACAAAGGAGACGCAAGACGCAAAGGAAGAGCTCCAGCGCAAGGAGCAGATGAAGGAAGTC GCCCGCAAGCGCCAAGAAAAAGCCGAAGACATGGAGGCCAAGAAGCGCATCAAGGCCAAGATCGAAGCCGACAAG GCCGAGCGACGCCGCAAGGCTGACGAGGCCAAGGCAGCTCGCGACGGCAAGGTTCCCGAACCGCAGCCGTCTGCG GTGCAAACTCCGGCTGCTCCCGCCGCACAGCCCAGATCGGACCGCAACGAGGCTAGACTCAGGCTTCAGCTGGCG TCGGGCAACATTACCAAGACGCTGCCGGCGGGAACGACGTTGTTTGAGCTGGCACAGATGGTTCAGAGCGAGACG GGAAACGCCGTCACCAGTTTCTCTACGACGCTGCCGCGCAAAACTTTTGAAGGCGACCTCGACATGTCCAAGACG CTCAAAGAGGCTGGCCTGGTGCCGTCGTCGGTACTCATCGTAAAGTAG |
| Transcript | >Ophun1|4743 ATGCCTTCCGATCTGGACCAGCTGCTCGACATGGGCTTCGAGAAAGCCCGCGCCGAAATGGCCGTGAAAAAATCC GGTGGCCTCCAAGGCGCTCTGCAGTGGCTGGAGGACAACCAGGAAAAGTCGCTGGAAGAGATTCAAGAAGCTTCC AAAGATGCCAACGAAGACGAAGACGAGGCCGAGACGAGGGCCAAGATTGCAGAGCTGGAGACTGGCAAGGCTCAA TCGCTGGTTTGCAACGAGTGTGGCAAGCGTTTCCGCAACCAAGATCTGGCAAGCTACCATGCCACCAAGACAGAA CACACCGACTTTTCCGAATCGACCGAAGAAATCGCCCCCCTGACCGAAGAGGAGAAAAAGGCCAAGCTGGACGAA CTCCGAGAGCGCCTCAAGGCCAAAAAGGCCGTACAGTCCGTTCAGGACAAGGAGGATCAGAAACGAAACGAGAAA ATCCGCCAAAAGGCCACAAAGGAGACGCAAGACGCAAAGGAAGAGCTCCAGCGCAAGGAGCAGATGAAGGAAGTC GCCCGCAAGCGCCAAGAAAAAGCCGAAGACATGGAGGCCAAGAAGCGCATCAAGGCCAAGATCGAAGCCGACAAG GCCGAGCGACGCCGCAAGGCTGACGAGGCCAAGGCAGCTCGCGACGGCAAGGTTCCCGAACCGCAGCCGTCTGCG GTGCAAACTCCGGCTGCTCCCGCCGCACAGCCCAGATCGGACCGCAACGAGGCTAGACTCAGGCTTCAGCTGGCG TCGGGCAACATTACCAAGACGCTGCCGGCGGGAACGACGTTGTTTGAGCTGGCACAGATGGTTCAGAGCGAGACG GGAAACGCCGTCACCAGTTTCTCTACGACGCTGCCGCGCAAAACTTTTGAAGGCGACCTCGACATGTCCAAGACG CTCAAAGAGGCTGGCCTGGTGCCGTCGTCGGTACTCATCGTAAAGTAG |
| Gene | >Ophun1|4743 ATGCCTTCCGATCTGGACCAGCTGCTCGACATGGGCTTCGAGAAAGCCCGCGCCGAAATGGCCGTGAAAAAATCC GGTGGCCGTGCGTATCCCTACAGCTACCTACGTCACCCCGCTAACGCCGGCTCAGTCCAAGGCGCTCTGCAGTGG CTGGAGGACAACCAGGAAAAGTCGCTGGAAGAGATTCAAGAAGCTTCCAAAGATGCCAACGAAGACGAAGACGAG GCCGAGACGAGGGCCAAGATTGCAGAGCTGGAGACTGGCAAGGCTCAATCGCTGGTTTGCAACGAGTGTGGCAAG CGTTTCCGCAACCAAGATCTGGCAAGCTACCATGCCACCAAGACGTCGGTCACTTGTTTGAAACTGTGATGAGTT GCTGACCTTTACAGAGAACACACCGACTTTTCCGAATCGACCGAAGAAATCGCCCCCCTGACCGAAGAGGAGAAA AAGGCCAAGCTGGACGAACTCCGAGAGCGCCTCAAGGCCAAAAAGGCCGTACAGTCCGTTCAGGACAAGGAGGAT CAGAAACGAAACGAGGTAGACTCCATGCCGCCGCCTACCCGACACACGCTGACGATGACCAGAAAATCCGCCAAA AGGCCACAAAGGAGACGCAAGACGCAAAGGAAGAGCTCCAGCGCAAGGAGCAGATGAAGGAAGTCGCCCGCAAGC GCCAAGAAAAAGCCGAAGACATGGAGGCCAAGAAGCGCATCAAGGCCAAGATCGAAGCCGACAAGGCCGAGCGAC GCCGCAAGGCTGACGAGGCCAAGGCAGCTCGCGACGGCAAGGTTCCCGAACCGCAGCCGTCTGCGGTGCAAACTC CGGCTGCTCCCGCCGCACAGCCCAGATCGGACCGCAACGAGGCTAGACTCAGGCTTCAGCTGGCGTCGGGCAACA TTACCAAGACGCTGCCGGCGGGAACGACGTTGTTTGAGCTGGCACAGATGGTTCAGAGCGAGACGGGAAACGCCG TCACCAGTTTCTCTACGACGCTGCCGCGCAAAACTTTTGAAGGCGACCTCGACATGTCCAAGACGCTCAAAGAGG CTGGCCTGGTGCCGTCGTCGGTACTCATCGTAAAGTAG |